Rroxscaffold_5G00344980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019981
Physical Location & Seq
Reverse (-)
15179551 .. 15183401
3851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344980.1

Sequence Viewer

Length: 813 bp
ATGATCTCCATGAAAAACCCGACCTTCGACGCCGGTCTAGTGACCGGAGAAGGCCGGAATCGCCGGAAATCGGCAAAACTATCAAATCGCATTCGTTACCTTTCCGGCGAGAAATCGAGCTTCTCCGGCCAAATCGTTGCAAAACACCACCGGCAACGTGTCGAGGGGAAGGAGACGAGCTCGGGGATGGCGGAACTCGCCGTGGGTCGGCGGAGGAGGAAGAAATCGGAGGCGCTCCGATTCGGCCGAAAAGGGAAGGAAATCGGGGGAGAGGAGAGAGAGAGACTTACCCGGTTGGGTAGATTAATTATTCTTAAAATTCTGGCTTTTCTGGGTTGCAAGAAAAAGGTTATTAGCAGATTCTTCTGTAGGTCAAACCCTTTGTGTTTATCGCTGCCATTTATCGGGCGAGTTCATCTCGAGGATGCTCTGAACATTGCAACGCATTCCCTCGTTGATATGGAAGAGCTGAGGCAAGACTCTGTTGAACGAGATGATATTAAGGAACCTTTTACTGAGGTTCAGCAGGTCAAAGACATATTCAAGCTGGGTTTTATGGGTCTGGTTCTAGCAGAGCTTATGTTGATAGAAGAGTACTGGTACATTTTCAGATTAGACTGGTGGGGATTGGTGGAGGGTTGTCACTTGAGACATGAAAACCAATCATACCAGTTGCGGGGTCTAGTCAAATGCAGTGCTTCTGTAATATGTGCTTATGCTTTGAATGCCCGATGTGCTACAGCACTACAAACCAAATCTGTTACACACCAGGCTCCAACAATCACAAGTCTTCCTCGTAAGGCGAATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.72

Weight (kDa)

