RLG00000007033

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019981
Physical Location & Seq
Forward (+)
12883673 .. 12886257
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007033

Sequence Viewer

Length: 615 bp
ATGGAGGAGAGCAGAGAGGAGTGCGAGGTTGAGAGGCTGGGGCCTGGGAGTCTTCGATGGAGGAGGAGAGAGGCTCGATTAGGGTTTCGAAATTGGGAGTGTTCGATGGAGGAGGAGAGAGGCTCGATTAGGGTTTCGAAATTGGGAGTGGAGTGCTCGAACGGCAGAACGCGATGTTTAGGGCTGTTTAGAGCTGATATCAATGACACGTCGTACGCAATATTAGAGCTTCGGGTCGGGTCGGTTAAAACGCGAAGCCGACATTCGGGCTCCGTCTCATGCCCATCCAACCGATTTCTTAAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTTGCTTTATGGGGTTCATTTACAGGTTCAGCAGGTCAAAGACATAGACAAACTGGGTTTTATGGGCCTGGTTCAAGAAGAGCTTGTGTTGATAGAAGACTGGATTGTTGATTGGCTTCAATATCTCCTGGAAATAGTCATACCTTTTACAAATTTTACTAATGCTCATTCTGGTGCAACTCTAGTTAATGCCAGATGTGCTACAGCACTACAAACCAAATCTGTTACGCACCAGGCTCCAACAATCACAAGTCTTCCTCGTAAGGCAAATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.05

Weight (kDa)

