Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0021486

Physical Location & Seq

Genomic Coordinates Forward (+)

24280526 .. 24281678

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG148000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCTATTACAATACATGATGATACTGAACATAGAATTTGAATATAATATCTGTGAGGGGATGTTTATTTTTGATTATGCTGTGATACCATATCCTTTGCCGCTTAACTCTTGTAACCGTTTAAAGTTTGTCAGTACTGATGGTAGTACAAGCAGCAAGGTCTCATCAATTTCAGCACCTCCAACTCCTCAGACAGAGGGTGAGATCTTGCAGTCATCCAATTTGAGGAGCTTCAGTTTCTCTGACCTCAGATTGGCCATCAGGAATTTCCGTCCTGATAGTGTGTTAGGAGAATGCGGCTTTGGTTCTGTTTTTAAAGGGTGGATTGATGAAAATTCATTTACAGCTGCAAAGCCTGGGATTGGCATAGTTTTGGCTGTGAAACGGCTTAACCAAGAAAGTTTTCAGGGTCATAGGGAGTGGTTGGCAGAAGTGAATTATTTGGGGCAGTTCTATCATCCTAATCTTGTGAAACTAATTGGCTATTGCTTGGAAGATGAGCGCAGCGCCTTTTGGTATATGAATTCATGCCTCGAGGCAGCCTGGAAAATCATTTGTTCAATAGAGGTTCTTATTTTCAACCTCTTTCTTGGACCCTCCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

201

Amino Acids

22.71

Weight (kDa)

