Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0020602

Physical Location & Seq

Genomic Coordinates Reverse (-)

63865602 .. 63871175

Gene Structure 5574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTAGGCTCTTCAGCCTGCAGAAGCGTCGTCCTAACCCACTGGTAGTCGGAGATGACGTCTTTGAAGACCTCAAGAATCAGGCGAGAGCTCGCCATCGCCATCCAGTAAGAAACGGAGCCATCGGCGATGTCCTCGAGAGAGCACTCTTCGAGCCCAACCCGGAGCACGTGGCCGGTGATGGAGGAACGCAGCTGCGTTACACAGGAATACGAGGACTCAACGCCCTGACTTTCTTACTTCCCATGGCCGTCATCATTGTGCTTCAGTACTCAAAGAAAATCGGAGCCATTTCAACCGTTCTTCTGCTTTCAACAACTCTCGCCCTCACCCTCCGCCCGCCGCAGTCGCTTCTCGAGTACGTCGAGGCTAAGCTCCCCGCTGTGTTGAAGCTGTATCGTGACCAAATTACGGCTGATATGAAGACCGCTGTGTTTGCAGAGCTGCTTCCCATTCTTGTTTCCCGACCTCTGGAATCTGATTCTACACATGGAGAGCGAGTTGCAGATGCCAACGTGAAACAGGCTATTGAGTGGATTATGTGCAACCTCGGTGGTCACTATTCAGCTGATTCAGTTGCTGCTGCACTTGCTGTTGGTGCTGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps54

Protein Analysis

203

Amino Acids

22.13

Weight (kDa)

