RLG00000013061

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0021486
Physical Location & Seq
Reverse (-)
25444971 .. 25446771
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013061

Sequence Viewer

Length: 624 bp
ATGCAGCAGCTCTCAAATATCTTCTTCTCCCAAGAACCTCCAGAGCCCAGACCCTTCACCGCCATCACAGATTACCGCAAGAGGTTACTCCAGCACAAGGAGCTAGACTCCCGAGTTCGCGCAGTGATAGTGAAGGCAAGTAGTGGCCCTAGGTATGTGGTTGGCTGTCGCAATAAAGTGGACAAAGAAAAACTCACAGCGGACACTCGGGTTGTTTTGGATATGACTAATCTGACTATCATGAGGGCTCTTCCAAGAGAGGTTGACCCAGTAGTGTATAATATGCTTCATGAAGATCCAGGTAATGTTAGCTACTCTGCTGTGGGAGGATTGGCTGGGTCAGAACTGGCACTTACAAGTGAGGTTCAAAGTTTGTTAGTACTGATGGCAGTACAAGCAGCAAGTCTCATCATTTTCAGCACCTCCAACTCCTCAGACAGAGGTGTGTTAGGAGAATGCGGCTTTGGTTCTGTTTTTAAAGGGTGGATTGATGAAAATTCATTTACAGCTGCAAAGCCTGGGATTGGCATAGTTTTGGCTGTGAAACGGCTTAACCAAGAAAGTTTTCAGGGTCATAGGGTGGTTGGCAGAAGTGAATTATTTGGGGCAGTTCTATCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

208

Amino Acids

22.58

Weight (kDa)

8.58

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 42 - 85 1.3e-08 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021486)