5.07

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	94 - 168	1.2e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021486)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001626 RLG00000013061 RLG00000022532
rosa_samantha	Rh1BG148000 Rh6DG128200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	533
AccIII	TCCGGA	1 cut(s)	599
AciI	CCGC	2 cut(s)	101, 297
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	4 cut(s)	35, 265, 334, 523
AcuI	CTGAAG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	136, 148
AfiI	CCNNNNNNNGG	3 cut(s)	225, 253, 362
AgsI	TTSAA	3 cut(s)	41, 561, 580
AjnI	CCWGG	2 cut(s)	355, 542
AjuI	GAANNNNNNNTTGG	4 cut(s)	285, 317, 387, 419
AluBI	AGCT	2 cut(s)	231, 347
AluI	AGCT	2 cut(s)	231, 347
Alw26I	GTCTC	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	599
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	4 cut(s)	153, 347, 504, 539
ApoI	RAATTY	4 cut(s)	35, 265, 334, 523
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	504, 509
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	593
BalI	TGGCCA	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	165, 334, 516, 551
BccI	CCATC	2 cut(s)	134, 266
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	357, 544
BcoDI	GTCTC	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	510
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	6 cut(s)	101, 154, 298, 348, 505, 540
BlsI	GCNGC	6 cut(s)	102, 155, 299, 349, 506, 541
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	357, 544
Bme18I	GGWCC	1 cut(s)	593
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	2 cut(s)	357, 544
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	356
BsaWI	WCCGGW	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 253, 362
BseAI	TCCGGA	1 cut(s)	599
BseBI	CCWGG	2 cut(s)	357, 544
BseDI	CCNNGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	66, 215, 457
BseLI	CCNNNNNNNGG	3 cut(s)	225, 253, 362
BseMII	CTCAG	2 cut(s)	203, 262
BseRI	GAGGAG	2 cut(s)	177, 241
BseXI	GCAGC	4 cut(s)	165, 334, 516, 551
BshFI	GGCC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	600
BslI	CCNNNNNNNGG	3 cut(s)	225, 253, 362
BsmAI	GTCTC	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	599
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	101, 297
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	202, 261
BspEI	TCCGGA	1 cut(s)	599
BspLI	GGNNCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	356
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	357, 544
Bst4CI	ACNGT	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	189, 248
BstF5I	GGATG	3 cut(s)	66, 215, 457
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	2 cut(s)	504, 509
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	204
BstNI	CCWGG	2 cut(s)	357, 544
BstSCI	CCNGG	2 cut(s)	355, 542
BstV1I	GCAGC	4 cut(s)	165, 334, 516, 551
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	66, 215, 457
CfoI	GCGC	2 cut(s)	504, 509
Cfr13I	GGNCC	1 cut(s)	593
Csp6I	GTAC	2 cut(s)	135, 147
CviAII	CATG	2 cut(s)	16, 528
CviJI	RGCY	9 cut(s)	231, 257, 300, 347, 355, 377, 388, 483, 542
CviKI_1	RGCY	9 cut(s)	231, 257, 300, 347, 355, 377, 388, 483, 542
CviQI	GTAC	2 cut(s)	135, 147
DdeI	CTNAG	2 cut(s)	189, 248
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraI	TTTAAA	2 cut(s)	123, 316
EaeI	YGGCCR	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	355, 542
FaeI	CATG	2 cut(s)	19, 531
FatI	CATG	2 cut(s)	15, 527
Fnu4HI	GCNGC	6 cut(s)	101, 154, 298, 348, 505, 540
FokI	GGATG	3 cut(s)	73, 202, 444
Fsp4HI	GCNGC	6 cut(s)	101, 154, 298, 348, 505, 540
GlaI	GCGC	2 cut(s)	503, 508
GluI	GCNGC	6 cut(s)	101, 154, 298, 348, 505, 540
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	600
HhaI	GCGC	2 cut(s)	504, 509
Hin1II	CATG	2 cut(s)	19, 531
Hin6I	GCGC	2 cut(s)	502, 507
HinP1I	GCGC	2 cut(s)	502, 507
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	192, 244, 251
Hpy188III	TCNNGA	3 cut(s)	262, 275, 600
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	211, 350
HpyF3I	CTNAG	2 cut(s)	189, 248
Hsp92II	CATG	2 cut(s)	19, 531
HspAI	GCGC	2 cut(s)	502, 507
Kpn2I	TCCGGA	1 cut(s)	599
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	7 cut(s)	247, 288, 342, 369, 392, 529, 556
Lsp1109I	GCAGC	4 cut(s)	165, 334, 516, 551
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	506
MflI	RGATCY	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	8 cut(s)	35, 168, 220, 265, 334, 436, 477, 523
MluNI	TGGCCA	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	206
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	599
MroXI	GAANNNNTTC	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	4 cut(s)	105, 122, 315, 390
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	2 cut(s)	357, 544
MteI	GCGCNGCGC	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	2 cut(s)	357, 544
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	19, 531
NlaIV	GGNNCC	1 cut(s)	595
PaeR7I	CTCGAG	1 cut(s)	533
PctI	GAATGC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	402
PkrI	GCNGC	6 cut(s)	102, 155, 299, 349, 506, 541
Psp6I	CCWGG	2 cut(s)	355, 542
PspGI	CCWGG	2 cut(s)	355, 542
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	593
PspXI	VCTCGAGB	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	136, 148
RsaNI	GTAC	2 cut(s)	135, 147
SaqAI	TTAA	4 cut(s)	105, 122, 315, 390
SatI	GCNGC	6 cut(s)	101, 154, 298, 348, 505, 540
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	593
ScaI	AGTACT	1 cut(s)	136
ScrFI	CCNGG	2 cut(s)	357, 544
SetI	ASST	7 cut(s)	162, 181, 233, 249, 349, 570, 585
Sfr274I	CTCGAG	1 cut(s)	533
SinI	GGWCC	1 cut(s)	593
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	8 cut(s)	35, 168, 220, 265, 334, 436, 477, 523
SsiI	CCGC	2 cut(s)	101, 297
StyD4I	CCNGG	2 cut(s)	355, 542
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	534
TasI	AATT	8 cut(s)	35, 168, 220, 265, 334, 436, 477, 523
TatI	WGTACW	2 cut(s)	134, 146
TauI	GCSGC	2 cut(s)	103, 300
Tru1I	TTAA	4 cut(s)	105, 122, 315, 390
Tru9I	TTAA	4 cut(s)	105, 122, 315, 390
TseI	GCWGC	4 cut(s)	153, 347, 504, 539
TspDTI	ATGAA	4 cut(s)	327, 345, 516, 536
TspGWI	ACGGA	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	593
XapI	RAATTY	4 cut(s)	35, 265, 334, 523
XhoI	CTCGAG	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.