7.82

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020602)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0240311
rosa_laevigata	RLG00000000686
rosa_multiflora	Rmu_sc0002676.1_g000014
rosa_samantha	Rh7AG489100 Rh7BG462000
rosa_wichuraiana	Rw7G040920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AciI	CCGC	5 cut(s)	337, 341, 344, 381, 429
AcoI	YGGCCR	2 cut(s)	174, 249
AcuI	CTGAAG	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	2 cut(s)	272, 362
AfiI	CCNNNNNNNGG	2 cut(s)	412, 472
AgsI	TTSAA	4 cut(s)	68, 297, 315, 391
AluBI	AGCT	6 cut(s)	92, 196, 376, 394, 445, 569
AluI	AGCT	6 cut(s)	92, 196, 376, 394, 445, 569
Alw21I	GWGCWC	3 cut(s)	94, 148, 171
AlwNI	CAGNNNCTG	1 cut(s)	581
Ama87I	CYCGRG	2 cut(s)	137, 356
AoxI	GGCC	2 cut(s)	174, 249
ApeKI	GCWGC	5 cut(s)	193, 196, 445, 581, 584
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	2 cut(s)	191, 322
AvaI	CYCGRG	2 cut(s)	137, 356
BanII	GRGCYC	2 cut(s)	94, 159
BbrPI	CACGTG	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	75, 431
Bbv12I	GWGCWC	3 cut(s)	94, 148, 171
BbvI	GCAGC	5 cut(s)	183, 205, 432, 568, 571
BccI	CCATC	4 cut(s)	105, 111, 131, 176
BceAI	ACGGC	2 cut(s)	236, 429
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcnI	CCSGG	1 cut(s)	164
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	6 cut(s)	194, 197, 344, 446, 582, 585
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	6 cut(s)	195, 198, 345, 447, 583, 586
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	2 cut(s)	137, 356
BmiI	GGNNCC	2 cut(s)	121, 289
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	2 cut(s)	75, 431
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	246, 550
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 472
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	48, 107
BseDI	CCNNGG	2 cut(s)	246, 550
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	412, 472
BseNI	ACTGG	2 cut(s)	48, 107
BseXI	GCAGC	5 cut(s)	183, 205, 432, 568, 571
BsgI	GTGCAG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	176, 251
BsiHKAI	GWGCWC	3 cut(s)	94, 148, 171
BsiHKCI	CYCGRG	2 cut(s)	137, 356
BsiSI	CCGG	2 cut(s)	164, 177
BslI	CCNNNNNNNGG	2 cut(s)	412, 472
BsnI	GGCC	2 cut(s)	176, 251
BsoBI	CYCGRG	2 cut(s)	137, 356
Bsp1286I	GDGCHC	4 cut(s)	94, 148, 159, 171
Bsp1720I	GCTNAGC	1 cut(s)	372
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	5 cut(s)	337, 341, 344, 381, 429
BspANI	GGCC	2 cut(s)	176, 251
BspLI	GGNNCC	2 cut(s)	121, 289
BspMAI	CTGCAG	1 cut(s)	24
BspQI	GCTCTTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	48, 107
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	246, 550
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	2 cut(s)	17, 155
BstACI	GRCGYC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	20, 94, 341
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	4 cut(s)	349, 437, 590, 599
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	5 cut(s)	183, 205, 432, 568, 571
BstV2I	GAAGAC	2 cut(s)	75, 431
BsuRI	GGCC	2 cut(s)	176, 251
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	2 cut(s)	83, 144
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	3 cut(s)	20, 94, 341
CaiI	CAGNNNCTG	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	176
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	271, 361
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	2 cut(s)	247, 491
CviQI	GTAC	2 cut(s)	271, 361
DdeI	CTNAG	1 cut(s)	372
EaeI	YGGCCR	2 cut(s)	174, 249
Eam1104I	CTCTTC	2 cut(s)	17, 155
EarI	CTCTTC	2 cut(s)	17, 155
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	94, 159
Eco53kI	GAGCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	2 cut(s)	137, 356
EcoICRI	GAGCTC	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	2 cut(s)	94, 159
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	250, 494
FaiI	YATR	4 cut(s)	248, 422, 492, 542
FatI	CATG	2 cut(s)	246, 490
FauI	CCCGC	2 cut(s)	348, 388
Fnu4HI	GCNGC	6 cut(s)	194, 197, 344, 446, 582, 585
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	2 cut(s)	94, 159
Fsp4HI	GCNGC	6 cut(s)	194, 197, 344, 446, 582, 585
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	6 cut(s)	194, 197, 344, 446, 582, 585
HaeIII	GGCC	2 cut(s)	176, 251
HapII	CCGG	2 cut(s)	164, 177
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	250, 494
HinfI	GANTC	5 cut(s)	79, 219, 476, 482, 572
HpaII	CCGG	2 cut(s)	164, 177
HphI	GGTGA	2 cut(s)	191, 322
Hpy188I	TCNGA	3 cut(s)	53, 287, 481
Hpy188III	TCNNGA	6 cut(s)	76, 139, 356, 401, 465, 473
Hpy99I	CGWCG	2 cut(s)	33, 368
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	4 cut(s)	60, 171, 363, 516
HpyCH4V	TGCA	5 cut(s)	22, 440, 506, 546, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	349, 437, 590, 599
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	4 cut(s)	60, 171, 363, 516
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	250, 494
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	4 cut(s)	119, 166, 287, 381
Lsp1109I	GCAGC	5 cut(s)	183, 205, 432, 568, 571
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	4 cut(s)	60, 171, 363, 516
MaeIII	GTNAC	3 cut(s)	200, 401, 557
MboII	GAAGA	5 cut(s)	4, 80, 142, 296, 436
MhlI	GDGCHC	4 cut(s)	94, 148, 159, 171
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	9 cut(s)	83, 146, 179, 209, 338, 344, 361, 480, 560
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	4 cut(s)	196, 383, 431, 569
MspI	CCGG	2 cut(s)	164, 177
MspR9I	CCNGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	349, 437, 590, 599
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	246
NlaIII	CATG	2 cut(s)	250, 494
NlaIV	GGNNCC	2 cut(s)	121, 289
NmuCI	GTSAC	2 cut(s)	401, 557
PaeR7I	CTCGAG	2 cut(s)	137, 356
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	2 cut(s)	57, 363
PfeI	GAWTC	4 cut(s)	79, 476, 482, 572
PkrI	GCNGC	6 cut(s)	195, 198, 345, 447, 583, 586
PleI	GAGTC	1 cut(s)	213
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	94
PspCI	CACGTG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	121, 289
PstI	CTGCAG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	581
PvuII	CAGCTG	2 cut(s)	196, 569
RsaI	GTAC	2 cut(s)	272, 362
RsaNI	GTAC	2 cut(s)	271, 361
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	17
SatI	GCNGC	6 cut(s)	194, 197, 344, 446, 582, 585
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	4 cut(s)	94, 148, 159, 171
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	20
Sfr274I	CTCGAG	2 cut(s)	137, 356
SlaI	CTCGAG	2 cut(s)	137, 356
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	3 cut(s)	74, 137, 356
SmoI	CTYRAG	3 cut(s)	74, 137, 356
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	5 cut(s)	337, 341, 344, 381, 429
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	4 cut(s)	63, 174, 366, 519
TaqI	TCGA	4 cut(s)	138, 153, 357, 366
TasI	AATT	1 cut(s)	408
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	4 cut(s)	79, 476, 482, 572
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	401, 557
TseI	GCWGC	5 cut(s)	193, 196, 445, 581, 584
Tsp45I	GTSAC	2 cut(s)	401, 557
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	48
XhoI	CTCGAG	2 cut(s)	137, 356
XspI	CTAG	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.