Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0020602

Physical Location & Seq

Genomic Coordinates Forward (+)

3859789 .. 3864565

Gene Structure 4777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTCGGCTCTTCAGCCTCCAGAAGCGTCGTCCTAACCCACTAGTTGTTGGAGATGATGTGTTCAAAGACCTCGAGAATCAGACAAGAACTCACCATTTCCATCCGATAAGAAACGGAGCCATCGGCTATGTCCTGGAGAGAACGCTCTTCGAGCCCAACCCAGAGCACGTGGCCAGTGATGGAGGAGTGCCGATTCGTTACAAAGGAATACCATGTGTCAACTCTCTGACTGTCCTAATTCCCATGGCCATCATCATTGGGCTTCAATACTGGAAGAAGATCGGAGCTATTTCTACAGCGCTCAACCTCGCCCGCCGCCCGCTACAGACGCTTCTCAAGTACGTCAAGGTCACTAGCCGTTGGGCTTTGTTTGGCCTCCTCCTTGCATACCTGCTTCTGACCATTTGCGCCAATTTTGCATTTCTCTTGATCTCTCTGGTCACTTGCCACCACTGCACCTGCACCTGGACAGTAGAAATCAGAGAATGGAATGCATACAAGCTACTTGATTCAGATCTTGTGATACGCTCAAAGTGCTCTCGGAGCTGCAAAATAGGTTCAGGGGATGCCACTGTGCAAAAAGTCAATGCAGAAGTCGGCAGTGCCCCTGCTTTGCCGCAGATCATGAATGCTAAGCTCCCTGCTGTGTTGAAGCTGTATCGTGACCAACTTACGGCTAATATGAAAACTGCTATCAAGAATGCAGTTGCAGAGCTGCTTCCCATTCTTGTTTCCCGACCTCTGGAATCTGATTCTACACATGGAGAGCGAGTTATGTTGGGTGTGTGGATCCGATTCCACATAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

271

Amino Acids

30.15

Weight (kDa)

