Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020602

Physical Location & Seq

Genomic Coordinates Reverse (-)

54772627 .. 54791086

Gene Structure 18460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG462000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTCGGCTCTTCAGCTTCCAGAAGCGTCGTCCTAACCCACTGGTTGTCGGAGATGACGTGTTCGAAGACCTCGAGAATCAGGCGAGAGCTCGCTATTGCCATCCGGTAAGAAACGGAGCCATCGGCGATGTTCTGGAGAGAGCGCTCTTCGAGCCCAACCCAGAGCACGTGGCCGGTGACGGAGGAGTGCCGATTCGTTACAAAGGAATACCATGTGTCAACTCTCTGACTGTCCTAATTCCCATGGCCATCATCATTGGGCTTCAATACTGGAAGAAGATCGGAGCTATTTCAACCCTTCTCCTGCTCTCTACAGCGCTCGCCCTGGCCCCCCGCCCGCCGCAGACGCTTCTCAAGTACGTCAAGGCTAAGCTCCCCGCTGTGTTGAAGCTGTATCGTGACCAAATTACGGCTGATATGAAGACTGCTATCAAGAATGCAGTTGCAGAGCTGCTTCCCGTTCTTGTTTCCCGACCTCTGGAATCTGATTCTACACATGGAGAGCGAGTTGCAGATGCCAACGGGACTTGTGCAATTTATCATTACATGTCTAAAGAAATGATACAGGCACATCTATTACTGTCTGCTGAAGTGAAACAGGCTATTGAGTGGATTATGTGCAACCTCGGTGGTCACTATTCAGCTGATTCAGTTGCTGCTGCACTTGCTGTTGGTGCTGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

229

Amino Acids

24.95

Weight (kDa)

