RLG00000001626

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0021486
Physical Location & Seq
Forward (+)
18468454 .. 18470847
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001626

Sequence Viewer

Length: 519 bp
ATGATTGTTGATGATGATGATAGAAAAAGCCACAATTCCGGGTCGGATTGCTCCGAATCAAGCTCCCCCGCCTCCGTTCAAAAGGAGCTTGACTCCCAAGTCCGCGCAGTGATAGTGAAGGCAAGTAGTGGCCCTAGGTATGTGGTTGGCTATCGCAATAAAGTGGACAAAGAAAAACTAACAGCGGGCACTCGGGTTGTTTTGGATATGACTAATTTGACTATCATGAGGGCTCTTCCAAGAGAGGTTGACCCAGTAGTGTATAATGTGCTTCATGAAGATCCAGGTTCAAAGTTTGTTAGTACTGATGGCAGTACAAGCAGCAAGGAAGAAGTGAATTATTTGGGGCAGTTCTATCATCCTAATCTTGTGAAACTAATTAGCTATTGCTTGGAAGACGAGCGCAGTGCCTTTTGGTATATGAATTCATGCCTCGAAGCATGCCTCGAAGCATCCTGGAAAATCATTTGTTCAGTAGAGGTTCTTATTTTCAACCTCTTTCTTGGGCCCTCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

173

Amino Acids

19.14

Weight (kDa)