8.51

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019981)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000770 RLG00000007033
rosa_roxburghii Rroxscaffold_4G00320130 Rroxscaffold_5G00344980 Rroxscaffold_5G00355450
rosa_rugosa Rorug02G0211000.1
rosa_samantha Rh4CG067500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 361
AccII CGCG 2 cut(s) 172, 253
AcsI RAATTY 2 cut(s) 490, 607
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 265
AflII CTTAAG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 413, 458
AjiI CACGTC 1 cut(s) 210
AjnI CCWGG 4 cut(s) 43, 405, 465, 570
AluBI AGCT 3 cut(s) 194, 229, 421
AluI AGCT 3 cut(s) 194, 229, 421
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 280
AoxI GGCC 3 cut(s) 41, 312, 403
ApoI RAATTY 2 cut(s) 490, 607
AspS9I GGNCC 2 cut(s) 41, 403
AsuII TTCGAA 2 cut(s) 88, 137
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 3 cut(s) 44, 441, 584
Bbv12I GWGCWC 1 cut(s) 158
BccI CCATC 3 cut(s) 51, 100, 292
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 4 cut(s) 45, 407, 467, 572
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 521
BfmI CTRYAG 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 361
Bme1390I CCNGG 4 cut(s) 45, 407, 467, 572
BmgBI CACGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 41, 403
BmiI GGNNCC 3 cut(s) 42, 271, 576
BmrFI CCNGG 4 cut(s) 45, 407, 467, 572
BmrI ACTGGG 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 401
BpiI GAAGAC 3 cut(s) 44, 441, 584
BplI GAGNNNNNCTC 4 cut(s) 58, 90, 107, 139
Bpu14I TTCGAA 2 cut(s) 88, 137
BsaJI CCNNGG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 396, 443
BseBI CCWGG 4 cut(s) 45, 407, 467, 572
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 396, 443
BseRI GAGGAG 6 cut(s) 20, 32, 76, 79, 125, 128
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 2 cut(s) 172, 253
BshFI GGCC 3 cut(s) 43, 314, 405
BsiHKAI GWGCWC 1 cut(s) 158
BsiWI CGTACG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsnI GGCC 3 cut(s) 43, 314, 405
Bsp119I TTCGAA 2 cut(s) 88, 137
Bsp1286I GDGCHC 2 cut(s) 158, 272
BspANI GGCC 3 cut(s) 43, 314, 405
BspFNI CGCG 2 cut(s) 172, 253
BspLI GGNNCC 3 cut(s) 42, 271, 576
BspMI ACCTGC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 411
BspT104I TTCGAA 2 cut(s) 88, 137
BspTI CTTAAG 1 cut(s) 299
BsrI ACTGG 2 cut(s) 396, 443
BssECI CCNNGG 1 cut(s) 44
Bst2UI CCWGG 4 cut(s) 45, 407, 467, 572
Bst6I CTCTTC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 299
BstBI TTCGAA 2 cut(s) 88, 137
BstF5I GGATG 1 cut(s) 284
BstFNI CGCG 2 cut(s) 172, 253
BstMAI GTCTC 1 cut(s) 280
BstMWI GCNNNNNNNGC 3 cut(s) 162, 340, 536
BstNI CCWGG 4 cut(s) 45, 407, 467, 572
BstSCI CCNGG 4 cut(s) 43, 405, 465, 570
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 2 cut(s) 172, 253
BstV2I GAAGAC 3 cut(s) 44, 441, 584
BsuRI GGCC 3 cut(s) 43, 314, 405
BtgZI GCGATG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 284
BveI ACCTGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 41, 403
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 279
CviQI GTAC 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 41
EcoRII CCWGG 4 cut(s) 43, 405, 465, 570
EcoRV GATATC 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 1 cut(s) 282
FaiI YATR 5 cut(s) 280, 348, 383, 401, 479
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 1 cut(s) 278
FokI GGATG 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 272
FspBI CTAG 1 cut(s) 521
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 3 cut(s) 43, 314, 405
Hin1II CATG 1 cut(s) 282
HinfI GANTC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 413
Hpy99I CGWCG 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 340, 536
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 1 cut(s) 282
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 2 cut(s) 275, 580
MaeI CTAG 1 cut(s) 521
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 562
MboII GAAGA 4 cut(s) 44, 428, 446, 584
MhlI GDGCHC 2 cut(s) 158, 272
MluCI AATT 4 cut(s) 91, 140, 490, 607
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 2 cut(s) 312, 602
MseI TTAA 4 cut(s) 246, 300, 525, 613
MslI CAYNNNNRTG 1 cut(s) 510
MspCI CTTAAG 1 cut(s) 299
MspR9I CCNGG 4 cut(s) 45, 407, 467, 572
MvaI CCWGG 4 cut(s) 45, 407, 467, 572
MvnI CGCG 2 cut(s) 172, 253
MwoI GCNNNNNNNGC 3 cut(s) 162, 340, 536
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 3 cut(s) 42, 271, 576
NspV TTCGAA 2 cut(s) 88, 137
PciSI GCTCTTC 1 cut(s) 411
Pfl23II CGTACG 1 cut(s) 213
PfoI TCCNGGA 1 cut(s) 465
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Psp6I CCWGG 4 cut(s) 43, 405, 465, 570
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 4 cut(s) 43, 405, 465, 570
PspLI CGTACG 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 42, 271, 576
PspPI GGNCC 2 cut(s) 41, 403
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 4 cut(s) 246, 300, 525, 613
Sau96I GGNCC 2 cut(s) 41, 403
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 4 cut(s) 45, 407, 467, 572
SduI GDGCHC 2 cut(s) 158, 272
SetI ASST 9 cut(s) 30, 196, 212, 231, 306, 366, 375, 423, 484
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 2 cut(s) 88, 137
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 4 cut(s) 91, 140, 490, 607
SspI AATATT 1 cut(s) 222
SspMI CTAG 1 cut(s) 521
StyD4I CCNGG 4 cut(s) 43, 405, 465, 570
TaiI ACGT 1 cut(s) 212
TaqI TCGA 7 cut(s) 55, 76, 88, 104, 125, 137, 158
TasI AATT 4 cut(s) 91, 140, 490, 607
Tru1I TTAA 4 cut(s) 246, 300, 525, 613
Tru9I TTAA 4 cut(s) 246, 300, 525, 613
TspDTI ATGAA 1 cut(s) 344
TspGWI ACGGA 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 299
XapI RAATTY 2 cut(s) 490, 607
XspI CTAG 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.