Rh6DG128200

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0021486
Physical Location & Seq
Reverse (-)
18084646 .. 18085741
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG128200.1

Sequence Viewer

Length: 603 bp
ATGTTTGATTTTATTGCTTCAGTGATAGTGAAGGCGAGTAGTGGCCCTAGGTATGTGGTTGGCTGTCGCAGTAAAGTGGACAAAGAAAAACTGACAGCGGGCACTCGGGTTGTTTTGGATATGACTACTCTGACTATCATGAGGGCTCTTCCAAGAGAGGTTGATCCAGTAGTGTATAATATGCTTCATGAAGATCCCGGTAATGTTAGCTACTCCGCTGTGGGAGGGCTAGGAGACCAGATCCGGGAGCTTAGGGAATCTATAGAGCTGCCTCTAATGAACCCTGAGCTCTTCCTTAGAGTGGGCATCAAACCACCCAAGGTTGTATCAAGCGCCATTATCGATAAGTACATTGGTGAAAGTGCAAGATTGATAAGGGAAATGTTTGGTTATGCTCGTGATCACCAGCCCTGTATCATTTTTATGGATGAGATCGATGCCATCGGTGGACGGCGTTTTAGCGAAGGGACCAGTGCAGACCGTGAAATCCAGCGAACACTCATGGAGTTGCTTAACCAGTTAGATGGATTTGATCAACTTGGGAAGGTACTTGAGTTCTCATTGATCTTGTTGGTTATTCAGATTAAATGGATGCAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

200

Amino Acids

22.48

Weight (kDa)

5.52

Isoelectric Point (pI)