8.24

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020602)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0240311
rosa_laevigata	RLG00000000686
rosa_multiflora	Rmu_sc0002676.1_g000014
rosa_samantha	Rh7AG489100 Rh7BG462000
rosa_wichuraiana	Rw7G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	337, 341, 344, 381
AcoI	YGGCCR	2 cut(s)	174, 249
AcuI	CTGAAG	1 cut(s)	612
AcvI	CACGTG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	362
AfeI	AGCGCT	2 cut(s)	147, 321
AfiI	CCNNNNNNNGG	2 cut(s)	412, 481
AflIII	ACRYGT	2 cut(s)	60, 549
AgsI	TTSAA	3 cut(s)	269, 297, 391
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	7 cut(s)	18, 92, 290, 376, 394, 454, 647
AluI	AGCT	7 cut(s)	18, 92, 290, 376, 394, 454, 647
Alw21I	GWGCWC	2 cut(s)	94, 171
AlwNI	CAGNNNCTG	1 cut(s)	659
Ama87I	CYCGRG	1 cut(s)	74
Aor51HI	AGCGCT	2 cut(s)	147, 321
AoxI	GGCC	3 cut(s)	174, 249, 330
ApeKI	GCWGC	3 cut(s)	454, 659, 662
AspLEI	GCGC	2 cut(s)	148, 322
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	191
AsuII	TTCGAA	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	74
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	94, 159
BbrPI	CACGTG	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	75, 431
Bbv12I	GWGCWC	2 cut(s)	94, 171
BbvI	GCAGC	3 cut(s)	441, 646, 649
BccI	CCATC	3 cut(s)	111, 131, 260
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	2 cut(s)	149, 323
BisI	GCNGC	4 cut(s)	344, 455, 660, 663
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	4 cut(s)	345, 456, 661, 664
Bme1390I	CCNGG	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	121, 333
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	75, 431
BpmI	CTGGAG	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	3 cut(s)	246, 327, 628
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 481
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	48, 278
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	3 cut(s)	246, 327, 628
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	412, 481
BseNI	ACTGG	2 cut(s)	48, 278
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	3 cut(s)	441, 646, 649
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	3 cut(s)	176, 251, 332
BsiHKAI	GWGCWC	2 cut(s)	94, 171
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	107, 177
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	412, 481
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	176, 251, 332
BsoBI	CYCGRG	1 cut(s)	74
Bsp119I	TTCGAA	1 cut(s)	66
Bsp1286I	GDGCHC	3 cut(s)	94, 159, 171
Bsp143I	GATC	1 cut(s)	282
Bsp1720I	GCTNAGC	1 cut(s)	372
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	4 cut(s)	337, 341, 344, 381
BspANI	GGCC	3 cut(s)	176, 251, 332
BspLI	GGNNCC	2 cut(s)	121, 333
BspQI	GCTCTTC	2 cut(s)	17, 155
BspT104I	TTCGAA	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	48, 278
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	246, 327, 628
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	235, 585
Bst6I	CTCTTC	2 cut(s)	17, 155
BstBAI	YACGTR	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	66
BstC8I	GCNNGC	3 cut(s)	94, 324, 341
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	2 cut(s)	149, 323
BstHHI	GCGC	2 cut(s)	148, 322
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 349, 668, 677
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	3 cut(s)	441, 646, 649
BstV2I	GAAGAC	2 cut(s)	75, 431
BsuRI	GGCC	3 cut(s)	176, 251, 332
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	94, 324, 341
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	2 cut(s)	148, 322
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	2 cut(s)	17, 358
Csp6I	GTAC	1 cut(s)	361
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	4 cut(s)	216, 247, 500, 550
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	2 cut(s)	174, 249
Eam1104I	CTCTTC	2 cut(s)	17, 155
EarI	CTCTTC	2 cut(s)	17, 155
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	94, 159
Eco47III	AGCGCT	2 cut(s)	147, 321
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	612
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	94, 159
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	219, 250, 503, 553
FaiI	YATR	6 cut(s)	217, 248, 422, 501, 551, 620
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	4 cut(s)	215, 246, 499, 549
FauI	CCCGC	3 cut(s)	344, 348, 388
Fnu4HI	GCNGC	4 cut(s)	344, 455, 660, 663
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	2 cut(s)	94, 159
Fsp4HI	GCNGC	4 cut(s)	344, 455, 660, 663
GlaI	GCGC	2 cut(s)	147, 321
GluI	GCNGC	4 cut(s)	344, 455, 660, 663
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	2 cut(s)	149, 323
HaeIII	GGCC	3 cut(s)	176, 251, 332
HapII	CCGG	2 cut(s)	107, 177
HgaI	GACGC	2 cut(s)	17, 358
HhaI	GCGC	2 cut(s)	148, 322
Hin1II	CATG	4 cut(s)	219, 250, 503, 553
Hin6I	GCGC	2 cut(s)	146, 320
HinP1I	GCGC	2 cut(s)	146, 320
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	5 cut(s)	79, 196, 485, 491, 650
HpaII	CCGG	2 cut(s)	107, 177
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	53, 231, 287, 490
Hpy188III	TCNNGA	7 cut(s)	22, 76, 137, 401, 436, 474, 482
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	2 cut(s)	235, 585
HpyCH4IV	ACGT	3 cut(s)	60, 171, 363
HpyCH4V	TGCA	6 cut(s)	443, 449, 515, 536, 624, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 349, 668, 677
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	3 cut(s)	60, 171, 363
Hsp92II	CATG	4 cut(s)	219, 250, 503, 553
HspAI	GCGC	2 cut(s)	146, 320
Kzo9I	GATC	1 cut(s)	282
LguI	GCTCTTC	2 cut(s)	17, 155
LmnI	GCTCC	3 cut(s)	119, 287, 381
Lsp1109I	GCAGC	3 cut(s)	441, 646, 649
LweI	GCATC	1 cut(s)	508
MaeII	ACGT	3 cut(s)	60, 171, 363
MaeIII	GTNAC	4 cut(s)	179, 200, 401, 635
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	6 cut(s)	4, 80, 142, 289, 292, 436
MhlI	GDGCHC	3 cut(s)	94, 159, 171
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	240, 408, 537
MluNI	TGGCCA	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	4 cut(s)	83, 179, 489, 638
Mox20I	TGGCCA	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	383, 647
MspI	CCGG	2 cut(s)	107, 177
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	4 cut(s)	154, 349, 668, 677
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	4 cut(s)	219, 250, 503, 553
NlaIV	GGNNCC	2 cut(s)	121, 333
NmuCI	GTSAC	3 cut(s)	179, 401, 635
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	74
PciI	ACATGT	1 cut(s)	549
PciSI	GCTCTTC	2 cut(s)	17, 155
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 72
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	5 cut(s)	79, 196, 485, 491, 650
PkrI	GCNGC	4 cut(s)	345, 456, 661, 664
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	172
PscI	ACATGT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	121, 333
PspPI	GGNCC	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	94
SapI	GCTCTTC	2 cut(s)	17, 155
SatI	GCNGC	4 cut(s)	344, 455, 660, 663
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	94, 159, 171
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	315
Sfr274I	CTCGAG	1 cut(s)	74
SfuI	TTCGAA	1 cut(s)	66
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	74, 356
SmoI	CTYRAG	2 cut(s)	74, 356
Sse9I	AATT	3 cut(s)	240, 408, 537
SsiI	CCGC	4 cut(s)	337, 341, 344, 381
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	235, 585
TaiI	ACGT	3 cut(s)	63, 174, 366
TaqI	TCGA	3 cut(s)	66, 75, 153
TasI	AATT	3 cut(s)	240, 408, 537
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	5 cut(s)	79, 196, 485, 491, 650
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	3 cut(s)	179, 401, 635
TseI	GCWGC	3 cut(s)	454, 659, 662
Tsp45I	GTSAC	3 cut(s)	179, 401, 635
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	2 cut(s)	132, 198
TspRI	CASTG	1 cut(s)	48
XceI	RCATGY	1 cut(s)	553
XhoI	CTCGAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.