Rroxscaffold_4G00320130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0019981
Physical Location & Seq
Forward (+)
48542415 .. 48545589
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320130.1

Sequence Viewer

Length: 540 bp
ATGCTGGTTCGATCGATTCGGCCACCACACCGCAAATTGAGAAGCAAGACCTTAGGGAAAATGATCTCCATGAAAAACCCGACCTTCGACGCCGGTCTAGTGACCGGAGAAGGCCGGAATCGCGAGAAATCGGCAAAACTATCAAATCGCATTCGTTACCTTTCGGCGAGAAATCGAGCTTCTCGGCCAAATCGTTGCAAAACACCACCGGCAATGTGTCGAGGGGAAGGAGACGAGCTCGGGGATGGCCGAACTCGCCGTGGGTCGGCCGGAGGAGGAAGAAATCGGAGGCGCTCCGATTCGGCCGAAAAGGGAAGGAAATCGGGGGAGAGGAGAGAGAGAGACTTACCCGCAACCCTGCCGAACTCAACATACCAAAAGAAAGGTTTACCTCCATTCGTGACCGAAGAACCCTATGTTCAAAGCAACACGCAATTGTCTCGAATGTGTCACCGAAACACAAAGCAAAATTTTGAGAGTAGAAGGCTCAAGGGTAAGCGAAGTCGATTACGTGAGTGTAAGGCACCCCAAATACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.37

Weight (kDa)

11.51

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019981)