9.61

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020602)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0240311
rosa_laevigata	RLG00000000686
rosa_multiflora	Rmu_sc0002676.1_g000014
rosa_samantha	Rh7AG489100 Rh7BG462000
rosa_wichuraiana	Rw7G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	470
Acc36I	ACCTGC	2 cut(s)	402, 470
AciI	CCGC	4 cut(s)	316, 319, 323, 620
AclWI	GGATC	2 cut(s)	787, 800
AcoI	YGGCCR	2 cut(s)	174, 249
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	344
AfeI	AGCGCT	1 cut(s)	303
AfiI	CCNNNNNNNGG	3 cut(s)	468, 676, 745
AgsI	TTSAA	3 cut(s)	67, 269, 655
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	135, 467
AluBI	AGCT	6 cut(s)	290, 505, 549, 640, 658, 718
AluI	AGCT	6 cut(s)	290, 505, 549, 640, 658, 718
Alw21I	GWGCWC	2 cut(s)	171, 542
AlwI	GGATC	2 cut(s)	787, 800
Ama87I	CYCGRG	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	303
AoxI	GGCC	3 cut(s)	174, 249, 376
ApeKI	GCWGC	2 cut(s)	549, 718
AspLEI	GCGC	2 cut(s)	304, 413
AsuHPI	GGTGA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	610
BalI	TGGCCA	2 cut(s)	176, 251
BamHI	GGATCC	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	159
BbrPI	CACGTG	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	171, 542
BbvI	GCAGC	2 cut(s)	536, 705
BccI	CCATC	4 cut(s)	111, 131, 176, 260
BceAI	ACGGC	2 cut(s)	345, 693
BciT130I	CCWGG	2 cut(s)	137, 469
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	2 cut(s)	44, 357
BfmI	CTRYAG	2 cut(s)	297, 326
BfoI	RGCGCY	1 cut(s)	305
BfuAI	ACCTGC	2 cut(s)	402, 470
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	4 cut(s)	319, 550, 620, 719
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	4 cut(s)	320, 551, 621, 720
Bme1390I	CCNGG	2 cut(s)	137, 469
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	121, 794
BmrFI	CCNGG	2 cut(s)	137, 469
BmsI	GCATC	1 cut(s)	559
BpmI	CTGGAG	2 cut(s)	5, 158
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 759, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 676, 745
Bse1I	ACTGG	2 cut(s)	177, 278
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	137, 469
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	103, 574
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	3 cut(s)	468, 676, 745
BseNI	ACTGG	2 cut(s)	177, 278
BseRI	GAGGAG	2 cut(s)	201, 371
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	2 cut(s)	536, 705
BsgI	GTGCAG	2 cut(s)	442, 448
BshFI	GGCC	3 cut(s)	176, 251, 378
BsiHKAI	GWGCWC	2 cut(s)	171, 542
BsiHKCI	CYCGRG	1 cut(s)	74
BslI	CCNNNNNNNGG	3 cut(s)	468, 676, 745
BsmI	GAATGC	3 cut(s)	499, 637, 709
BsnI	GGCC	3 cut(s)	176, 251, 378
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	4 cut(s)	159, 171, 542, 610
Bsp143I	GATC	5 cut(s)	282, 432, 517, 624, 792
Bsp1720I	GCTNAGC	1 cut(s)	636
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	4 cut(s)	316, 319, 323, 620
BspANI	GGCC	3 cut(s)	176, 251, 378
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	121, 794
BspMI	ACCTGC	2 cut(s)	402, 470
BspPI	GGATC	2 cut(s)	787, 800
BspQI	GCTCTTC	2 cut(s)	17, 155
BsrI	ACTGG	2 cut(s)	177, 278
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	5 cut(s)	282, 432, 517, 624, 792
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	137, 469
Bst4CI	ACNGT	3 cut(s)	235, 475, 577
Bst6I	CTCTTC	2 cut(s)	17, 155
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	316, 323
BstDEI	CTNAG	1 cut(s)	636
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	103, 574
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	304, 413
BstKTI	GATC	5 cut(s)	285, 435, 520, 627, 795
BstMBI	GATC	5 cut(s)	282, 432, 517, 624, 792
BstMWI	GCNNNNNNNGC	6 cut(s)	154, 331, 419, 456, 537, 546
BstNI	CCWGG	2 cut(s)	137, 469
BstSCI	CCNGG	2 cut(s)	135, 467
BstSFI	CTRYAG	2 cut(s)	297, 326
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	2 cut(s)	536, 705
BstX2I	RGATCY	2 cut(s)	517, 792
BstYI	RGATCY	2 cut(s)	517, 792
BsuRI	GGCC	3 cut(s)	176, 251, 378
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	103, 574
BtsI	GCAGTG	2 cut(s)	454, 610
BtsIMutI	CAGTG	4 cut(s)	184, 454, 573, 610
BveI	ACCTGC	2 cut(s)	402, 470
Cac8I	GCNNGC	2 cut(s)	316, 323
CciI	TCATGA	1 cut(s)	627
CfoI	GCGC	2 cut(s)	304, 413
CseI	GACGC	2 cut(s)	17, 340
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	4 cut(s)	216, 247, 628, 764
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	5 cut(s)	284, 434, 519, 626, 794