9.87

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019981)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000770 RLG00000007033
rosa_roxburghii Rroxscaffold_4G00320130 Rroxscaffold_5G00344980 Rroxscaffold_5G00355450
rosa_rugosa Rorug02G0211000.1
rosa_samantha Rh4CG067500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 517
AciI CCGC 3 cut(s) 191, 211, 676
AcoI YGGCCR 2 cut(s) 127, 244
AcsI RAATTY 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 596, 602
AfiI CCNNNNNNNGG 4 cut(s) 70, 207, 404, 676
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 3 cut(s) 488, 544, 724
AjnI CCWGG 1 cut(s) 768
AluBI AGCT 5 cut(s) 120, 180, 469, 547, 577
AluI AGCT 5 cut(s) 120, 180, 469, 547, 577
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 3 cut(s) 167, 277, 643
Ama87I CYCGRG 2 cut(s) 181, 419
AoxI GGCC 3 cut(s) 52, 127, 244
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 318
AseI ATTAAT 1 cut(s) 305
AspLEI GCGC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 292
AvaI CYCGRG 2 cut(s) 181, 419
BanII GRGCYC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 782
Bbv12I GWGCWC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 381
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 770
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 3 cut(s) 167, 277, 643
BfaI CTAG 3 cut(s) 38, 569, 683
BfmI CTRYAG 2 cut(s) 367, 738
BfoI RGCGCY 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
BmcAI AGTACT 1 cut(s) 596
Bme1390I CCNGG 2 cut(s) 292, 770
BmeT110I CYCGRG 2 cut(s) 181, 419
BmiI GGNNCC 2 cut(s) 507, 774
BmrFI CCNGG 2 cut(s) 292, 770
BmsI GCATC 1 cut(s) 415
BoxI GACNNNNGTC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 782
BplI GAGNNNNNCTC 4 cut(s) 164, 196, 402, 434
Bpu10I CCTNAGC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 207, 404, 676
Bse118I RCCGGY 2 cut(s) 32, 150
Bse1I ACTGG 3 cut(s) 602, 623, 670
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 192, 430
BseLI CCNNNNNNNGG 4 cut(s) 70, 207, 404, 676
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 2 cut(s) 461, 507
BseNI ACTGG 3 cut(s) 602, 623, 670
BseRI GAGGAG 2 cut(s) 229, 287
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 381
BseYI CCCAGC 1 cut(s) 547
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 54, 129, 246
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 182
BsiHKCI CYCGRG 2 cut(s) 181, 419
BsiSI CCGG 8 cut(s) 33, 45, 55, 64, 105, 126, 151, 292
BslI CCNNNNNNNGG 4 cut(s) 70, 207, 404, 676
BsmAI GTCTC 3 cut(s) 167, 277, 643
BsmBI CGTCTC 1 cut(s) 167
BsmI GAATGC 3 cut(s) 90, 445, 730
BsnI GGCC 3 cut(s) 54, 129, 246
BsoBI CYCGRG 2 cut(s) 181, 419
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 3 cut(s) 191, 211, 676
BspANI GGCC 3 cut(s) 54, 129, 246
BspCNI CTCAG 2 cut(s) 462, 508
BspLI GGNNCC 2 cut(s) 507, 774
BspMI ACCTGC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 2 cut(s) 32, 150
BsrI ACTGG 3 cut(s) 602, 623, 670
BssAI RCCGGY 2 cut(s) 32, 150
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 3
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 770
Bst6I CTCTTC 2 cut(s) 459, 585
BstACI GRCGYC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 470, 516
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 192, 430
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 3 cut(s) 167, 277, 643
BstMBI GATC 1 cut(s) 3
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 5 cut(s) 60, 126, 197, 725, 734
BstNI CCWGG 1 cut(s) 770
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 290, 768
BstSFI CTRYAG 2 cut(s) 367, 738
BstV1I GCAGC 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 782
BstZI CGGCCG 1 cut(s) 244
BsuRI GGCC 3 cut(s) 54, 129, 246
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 192, 430
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 700
BveI ACCTGC 1 cut(s) 517
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 2 cut(s) 32, 150
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 595, 601
CviAII CATG 2 cut(s) 10, 653
CviQI GTAC 2 cut(s) 595, 601
DdeI CTNAG 2 cut(s) 470, 516
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 2 cut(s) 127, 244
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 459, 585
EarI CTCTTC 2 cut(s) 459, 585
EciI GGCGGA 2 cut(s) 206, 226
Ecl136II GAGCTC 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 182
Eco52I CGGCCG 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 180
Eco88I CYCGRG 2 cut(s) 181, 419
EcoICRI GAGCTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 768
EcoT38I GRGCYC 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 2 cut(s) 13, 656
FaiI YATR 9 cut(s) 11, 461, 539, 557, 581, 654, 667, 709, 717
FatI CATG 2 cut(s) 9, 652
FauI CCCGC 1 cut(s) 669
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 2 cut(s) 199, 437
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 3 cut(s) 38, 569, 683
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 395
GsaI CCCAGC 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 3 cut(s) 54, 129, 246
HapII CCGG 8 cut(s) 33, 45, 55, 64, 105, 126, 151, 292
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 13, 656
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 4 cut(s) 58, 240, 360, 479
HpaII CCGG 8 cut(s) 33, 45, 55, 64, 105, 126, 151, 292
Hpy188I TCNGA 4 cut(s) 229, 239, 432, 611
Hpy188III TCNNGA 1 cut(s) 419
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 34, 44, 163, 250
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 140, 339, 440, 693
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 126, 197, 725, 734
HpyF3I CTNAG 2 cut(s) 470, 516
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 13, 656
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 240, 778
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 1 cut(s) 415
MaeI CTAG 3 cut(s) 38, 569, 683
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 4 cut(s) 40, 95, 641, 760
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 5 cut(s) 232, 355, 476, 602, 782
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 2 cut(s) 306, 318
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 800
MseI TTAA 4 cut(s) 305, 315, 501, 811
MspI CCGG 8 cut(s) 33, 45, 55, 64, 105, 126, 151, 292
MspR9I CCNGG 2 cut(s) 292, 770
Mva1269I GAATGC 3 cut(s) 90, 445, 730
MvaI CCWGG 1 cut(s) 770
MwoI GCNNNNNNNGC 5 cut(s) 60, 126, 197, 725, 734
NciI CCSGG 1 cut(s) 292
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 13, 656
NlaIV GGNNCC 2 cut(s) 507, 774
NmuCI GTSAC 2 cut(s) 40, 641
PaeR7I CTCGAG 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 459
PctI GAATGC 3 cut(s) 90, 445, 730
PfeI GAWTC 3 cut(s) 58, 240, 360
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
PshAI GACNNNNGTC 1 cut(s) 33
PshBI ATTAAT 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 768
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 2 cut(s) 507, 774
RsaI GTAC 2 cut(s) 596, 602
RsaNI GTAC 2 cut(s) 595, 601
SacI GAGCTC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 4 cut(s) 305, 315, 501, 811
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 1 cut(s) 3
ScaI AGTACT 1 cut(s) 596
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 2 cut(s) 292, 770
SduI GDGCHC 1 cut(s) 182
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 2 cut(s) 367, 738
Sfr274I CTCGAG 1 cut(s) 419
SlaI CTCGAG 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 419, 646
SmoI CTYRAG 2 cut(s) 419, 646
Sse9I AATT 2 cut(s) 306, 318
SsiI CCGC 3 cut(s) 191, 211, 676
SspMI CTAG 3 cut(s) 38, 569, 683
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 290, 768
TaiI ACGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 27, 116, 162, 420
TasI AATT 2 cut(s) 306, 318
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 3 cut(s) 58, 240, 360
Tru1I TTAA 4 cut(s) 305, 315, 501, 811
Tru9I TTAA 4 cut(s) 305, 315, 501, 811
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 2 cut(s) 40, 641
TseI GCWGC 1 cut(s) 394
Tsp45I GTSAC 2 cut(s) 40, 641
TspDTI ATGAA 3 cut(s) 26, 404, 669
TspRI CASTG 1 cut(s) 700
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 419
XspI CTAG 3 cut(s) 38, 569, 683
ZrmI AGTACT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.