Species Orthologous Gene IDs
rosa_laevigata RLG00000000770 RLG00000007033
rosa_roxburghii Rroxscaffold_4G00320130 Rroxscaffold_5G00344980 Rroxscaffold_5G00355450
rosa_rugosa Rorug02G0211000.1
rosa_samantha Rh4CG067500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 523
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 31, 351
AcoI YGGCCR 5 cut(s) 20, 185, 247, 267, 303
AcsI RAATTY 1 cut(s) 469
AcyI GRCGYC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 2 cut(s) 179, 238
AluI AGCT 2 cut(s) 179, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 3 cut(s) 225, 336, 444
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 6 cut(s) 20, 112, 185, 247, 267, 303
ApoI RAATTY 1 cut(s) 469
AspLEI GCGC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 443
AvaI CYCGRG 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 52
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 243
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BcoDI GTCTC 3 cut(s) 225, 336, 444
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 525
BoxI GACNNNNGTC 1 cut(s) 93
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpuEI CTTGAG 1 cut(s) 473
Bsa29I ATCGAT 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 2 cut(s) 92, 208
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 288, 346
BseX3I CGGCCG 2 cut(s) 267, 303
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 3 cut(s) 14, 270, 306
BshFI GGCC 6 cut(s) 22, 114, 187, 249, 269, 305
BshNI GGYRCC 1 cut(s) 523
BshVI ATCGAT 1 cut(s) 14
BsiEI CGRYCG 3 cut(s) 14, 270, 306
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 5 cut(s) 93, 105, 115, 209, 270
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 3 cut(s) 225, 336, 444
BsmBI CGTCTC 1 cut(s) 225
BsmI GAATGC 1 cut(s) 150
BsnI GGCC 6 cut(s) 22, 114, 187, 249, 269, 305
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 11, 63
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 2 cut(s) 31, 351
BspANI GGCC 6 cut(s) 22, 114, 187, 249, 269, 305
BspDI ATCGAT 1 cut(s) 14
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 2 cut(s) 92, 208
BssAI RCCGGY 2 cut(s) 92, 208
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 11, 63
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 512
BstDEI CTNAG 1 cut(s) 52
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 2 cut(s) 14, 66
BstMAI GTCTC 3 cut(s) 225, 336, 444
BstMBI GATC 2 cut(s) 11, 63
BstMCI CGRYCG 3 cut(s) 14, 270, 306
BstMWI GCNNNNNNNGC 2 cut(s) 120, 255
BstPAI GACNNNNGTC 1 cut(s) 93
BstUI CGCG 1 cut(s) 123
BstZI CGGCCG 2 cut(s) 267, 303
Bsu15I ATCGAT 1 cut(s) 14
Bsu36I CCTNAGG 1 cut(s) 52
BsuRI GGCC 6 cut(s) 22, 114, 187, 249, 269, 305
BsuTUI ATCGAT 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 1 cut(s) 250
BtuMI TCGCGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 294
Cfr10I RCCGGY 2 cut(s) 92, 208
ClaI ATCGAT 1 cut(s) 14
CseI GACGC 1 cut(s) 98
CviAII CATG 1 cut(s) 70
CviJI RGCY 9 cut(s) 22, 114, 179, 187, 238, 249, 269, 305, 487
CviKI_1 RGCY 9 cut(s) 22, 114, 179, 187, 238, 249, 269, 305, 487
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 13, 65
DpnII GATC 2 cut(s) 11, 63
EaeI YGGCCR 5 cut(s) 20, 185, 247, 267, 303
EagI CGGCCG 2 cut(s) 267, 303
Ecl136II GAGCTC 1 cut(s) 238
EclXI CGGCCG 2 cut(s) 267, 303
Eco24I GRGCYC 1 cut(s) 240
Eco52I CGGCCG 2 cut(s) 267, 303
Eco53kI GAGCTC 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 1 cut(s) 73
FaiI YATR 3 cut(s) 71, 373, 417
FatI CATG 1 cut(s) 69
FauI CCCGC 1 cut(s) 358
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 240
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 293
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 6 cut(s) 22, 114, 187, 249, 269, 305
HapII CCGG 5 cut(s) 93, 105, 115, 209, 270
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 294
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 3 cut(s) 16, 118, 299
HpaII CCGG 5 cut(s) 93, 105, 115, 209, 270
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 1 cut(s) 389
Hpy188I TCNGA 2 cut(s) 288, 298
Hpy188III TCNNGA 3 cut(s) 122, 400, 441
Hpy8I GTNNAC 1 cut(s) 389
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 5 cut(s) 94, 104, 221, 309, 477
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 255
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 511
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 11, 63
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 6 cut(s) 106, 118, 128, 222, 283, 371
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 4 cut(s) 100, 155, 400, 449
MalI GATC 2 cut(s) 13, 65
MboI GATC 2 cut(s) 11, 63
MboII GAAGA 2 cut(s) 291, 419
MfeI CAATTG 1 cut(s) 434
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 35, 434, 469
MnlI CCTC 6 cut(s) 215, 266, 269, 282, 324, 402
MspI CCGG 5 cut(s) 93, 105, 115, 209, 270
MunI CAATTG 1 cut(s) 434
Mva1269I GAATGC 1 cut(s) 150
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 120, 255
NdeII GATC 2 cut(s) 11, 63
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 525
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 3 cut(s) 100, 400, 449
NruI TCGCGA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PctI GAATGC 1 cut(s) 150
PfeI GAWTC 3 cut(s) 16, 118, 299
Ple19I CGATCG 1 cut(s) 14
Ppu21I YACGTR 1 cut(s) 512
PshAI GACNNNNGTC 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 525
PsrI GAACNNNNNNTAC 2 cut(s) 356, 388
PvuI CGATCG 1 cut(s) 14
RruI TCGCGA 1 cut(s) 123
SacI GAGCTC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 11, 63
SduI GDGCHC 1 cut(s) 240
SetI ASST 8 cut(s) 53, 86, 162, 181, 240, 388, 394, 514
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 3 cut(s) 35, 434, 469
SsiI CCGC 2 cut(s) 31, 351
SspMI CTAG 1 cut(s) 98
SstI GAGCTC 1 cut(s) 240
TaaI ACNGT 1 cut(s) 537
TaiI ACGT 1 cut(s) 514
TaqI TCGA 7 cut(s) 10, 14, 87, 175, 220, 442, 505
TaqII GACCGA 1 cut(s) 419
TasI AATT 3 cut(s) 35, 434, 469
TfiI GAWTC 3 cut(s) 16, 118, 299
TseFI GTSAC 3 cut(s) 100, 400, 449
Tsp45I GTSAC 3 cut(s) 100, 400, 449
TspDTI ATGAA 1 cut(s) 86
XapI RAATTY 1 cut(s) 469
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.