Rh7AG489100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0020602
Physical Location & Seq
Reverse (-)
68951000 .. 68951413
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG489100.1

Sequence Viewer

Length: 414 bp
ATGGCTCAACTCTTCAGCCTCCAGAAGTGTCATCCTAACCCACTGGTTGTCGGAGATGACGTGTTCGAAGACCTCAAGAATCATGCGAGAGCTCGCTATTGCCATCCGGTAAGAAACGGAGCCATCGGCGATGTCCTGGAGAGAGCGTTCTTCGAGCCCAACCCAGAGCACGTGGTAGGTGACAGAGGAGTGCCGATTCGTTACAAAGGAATACCATGTGTCAACTCTCTGACTGTCCTAATTCCCATGGCCATCATCATTGGGCTTCAATACTGGAAGAAGATCGGAGCTATTTCAACCCTTCTCCTGCTCTCTACAGCACTCGCCCACGCCCCCTGCAAACGCTTCTCAAGTACGTCAAGGTCACTAGCCGTTGGGCTTTGTTTGGCCTCCTCCTTGCATACCTGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.0

Weight (kDa)

9.04

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020602)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0240311
rosa_laevigata RLG00000000686
rosa_multiflora Rmu_sc0002676.1_g000014
rosa_samantha Rh7AG489100 Rh7BG462000
rosa_wichuraiana Rw7G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 249
AcvI CACGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 2 cut(s) 269, 297
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 135
AloI GAACNNNNNNTCC 2 cut(s) 131, 163
AluBI AGCT 2 cut(s) 92, 290
AluI AGCT 2 cut(s) 92, 290
Alw21I GWGCWC 2 cut(s) 94, 171
AoxI GGCC 2 cut(s) 249, 387
AsuHPI GGTGA 1 cut(s) 191
AsuII TTCGAA 1 cut(s) 66
BalI TGGCCA 1 cut(s) 251
BanII GRGCYC 2 cut(s) 94, 159
BbrPI CACGTG 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 94, 171
BccI CCATC 3 cut(s) 111, 131, 260
BceAI ACGGC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 137
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 137
BmgBI CACGTC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 2 cut(s) 5, 158
Bpu14I TTCGAA 1 cut(s) 66
BpuEI CTTGAG 2 cut(s) 59, 334
BsaAI YACGTR 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 131, 161
Bse1I ACTGG 2 cut(s) 48, 278
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 31, 103
BseNI ACTGG 2 cut(s) 48, 278
BseRI GAGGAG 2 cut(s) 201, 382
BshFI GGCC 2 cut(s) 251, 389
BsiHKAI GWGCWC 2 cut(s) 94, 171
BsiSI CCGG 1 cut(s) 107
BsnI GGCC 2 cut(s) 251, 389
Bsp119I TTCGAA 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 94, 159, 171
Bsp143I GATC 1 cut(s) 282
Bsp19I CCATGG 1 cut(s) 246
BspANI GGCC 2 cut(s) 251, 389
BspLI GGNNCC 1 cut(s) 121
BspT104I TTCGAA 1 cut(s) 66
BsrI ACTGG 2 cut(s) 48, 278
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 17
BstBAI YACGTR 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 94
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 31, 103
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstSFI CTRYAG 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 75
BsuRI GGCC 2 cut(s) 251, 389
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 31, 103
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 354
CviAII CATG 3 cut(s) 83, 216, 247
CviQI GTAC 1 cut(s) 354
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 2 cut(s) 94, 159
Eco53kI GAGCTC 1 cut(s) 92
Eco72I CACGTG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 2 cut(s) 94, 159
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 86, 219, 250
FaiI YATR 4 cut(s) 84, 217, 248, 402
FatI CATG 3 cut(s) 82, 215, 246
FokI GGATG 2 cut(s) 18, 90
FriOI GRGCYC 2 cut(s) 94, 159
FspBI CTAG 1 cut(s) 368
GsuI CTGGAG 2 cut(s) 5, 158
HaeIII GGCC 2 cut(s) 251, 389
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 86, 219, 250
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 79, 196
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 53, 231, 287, 413
Hpy188III TCNNGA 2 cut(s) 22, 76
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 3 cut(s) 60, 171, 356
HpyCH4V TGCA 2 cut(s) 339, 400
HpySE526I ACGT 3 cut(s) 60, 171, 356
Hsp92II CATG 3 cut(s) 86, 219, 250
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 119, 287
LpnPI CCDG 9 cut(s) 29, 35, 120, 122, 149, 177, 259, 320, 349
MaeI CTAG 1 cut(s) 368
MaeII ACGT 3 cut(s) 60, 171, 356
MaeIII GTNAC 3 cut(s) 179, 200, 363
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 5 cut(s) 4, 80, 142, 289, 292
MhlI GDGCHC 3 cut(s) 94, 159, 171
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 1 cut(s) 240
MluNI TGGCCA 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 5 cut(s) 29, 83, 179, 400, 403
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
NcoI CCATGG 1 cut(s) 246
NdeII GATC 1 cut(s) 282
NlaIII CATG 3 cut(s) 86, 219, 250
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 179, 363
NspV TTCGAA 1 cut(s) 66
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PfeI GAWTC 2 cut(s) 79, 196
PfoI TCCNGGA 1 cut(s) 135
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 135
PspCI CACGTG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SacI GAGCTC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 3 cut(s) 94, 159, 171
SetI ASST 9 cut(s) 63, 75, 94, 174, 181, 292, 359, 365, 407
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 74, 349
SmoI CTYRAG 2 cut(s) 74, 349
Sse9I AATT 1 cut(s) 240
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 3 cut(s) 63, 174, 359
TaqI TCGA 2 cut(s) 66, 153
TasI AATT 1 cut(s) 240
TfiI GAWTC 2 cut(s) 79, 196
TscAI CASTG 1 cut(s) 48
TseFI GTSAC 2 cut(s) 179, 363
Tsp45I GTSAC 2 cut(s) 179, 363
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 48
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.