DpnII	GATC	5 cut(s)	282, 432, 517, 624, 792
EaeI	YGGCCR	2 cut(s)	174, 249
Eam1104I	CTCTTC	2 cut(s)	17, 155
EarI	CTCTTC	2 cut(s)	17, 155
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	159
Eco47III	AGCGCT	1 cut(s)	303
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	135, 467
EcoT14I	CCWWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	219, 250, 631, 767
FatI	CATG	4 cut(s)	215, 246, 627, 763
FauI	CCCGC	2 cut(s)	323, 330
Fnu4HI	GCNGC	4 cut(s)	319, 550, 620, 719
FokI	GGATG	2 cut(s)	90, 581
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	4 cut(s)	319, 550, 620, 719
FspBI	CTAG	2 cut(s)	44, 357
GlaI	GCGC	2 cut(s)	303, 412
GluI	GCNGC	4 cut(s)	319, 550, 620, 719
GsuI	CTGGAG	2 cut(s)	5, 158
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	176, 251, 378
HgaI	GACGC	2 cut(s)	17, 340
HhaI	GCGC	2 cut(s)	304, 413
Hin1II	CATG	4 cut(s)	219, 250, 631, 767
Hin6I	GCGC	2 cut(s)	302, 411
HinP1I	GCGC	2 cut(s)	302, 411
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	6 cut(s)	79, 196, 512, 749, 755, 798
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	8 cut(s)	22, 76, 430, 628, 665, 700, 738, 746
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	33
HpyCH4III	ACNGT	3 cut(s)	235, 475, 577
HpyCH4IV	ACGT	2 cut(s)	171, 345
HpyF10VI	GCNNNNNNNGC	6 cut(s)	154, 331, 419, 456, 537, 546
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	2 cut(s)	171, 345
Hsp92II	CATG	4 cut(s)	219, 250, 631, 767
HspAI	GCGC	2 cut(s)	302, 411
Kzo9I	GATC	5 cut(s)	282, 432, 517, 624, 792
LguI	GCTCTTC	2 cut(s)	17, 155
LmnI	GCTCC	4 cut(s)	119, 287, 546, 645
Lsp1109I	GCAGC	2 cut(s)	536, 705
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	2 cut(s)	44, 357
MaeII	ACGT	2 cut(s)	171, 345
MaeIII	GTNAC	4 cut(s)	200, 352, 442, 665
MalI	GATC	5 cut(s)	284, 434, 519, 626, 794
MboI	GATC	5 cut(s)	282, 432, 517, 624, 792
MboII	GAAGA	4 cut(s)	4, 142, 289, 292
MflI	RGATCY	2 cut(s)	517, 792
MhlI	GDGCHC	4 cut(s)	159, 171, 542, 610
MlsI	TGGCCA	2 cut(s)	176, 251
MluCI	AATT	2 cut(s)	240, 415
MluNI	TGGCCA	2 cut(s)	176, 251
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	7 cut(s)	29, 83, 179, 320, 389, 392, 753
Mox20I	TGGCCA	2 cut(s)	176, 251
Mph1103I	ATGCAT	1 cut(s)	499
MscI	TGGCCA	2 cut(s)	176, 251
Msp20I	TGGCCA	2 cut(s)	176, 251
MspR9I	CCNGG	2 cut(s)	137, 469
Mva1269I	GAATGC	3 cut(s)	499, 637, 709
MvaI	CCWGG	2 cut(s)	137, 469
MwoI	GCNNNNNNNGC	6 cut(s)	154, 331, 419, 456, 537, 546
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	5 cut(s)	282, 432, 517, 624, 792
NlaIII	CATG	4 cut(s)	219, 250, 631, 767
NlaIV	GGNNCC	2 cut(s)	121, 794
NmuCI	GTSAC	3 cut(s)	352, 442, 665
NsiI	ATGCAT	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	74
PagI	TCATGA	1 cut(s)	627
PaqCI	CACCTGC	1 cut(s)	470
PciSI	GCTCTTC	2 cut(s)	17, 155
PctI	GAATGC	3 cut(s)	499, 637, 709
PfeI	GAWTC	6 cut(s)	79, 196, 512, 749, 755, 798
PfoI	TCCNGGA	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	320, 551, 621, 720
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	135, 467
PspCI	CACGTG	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	135, 467
PspN4I	GGNNCC	2 cut(s)	121, 794
PsuI	RGATCY	2 cut(s)	517, 792
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SapI	GCTCTTC	2 cut(s)	17, 155
SatI	GCNGC	4 cut(s)	319, 550, 620, 719
Sau3AI	GATC	5 cut(s)	282, 432, 517, 624, 792
ScrFI	CCNGG	2 cut(s)	137, 469
SduI	GDGCHC	4 cut(s)	159, 171, 542, 610
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	2 cut(s)	297, 326
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	74, 338
SmoI	CTYRAG	2 cut(s)	74, 338
SpeI	ACTAGT	1 cut(s)	43
Sse9I	AATT	2 cut(s)	240, 415
SsiI	CCGC	4 cut(s)	316, 319, 323, 620
SspMI	CTAG	2 cut(s)	44, 357
StyD4I	CCNGG	2 cut(s)	135, 467
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	235, 475, 577
TaiI	ACGT	2 cut(s)	174, 348
TaqI	TCGA	2 cut(s)	75, 153
TasI	AATT	2 cut(s)	240, 415
TauI	GCSGC	2 cut(s)	321, 622
TfiI	GAWTC	6 cut(s)	79, 196, 512, 749, 755, 798
TscAI	CASTG	4 cut(s)	184, 461, 580, 610
TseFI	GTSAC	3 cut(s)	352, 442, 665
TseI	GCWGC	2 cut(s)	549, 718
Tsp45I	GTSAC	3 cut(s)	352, 442, 665
TspDTI	ATGAA	2 cut(s)	644, 701
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	4 cut(s)	184, 461, 580, 610
XhoI	CTCGAG	1 cut(s)	74
XspI	CTAG	2 cut(s)	44, 357
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.