Species Orthologous Gene IDs
rosa_laevigata RLG00000001626 RLG00000013061 RLG00000022532
rosa_samantha Rh1BG148000 Rh6DG128200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 4 cut(s) 60, 76, 200, 459
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 496
AfaI GTAC 2 cut(s) 381, 393
AfiI CCNNNNNNNGG 2 cut(s) 97, 524
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 2 cut(s) 298, 517
AjuI GAANNNNNNNTTGG 4 cut(s) 447, 479, 549, 581
AluBI AGCT 4 cut(s) 10, 103, 312, 509
AluI AGCT 4 cut(s) 10, 103, 312, 509
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 2 cut(s) 111, 207
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 4 cut(s) 4, 7, 398, 509
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 564
AspA2I CCTAGG 1 cut(s) 149
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 2 cut(s) 111, 207
AvrII CCTAGG 1 cut(s) 149
BanII GRGCYC 2 cut(s) 48, 250
BbvI GCAGC 4 cut(s) 16, 19, 410, 496
BccI CCATC 2 cut(s) 71, 379
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 2 cut(s) 300, 519
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 2 cut(s) 104, 150
BisI GCNGC 5 cut(s) 5, 8, 399, 460, 510
BlnI CCTAGG 1 cut(s) 149
BlsI GCNGC 5 cut(s) 6, 9, 400, 461, 511
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 300, 519
BmeT110I CYCGRG 2 cut(s) 111, 207
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 2 cut(s) 300, 519
BmrI ACTGGG 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 263
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 2 cut(s) 24, 74
BsaJI CCNNGG 2 cut(s) 149, 518
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 524
Bse1I ACTGG 2 cut(s) 269, 351
BseBI CCWGG 2 cut(s) 300, 519
BseDI CCNNGG 2 cut(s) 149, 518
BseGI GGATG 1 cut(s) 617
BseLI CCNNNNNNNGG 2 cut(s) 97, 524
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 269, 351
BseRI GAGGAG 1 cut(s) 421
BseXI GCAGC 4 cut(s) 16, 19, 410, 496
BseYI CCCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 147
BsiHKCI CYCGRG 2 cut(s) 111, 207
BslI CCNNNNNNNGG 2 cut(s) 97, 524
BsmAI GTCTC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 2 cut(s) 111, 207
Bsp1286I GDGCHC 2 cut(s) 48, 250
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 4 cut(s) 60, 76, 200, 459
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 446
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 2 cut(s) 240, 289
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 1 cut(s) 255
BsrI ACTGG 2 cut(s) 269, 351
BssECI CCNNGG 2 cut(s) 149, 518
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 300, 519
Bst6I CTCTTC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 617
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 100, 395
BstNI CCWGG 2 cut(s) 300, 519
BstSCI CCNGG 2 cut(s) 298, 517
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 16, 19, 410, 496
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 617
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
CciI TCATGA 2 cut(s) 240, 289
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 2 cut(s) 380, 392
CviAII CATG 2 cut(s) 241, 290
CviQI GTAC 2 cut(s) 380, 392
DdeI CTNAG 1 cut(s) 433
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DraI TTTAAA 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 48, 250
Eco88I CYCGRG 2 cut(s) 111, 207
EcoRII CCWGG 2 cut(s) 298, 517
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 2 cut(s) 48, 250
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 244, 293
FaiI YATR 8 cut(s) 156, 224, 242, 279, 284, 291, 530, 576
FatI CATG 2 cut(s) 240, 289
Fnu4HI GCNGC 5 cut(s) 5, 8, 399, 460, 510
FokI GGATG 1 cut(s) 604
FriOI GRGCYC 2 cut(s) 48, 250
Fsp4HI GCNGC 5 cut(s) 5, 8, 399, 460, 510
FspBI CTAG 2 cut(s) 104, 150
GlaI GCGC 1 cut(s) 121
GluI GCNGC 5 cut(s) 5, 8, 399, 460, 510
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 2 cut(s) 24, 74
HaeIII GGCC 1 cut(s) 147
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 244, 293
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 107
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 181, 265
Hpy188I TCNGA 3 cut(s) 234, 343, 436
Hpy188III TCNNGA 4 cut(s) 41, 111, 241, 290
Hpy8I GTNNAC 2 cut(s) 181, 265
HpyAV CCTTC 2 cut(s) 64, 127
HpyCH4V TGCA 2 cut(s) 4, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 395
HpyF3I CTNAG 1 cut(s) 433
Hsp92II CATG 2 cut(s) 244, 293
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 295
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 4 cut(s) 16, 19, 410, 496
MaeI CTAG 2 cut(s) 104, 150
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 4 cut(s) 13, 16, 242, 305
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 2 cut(s) 48, 250
MluCI AATT 2 cut(s) 496, 596
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 9 cut(s) 48, 75, 237, 253, 320, 355, 433, 434, 442
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 2 cut(s) 477, 552
MspA1I CMGCKG 2 cut(s) 200, 509
MspR9I CCNGG 2 cut(s) 300, 519
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 2 cut(s) 300, 519
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 100, 395
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 244, 293
PagI TCATGA 2 cut(s) 240, 289
PciSI GCTCTTC 1 cut(s) 255
PctI GAATGC 1 cut(s) 461
PdmI GAANNNNTTC 1 cut(s) 564
PkrI GCNGC 5 cut(s) 6, 9, 400, 461, 511
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 298, 517
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 298, 517
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 381, 393
RsaNI GTAC 2 cut(s) 380, 392
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 477, 552
SatI GCNGC 5 cut(s) 5, 8, 399, 460, 510
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 381
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 300, 519
SduI GDGCHC 2 cut(s) 48, 250
Sse9I AATT 2 cut(s) 496, 596
SsiI CCGC 4 cut(s) 60, 76, 200, 459
SspMI CTAG 2 cut(s) 104, 150
StyD4I CCNGG 2 cut(s) 298, 517
StyI CCWWGG 1 cut(s) 149
TasI AATT 2 cut(s) 496, 596
TatI WGTACW 2 cut(s) 379, 391
TauI GCSGC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 477, 552
Tru9I TTAA 2 cut(s) 477, 552
TscAI CASTG 1 cut(s) 129
TseI GCWGC 4 cut(s) 4, 7, 398, 509
TspDTI ATGAA 4 cut(s) 278, 306, 489, 507
TspRI CASTG 1 cut(s) 129
XapI RAATTY 1 cut(s) 496
XmaJI CCTAGG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 2 cut(s) 104, 150
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.