25.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 8 - 51 4.6e-11 Proteasomal ATPase OB C-terminal domain
AAA PF00004 107 - 180 4.5e-16 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021486)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001626 RLG00000013061 RLG00000022532
rosa_samantha Rh1BG148000 Rh6DG128200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 98, 216
AclWI GGATC 3 cut(s) 158, 188, 235
AfaI GTAC 2 cut(s) 350, 549
AfiI CCNNNNNNNGG 2 cut(s) 244, 301
AluBI AGCT 4 cut(s) 210, 250, 268, 289
AluI AGCT 4 cut(s) 210, 250, 268, 289
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 3 cut(s) 158, 188, 235
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 268
AspA2I CCTAGG 1 cut(s) 47
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 44, 468
AsuC2I CCSGG 2 cut(s) 198, 245
AsuHPI GGTGA 2 cut(s) 368, 395
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 1 cut(s) 468
AvrII CCTAGG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 104
BaeI ACNNNNGTAYC 2 cut(s) 539, 572
BanII GRGCYC 2 cut(s) 148, 291
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 449, 518
BceAI ACGGC 1 cut(s) 467
BclI TGATCA 2 cut(s) 400, 532
BcnI CCSGG 2 cut(s) 198, 245
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 2 cut(s) 48, 230
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 336
BisI GCNGC 1 cut(s) 269
BlnI CCTAGG 1 cut(s) 47
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 2 cut(s) 198, 245
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 44, 468
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 2 cut(s) 198, 245
BmsI GCATC 3 cut(s) 315, 427, 582
Bpu10I CCTNAGC 2 cut(s) 251, 285
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 2 cut(s) 198, 245
Bsa29I ATCGAT 2 cut(s) 342, 435
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 47, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 301
Bse1I ACTGG 3 cut(s) 167, 471, 517
BseCI ATCGAT 2 cut(s) 342, 435
BseDI CCNNGG 2 cut(s) 47, 318
BseGI GGATG 2 cut(s) 433, 597
BseLI CCNNNNNNNGG 2 cut(s) 244, 301
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 167, 471, 517
BseSI GKGCMC 1 cut(s) 104
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 1 cut(s) 45
BshVI ATCGAT 2 cut(s) 342, 435
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 2 cut(s) 198, 244
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 244, 301
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 105
Bsp1286I GDGCHC 3 cut(s) 104, 148, 291
Bsp143I GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
BspACI CCGC 2 cut(s) 98, 216
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 2 cut(s) 342, 435
BspHI TCATGA 2 cut(s) 138, 187
BspLI GGNNCC 1 cut(s) 469
BspPI GGATC 3 cut(s) 158, 188, 235
BspQI GCTCTTC 2 cut(s) 153, 296
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 3 cut(s) 167, 471, 517
BssECI CCNNGG 2 cut(s) 47, 318
BssMI GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 47, 318
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 2 cut(s) 153, 296
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 3 cut(s) 251, 285, 296
BstF5I GGATG 2 cut(s) 433, 597
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 7 cut(s) 166, 196, 243, 403, 435, 535, 567
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
BstSCI CCNGG 2 cut(s) 196, 243
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 193, 240
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 2 cut(s) 193, 240
Bsu15I ATCGAT 2 cut(s) 342, 435
BsuRI GGCC 1 cut(s) 45
BsuTUI ATCGAT 2 cut(s) 342, 435
BtsCI GGATG 2 cut(s) 433, 597
BtsIMutI CAGTG 2 cut(s) 27, 478
Cac8I GCNNGC 1 cut(s) 100
CciI TCATGA 2 cut(s) 138, 187
CfoI GCGC 1 cut(s) 335
Cfr13I GGNCC 2 cut(s) 44, 468
ClaI ATCGAT 2 cut(s) 342, 435
Csp6I GTAC 2 cut(s) 349, 548
CviAII CATG 3 cut(s) 139, 188, 502
CviJI RGCY 9 cut(s) 45, 63, 146, 210, 229, 250, 268, 289, 409
CviKI_1 RGCY 9 cut(s) 45, 63, 146, 210, 229, 250, 268, 289, 409
CviQI GTAC 2 cut(s) 349, 548
DdeI CTNAG 3 cut(s) 251, 285, 296
DpnI GATC 7 cut(s) 165, 195, 242, 402, 434, 534, 566
DpnII GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
Eam1104I CTCTTC 2 cut(s) 153, 296
EarI CTCTTC 2 cut(s) 153, 296
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 47, 318
Eco24I GRGCYC 2 cut(s) 148, 291
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 468
Eco53kI GAGCTC 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 47, 318
EcoT38I GRGCYC 2 cut(s) 148, 291
ErhI CCWWGG 2 cut(s) 47, 318
FaeI CATG 3 cut(s) 142, 191, 505
FaqI GGGAC 1 cut(s) 481
FatI CATG 3 cut(s) 138, 187, 501
FauI CCCGC 1 cut(s) 91
FbaI TGATCA 2 cut(s) 400, 532
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 440
FriOI GRGCYC 2 cut(s) 148, 291
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 2 cut(s) 48, 230
GlaI GCGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 336
HaeIII GGCC 1 cut(s) 45
HapII CCGG 2 cut(s) 198, 244
HhaI GCGC 1 cut(s) 335
Hin1II CATG 3 cut(s) 142, 191, 505
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 198, 244
HphI GGTGA 2 cut(s) 368, 395
Hpy166II GTNNAC 2 cut(s) 79, 449
Hpy188I TCNGA 2 cut(s) 132, 582
Hpy188III TCNNGA 3 cut(s) 139, 188, 398
Hpy8I GTNNAC 2 cut(s) 79, 449
HpyAV CCTTC 3 cut(s) 25, 458, 538
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 3 cut(s) 365, 476, 595
HpyF3I CTNAG 3 cut(s) 251, 285, 296
Hsp92II CATG 3 cut(s) 142, 191, 505
HspAI GCGC 1 cut(s) 333
Ksp22I TGATCA 2 cut(s) 400, 532
Kzo9I GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
LguI GCTCTTC 2 cut(s) 153, 296
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 3 cut(s) 315, 427, 582
MaeI CTAG 2 cut(s) 48, 230
MalI GATC 7 cut(s) 165, 195, 242, 402, 434, 534, 566
MboI GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
MboII GAAGA 3 cut(s) 140, 203, 283
MflI RGATCY 2 cut(s) 193, 240
MhlI GDGCHC 3 cut(s) 104, 148, 291
MnlI CCTC 4 cut(s) 135, 151, 218, 282
MseI TTAA 3 cut(s) 513, 585, 601
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 2 cut(s) 98, 218
MspI CCGG 2 cut(s) 198, 244
MspR9I CCNGG 2 cut(s) 198, 245
NciI CCSGG 2 cut(s) 198, 245
NdeII GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
NlaIII CATG 3 cut(s) 142, 191, 505
NlaIV GGNNCC 1 cut(s) 469
PagI TCATGA 2 cut(s) 138, 187
PciSI GCTCTTC 2 cut(s) 153, 296
PfeI GAWTC 1 cut(s) 257
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 2 cut(s) 44, 468
PsuI RGATCY 2 cut(s) 193, 240
RsaI GTAC 2 cut(s) 350, 549
RsaNI GTAC 2 cut(s) 349, 548
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 291
SapI GCTCTTC 2 cut(s) 153, 296
SaqAI TTAA 3 cut(s) 513, 585, 601
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 7 cut(s) 163, 193, 240, 400, 432, 532, 564
Sau96I GGNCC 2 cut(s) 44, 468
ScrFI CCNGG 2 cut(s) 198, 245
SduI GDGCHC 3 cut(s) 104, 148, 291
SetI ASST 8 cut(s) 53, 162, 212, 252, 270, 291, 324, 549
SfaNI GCATC 3 cut(s) 315, 427, 582
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SsiI CCGC 2 cut(s) 98, 216
SspMI CTAG 2 cut(s) 48, 230
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 196, 243
StyI CCWWGG 2 cut(s) 47, 318
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 2 cut(s) 342, 435
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 513, 585, 601
Tru9I TTAA 3 cut(s) 513, 585, 601
TscAI CASTG 2 cut(s) 27, 478
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 176, 204, 293
TspRI CASTG 2 cut(s) 27, 478
VpaK11BI GGWCC 1 cut(s) 468
XmaJI CCTAGG 1 cut(s) 47
XspI CTAG 2 cut(s) 48, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.