RLG00000022532

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0021486
Physical Location & Seq
Reverse (-)
2934631 .. 2936432
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022532

Sequence Viewer

Length: 624 bp
ATGCAGCAGCTCTCAAATATCTTCTTCTCCCAAGAACCTCCAGAGCCCAGACCCTTCACCGCCATCACAGATTACCGCAAGAGGTTACTCCAGCACAAGGAGCTCGACTCCCGAGTTCGTGCAATGATAGTGAAGGCAAGTAGTGGCCCTAGGTATGTGGTTGGCTGTCGCAATAAAGTGGACAAAGAAAAACTCACAGCGGGCACTCGGGTTGTTTTGGATATGACTAATCTGACTATCATGAGGGCTCTTCCAAGAGAGGTTGACCCAGTAGTGTATAATATGCTTCATGAAGATCCAGGTAATGTTAGCTACTCTGCTGTGGGAGGATTGGCTGGGTCAGAACTGGCACTTACAAGTGAGGTTCAAAGTTTGTTAGTACTGATGGCAGTACAAGCAGCAAGTCTCATCATTTTCAGCACCTCCAACTCCTCAGACAGAGGTGTGTTAGGAGAATGCGGCTTTGGTTCTGTTTTTAAAGGGTGGATTGATGAAAATTCATTTACAGCTTCAAAGCCTGGGATTGGCATAGTTTTGGCTGTGAAACGGCTTAACCAAGAAAGTTTTCAGGGTCATAGGGTGGTTGGCAGAAGTGAATTATTTGGGGCAGTACTATCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

208

Amino Acids

22.57

Weight (kDa)

8.95

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 43 - 85 3.6e-09 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021486)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001626 RLG00000013061 RLG00000022532
rosa_samantha Rh1BG148000 Rh6DG128200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 60, 76, 200, 459
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 496
AfaI GTAC 3 cut(s) 381, 393, 612
AfiI CCNNNNNNNGG 2 cut(s) 97, 524
AgsI TTSAA 2 cut(s) 368, 513
AjnI CCWGG 2 cut(s) 298, 517
AjuI GAANNNNNNNTTGG 4 cut(s) 447, 479, 549, 581
AluBI AGCT 4 cut(s) 10, 103, 312, 509
AluI AGCT 4 cut(s) 10, 103, 312, 509
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 2 cut(s) 111, 207
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 4, 7, 398
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 564
AspA2I CCTAGG 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 2 cut(s) 111, 207
AvrII CCTAGG 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 206
BanII GRGCYC 3 cut(s) 48, 105, 250
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 16, 19, 410
BccI CCATC 2 cut(s) 71, 379
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 2 cut(s) 300, 519
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 150
BisI GCNGC 4 cut(s) 5, 8, 399, 460
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 4 cut(s) 6, 9, 400, 461
BmcAI AGTACT 2 cut(s) 381, 612
Bme1390I CCNGG 2 cut(s) 300, 519
BmeT110I CYCGRG 2 cut(s) 111, 207
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 2 cut(s) 300, 519
BmrI ACTGGG 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 263
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 2 cut(s) 24, 74
BsaJI CCNNGG 2 cut(s) 149, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 524
Bse1I ACTGG 2 cut(s) 269, 351
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 300, 519
BseDI CCNNGG 2 cut(s) 149, 518
BseGI GGATG 1 cut(s) 617
BseLI CCNNNNNNNGG 2 cut(s) 97, 524
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 269, 351
BseRI GAGGAG 1 cut(s) 421
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 3 cut(s) 16, 19, 410
BseYI CCCAGC 1 cut(s) 335
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 2 cut(s) 111, 207
BslI CCNNNNNNNGG 2 cut(s) 97, 524
BsmAI GTCTC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 2 cut(s) 111, 207
Bsp1286I GDGCHC 4 cut(s) 48, 105, 206, 250
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 4 cut(s) 60, 76, 200, 459
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 446
BspHI TCATGA 2 cut(s) 240, 289
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 2 cut(s) 269, 351
BssECI CCNNGG 2 cut(s) 149, 518
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 300, 519
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 617
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 100, 395
BstNI CCWGG 2 cut(s) 300, 519
BstSCI CCNGG 2 cut(s) 298, 517
BstSLI GKGCMC 1 cut(s) 206
BstV1I GCAGC 3 cut(s) 16, 19, 410
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 617
Cac8I GCNNGC 1 cut(s) 202
CciI TCATGA 2 cut(s) 240, 289
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 380, 392, 611
CviAII CATG 2 cut(s) 241, 290
CviQI GTAC 3 cut(s) 380, 392, 611
DdeI CTNAG 1 cut(s) 433
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DraI TTTAAA 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 3 cut(s) 48, 105, 250
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 2 cut(s) 111, 207
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 298, 517
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 3 cut(s) 48, 105, 250
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 244, 293
FaiI YATR 8 cut(s) 156, 224, 242, 279, 284, 291, 530, 576
FatI CATG 2 cut(s) 240, 289
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 5, 8, 399, 460
FokI GGATG 1 cut(s) 604
FriOI GRGCYC 3 cut(s) 48, 105, 250
Fsp4HI GCNGC 4 cut(s) 5, 8, 399, 460
FspBI CTAG 1 cut(s) 150
GluI GCNGC 4 cut(s) 5, 8, 399, 460
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 2 cut(s) 24, 74
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 2 cut(s) 244, 293
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 107
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 181, 265
Hpy188I TCNGA 3 cut(s) 234, 343, 436
Hpy188III TCNNGA 4 cut(s) 41, 111, 241, 290
Hpy8I GTNNAC 2 cut(s) 181, 265
HpyAV CCTTC 2 cut(s) 64, 127
HpyCH4V TGCA 2 cut(s) 4, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 395
HpyF3I CTNAG 1 cut(s) 433
Hsp92II CATG 2 cut(s) 244, 293
Kzo9I GATC 1 cut(s) 295
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 3 cut(s) 16, 19, 410
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 4 cut(s) 13, 16, 242, 305
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 4 cut(s) 48, 105, 206, 250
MluCI AATT 2 cut(s) 496, 596
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 9 cut(s) 48, 75, 237, 253, 320, 355, 433, 434, 442
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 2 cut(s) 477, 552
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 300, 519
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 2 cut(s) 300, 519
MwoI GCNNNNNNNGC 2 cut(s) 100, 395
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 244, 293
PagI TCATGA 2 cut(s) 240, 289
PciSI GCTCTTC 1 cut(s) 255
PctI GAATGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 564
PkrI GCNGC 4 cut(s) 6, 9, 400, 461
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 298, 517
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 298, 517
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 3 cut(s) 381, 393, 612
RsaNI GTAC 3 cut(s) 380, 392, 611
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 477, 552
SatI GCNGC 4 cut(s) 5, 8, 399, 460
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 2 cut(s) 381, 612
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 300, 519
SduI GDGCHC 4 cut(s) 48, 105, 206, 250
Sse9I AATT 2 cut(s) 496, 596
SsiI CCGC 4 cut(s) 60, 76, 200, 459
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 298, 517
StyI CCWWGG 1 cut(s) 149
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 496, 596
TatI WGTACW 3 cut(s) 379, 391, 610
TauI GCSGC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 477, 552
Tru9I TTAA 2 cut(s) 477, 552
TseI GCWGC 3 cut(s) 4, 7, 398
TspDTI ATGAA 4 cut(s) 278, 306, 489, 507
XapI RAATTY 1 cut(s) 496
XmaJI CCTAGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 1 cut(s) 150
ZrmI AGTACT 2 cut(s) 381, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.