RLG00000000770

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019981
Physical Location & Seq
Reverse (-)
5189295 .. 5196358
7064 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000770

Sequence Viewer

Length: 549 bp
ATGGAGAAGAGCAGAGAGGAGTGCGAGGTTGAGAGGCTGGGGCCTGGGAGTCTTCGATGGAGGAGGAGAGAGGCTCGATTAGGGTTTCGAAATTGGGAGTGTTCGATGGAGGAAGAGAGAGGCTCGATTAGGGTTTCGAAATTGGGAGTGGAGTGCTCGAACGGCAGAACGCGATGTTTAGGGCTGTTTAGAGCTGATATCAACGACACGTCGTACGCAATATTAGAGCTTCGGGTCGGGTCGGTTAAAACGGTACACAGTGACGACGATACTGGCATTGATGCAGGAAGTGGCTCACTTTTTGAGAACAAAGTAGCTGTGAAGAAACTCCATCTGCTACGAAGTGATGACAAGAATTTTCAGAAGGAATTCTTGAATGAAGTCGGGGAACTAACTGAGATAAACGATGAAGCGGAGTTGGAGTGGAGTAAAGGGTTAAATATCAGCAGAGGTGTTGCTCATGCCTTGTGTGACATGCACCACGATTGCTTGCCACCAATTGTGCATCAAGACATATCGAGCAAGAACATTTCGCTGGATTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

183

Amino Acids

20.57

Weight (kDa)

5.35

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019981)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000770 RLG00000007033
rosa_roxburghii Rroxscaffold_4G00320130 Rroxscaffold_5G00344980 Rroxscaffold_5G00355450
rosa_rugosa Rorug02G0211000.1
rosa_samantha Rh4CG067500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 172
AciI CCGC 1 cut(s) 413
AcsI RAATTY 2 cut(s) 355, 368
AfaI GTAC 2 cut(s) 215, 255
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 1 cut(s) 376
AjiI CACGTC 1 cut(s) 210
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 3 cut(s) 194, 229, 317
AluI AGCT 3 cut(s) 194, 229, 317
Alw21I GWGCWC 1 cut(s) 158
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 2 cut(s) 355, 368
Asp700I GAANNNNTTC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 41
AsuII TTCGAA 2 cut(s) 88, 137
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 158
BccI CCATC 3 cut(s) 51, 100, 339
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 45
BmgBI CACGTC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 271, 514
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 4 cut(s) 58, 90, 107, 139
Bpu14I TTCGAA 2 cut(s) 88, 137
BsaJI CCNNGG 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bse1I ACTGG 1 cut(s) 277
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 3 cut(s) 32, 76, 79
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 158
BsiWI CGTACG 1 cut(s) 213
BsnI GGCC 1 cut(s) 43
Bsp119I TTCGAA 2 cut(s) 88, 137
Bsp1286I GDGCHC 1 cut(s) 158
BspACI CCGC 1 cut(s) 413
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 2
BspT104I TTCGAA 2 cut(s) 88, 137
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 253, 260
Bst6I CTCTTC 2 cut(s) 2, 108
BstBI TTCGAA 2 cut(s) 88, 137
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 1 cut(s) 396
BstFNI CGCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 491
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 214, 254
CviAII CATG 2 cut(s) 461, 475
CviJI RGCY 9 cut(s) 37, 43, 74, 123, 184, 194, 229, 294, 317
CviKI_1 RGCY 9 cut(s) 37, 43, 74, 123, 184, 194, 229, 294, 317
CviQI GTAC 2 cut(s) 214, 254
DdeI CTNAG 1 cut(s) 396
Eam1104I CTCTTC 2 cut(s) 2, 108
EarI CTCTTC 2 cut(s) 2, 108
Eco32I GATATC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 43
EcoRV GATATC 1 cut(s) 199
FaeI CATG 2 cut(s) 464, 478
FaiI YATR 3 cut(s) 462, 476, 515
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FatI CATG 2 cut(s) 460, 474
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 2 cut(s) 464, 478
HinfI GANTC 2 cut(s) 49, 539
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 363, 544
Hpy188III TCNNGA 2 cut(s) 373, 509
Hpy8I GTNNAC 1 cut(s) 256
Hpy99I CGWCG 2 cut(s) 214, 269
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 253, 260
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 284, 478, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 2 cut(s) 464, 478
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 6 cut(s) 23, 30, 57, 258, 270, 521
LweI GCATC 2 cut(s) 271, 514
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 260, 470
MboII GAAGA 4 cut(s) 19, 44, 125, 334
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 5 cut(s) 91, 140, 355, 368, 498
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 9 cut(s) 10, 19, 27, 54, 57, 64, 103, 113, 443
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 2 cut(s) 246, 437
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 162
NlaIII CATG 2 cut(s) 464, 478
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 260, 470
NspI RCATGY 1 cut(s) 478
NspV TTCGAA 2 cut(s) 88, 137
PciSI GCTCTTC 1 cut(s) 2
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 539
Pfl23II CGTACG 1 cut(s) 213
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 43
PspLI CGTACG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 41
RsaI GTAC 2 cut(s) 215, 255
RsaNI GTAC 2 cut(s) 214, 254
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 2 cut(s) 246, 437
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 158
SetI ASST 6 cut(s) 30, 196, 212, 231, 319, 454
SfaNI GCATC 2 cut(s) 271, 514
SfuI TTCGAA 2 cut(s) 88, 137
Sse9I AATT 5 cut(s) 91, 140, 355, 368, 498
SsiI CCGC 1 cut(s) 413
SspI AATATT 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 253, 260
TaiI ACGT 1 cut(s) 212
TaqI TCGA 8 cut(s) 55, 76, 88, 104, 125, 137, 158, 518
TasI AATT 5 cut(s) 91, 140, 355, 368, 498
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 2 cut(s) 246, 437
Tru9I TTAA 2 cut(s) 246, 437
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 2 cut(s) 260, 470
Tsp45I GTSAC 2 cut(s) 260, 470
TspDTI ATGAA 2 cut(s) 393, 423
TspRI CASTG 1 cut(s) 265
XapI RAATTY 2 cut(s) 355, 368
XceI RCATGY 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.