5.08

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 35 - 80 1.3e-09 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021486)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001626 RLG00000013061 RLG00000022532
rosa_samantha Rh1BG148000 Rh6DG128200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccII CGCG 1 cut(s) 105
AccIII TCCGGA 1 cut(s) 512
AciI CCGC 3 cut(s) 69, 103, 185
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 424
AfaI GTAC 2 cut(s) 304, 316
AgsI TTSAA 3 cut(s) 80, 291, 493
AjnI CCWGG 2 cut(s) 283, 455
AluBI AGCT 3 cut(s) 63, 88, 384
AluI AGCT 3 cut(s) 63, 88, 384
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 512
AoxI GGCC 2 cut(s) 130, 506
ApaI GGGCCC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 424
AspA2I CCTAGG 1 cut(s) 134
AspLEI GCGC 2 cut(s) 107, 405
AspS9I GGNCC 3 cut(s) 131, 506, 507
AsuC2I CCSGG 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 192
AvrII CCTAGG 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 191, 510
BanII GRGCYC 2 cut(s) 235, 510
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 333
BccI CCATC 1 cut(s) 302
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 285, 457
BcnI CCSGG 1 cut(s) 40
BfaI CTAG 1 cut(s) 135
BisI GCNGC 1 cut(s) 322
BlnI CCTAGG 1 cut(s) 134
BlsI GCNGC 1 cut(s) 323
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 3 cut(s) 40, 285, 457
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 3 cut(s) 131, 506, 507
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 3 cut(s) 40, 285, 457
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpuMI CCSGG 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 254
BseAI TCCGGA 1 cut(s) 512
BseBI CCWGG 2 cut(s) 285, 457
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 358, 452
BseNI ACTGG 1 cut(s) 254
BseSI GKGCMC 2 cut(s) 191, 510
BseXI GCAGC 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 132, 508
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 2 cut(s) 39, 513
BsnI GGCC 2 cut(s) 132, 508
BsoBI CYCGRG 1 cut(s) 192
Bsp120I GGGCCC 1 cut(s) 506
Bsp1286I GDGCHC 3 cut(s) 191, 235, 510
Bsp13I TCCGGA 1 cut(s) 512
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 3 cut(s) 69, 103, 185
BspANI GGCC 2 cut(s) 132, 508
BspEI TCCGGA 1 cut(s) 512
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 2 cut(s) 225, 274
BspLI GGNNCC 1 cut(s) 508
BspPI GGATC 1 cut(s) 275
BspQI GCTCTTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 2 cut(s) 285, 457
Bst6I CTCTTC 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 187, 442
BstF5I GGATG 2 cut(s) 358, 452
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 2 cut(s) 107, 405
BstKTI GATC 1 cut(s) 283
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 2 cut(s) 285, 457
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 3 cut(s) 38, 283, 455
BstSLI GKGCMC 2 cut(s) 191, 510
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 2 cut(s) 132, 508
BtsCI GGATG 2 cut(s) 358, 452
BtsI GCAGTG 2 cut(s) 114, 412
BtsIMutI CAGTG 2 cut(s) 114, 412
Cac8I GCNNGC 2 cut(s) 187, 442
CciI TCATGA 2 cut(s) 225, 274
CfoI GCGC 2 cut(s) 107, 405
Cfr13I GGNCC 3 cut(s) 131, 506, 507
Csp6I GTAC 2 cut(s) 303, 315
CviAII CATG 4 cut(s) 226, 275, 429, 441
CviJI RGCY 8 cut(s) 30, 63, 88, 132, 150, 233, 384, 508
CviKI_1 RGCY 8 cut(s) 30, 63, 88, 132, 150, 233, 384, 508
CviQI GTAC 2 cut(s) 303, 315
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 2 cut(s) 235, 510
Eco88I CYCGRG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 283, 455
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 2 cut(s) 235, 510
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 4 cut(s) 229, 278, 432, 444
FaiI YATR 9 cut(s) 141, 209, 227, 264, 276, 420, 422, 430, 442
FatI CATG 4 cut(s) 225, 274, 428, 440
FauI CCCGC 2 cut(s) 76, 178
Fnu4HI GCNGC 1 cut(s) 322
FokI GGATG 2 cut(s) 345, 439
FriOI GRGCYC 2 cut(s) 235, 510
Fsp4HI GCNGC 1 cut(s) 322
FspBI CTAG 1 cut(s) 135
GlaI GCGC 2 cut(s) 106, 404
GluI GCNGC 1 cut(s) 322
HaeIII GGCC 2 cut(s) 132, 508
HapII CCGG 2 cut(s) 39, 513
HhaI GCGC 2 cut(s) 107, 405
Hin1II CATG 4 cut(s) 229, 278, 432, 444
Hin6I GCGC 2 cut(s) 105, 403
HinP1I GCGC 2 cut(s) 105, 403
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 2 cut(s) 56, 92
HpaII CCGG 2 cut(s) 39, 513
Hpy166II GTNNAC 2 cut(s) 166, 250
Hpy188I TCNGA 2 cut(s) 46, 55
Hpy188III TCNNGA 3 cut(s) 226, 275, 513
Hpy8I GTNNAC 2 cut(s) 166, 250
HpyAV CCTTC 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
Hsp92II CATG 4 cut(s) 229, 278, 432, 444
HspAI GCGC 2 cut(s) 105, 403
Kpn2I TCCGGA 1 cut(s) 512
Kzo9I GATC 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 3 cut(s) 56, 68, 85
LpnPI CCDG 6 cut(s) 52, 267, 270, 297, 442, 469
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 1 cut(s) 461
MaeI CTAG 1 cut(s) 135
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 4 cut(s) 227, 290, 341, 407
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 3 cut(s) 191, 235, 510
MluCI AATT 5 cut(s) 34, 214, 337, 378, 424
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 7 cut(s) 82, 222, 238, 443, 455, 472, 506
MroI TCCGGA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 2 cut(s) 39, 513
MspR9I CCNGG 3 cut(s) 40, 285, 457
MvaI CCWGG 2 cut(s) 285, 457
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 40
NdeII GATC 1 cut(s) 280
NlaIII CATG 4 cut(s) 229, 278, 432, 444
NlaIV GGNNCC 1 cut(s) 508
NspI RCATGY 1 cut(s) 444
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 2 cut(s) 225, 274
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 455
PkrI GCNGC 1 cut(s) 323
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 283, 455
PspGI CCWGG 2 cut(s) 283, 455
PspN4I GGNNCC 1 cut(s) 508
PspOMI GGGCCC 1 cut(s) 506
PspPI GGNCC 3 cut(s) 131, 506, 507
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 2 cut(s) 304, 316
RsaNI GTAC 2 cut(s) 303, 315
SapI GCTCTTC 1 cut(s) 240
SatI GCNGC 1 cut(s) 322
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 3 cut(s) 131, 506, 507
ScaI AGTACT 1 cut(s) 304
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 40, 285, 457
SduI GDGCHC 3 cut(s) 191, 235, 510
SetI ASST 8 cut(s) 65, 90, 140, 249, 289, 386, 483, 498
SfaNI GCATC 1 cut(s) 461
SphI GCATGC 1 cut(s) 444
Sse9I AATT 5 cut(s) 34, 214, 337, 378, 424
SsiI CCGC 3 cut(s) 69, 103, 185
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 3 cut(s) 38, 283, 455
StyI CCWWGG 1 cut(s) 134
TaqI TCGA 2 cut(s) 435, 447
TasI AATT 5 cut(s) 34, 214, 337, 378, 424
TatI WGTACW 2 cut(s) 302, 314
TfiI GAWTC 1 cut(s) 56
TscAI CASTG 2 cut(s) 114, 412
TseI GCWGC 1 cut(s) 321
TspDTI ATGAA 4 cut(s) 263, 291, 417, 437
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 2 cut(s) 114, 412
XapI RAATTY 1 cut(s) 424
XceI RCATGY 1 cut(s) 444
XmaJI CCTAGG 1 cut(s) 134
XspI CTAG 1 cut(s) 135
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.