RLG00000002895

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019321
Physical Location & Seq
Reverse (-)
41416001 .. 41416455
455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002895

Sequence Viewer

Length: 336 bp
ATGAGGGCCTCAGCCACAGCGTTATTACTTGCCTTGTCGATCTTGATTTTTGTTTCATCCTCCTCCTCCATTCCGATCCATTCGTCGTCAGCAGCAGCCATGGAAGTAGGTTCTGCAGGTAATGAAGAAAATCGAGCCACGATGAAAGAATTGCATGGGAATACATGGCAAGGGAAGAAGACATGGATGAATCATGGAAGTTTTCGTAGTCCCCGGAAACACCTTGTCAAGTACCCAACAGAGCTTCCATTTCAAGCTCAAGAGTTGACTAGGGTTGACGAAGATCTATCTCAGCTTGTATGGCTAGCTAACCATGAATATGCAGCAACACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.27

Weight (kDa)

6.97

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019321)

Species Orthologous Gene IDs
pyrus_communis pycom06g02010
rosa_chinensis RchiOBHm_Chr7g0212371
rosa_laevigata RLG00000002895
rosa_roxburghii Rroxscaffold_3G00246890
rosa_rugosa Rorug07G0133400
rosa_samantha Rh2BG243700 Rh5DG381900 Rh7AG266200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 70
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 1 cut(s) 254
AluBI AGCT 4 cut(s) 244, 257, 295, 308
AluI AGCT 4 cut(s) 244, 257, 295, 308
AlwI GGATC 1 cut(s) 70
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 92, 95, 323
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 214
AsuNHI GCTAGC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 104, 107
BcnI CCSGG 1 cut(s) 214
BfaI CTAG 2 cut(s) 270, 305
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 107
BglII AGATCT 1 cut(s) 283
BisI GCNGC 3 cut(s) 93, 96, 324
BlsI GCNGC 3 cut(s) 94, 97, 325
Bme1390I CCNGG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 214
BmtI GCTAGC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 99, 212
BseDI CCNNGG 2 cut(s) 99, 212
BseGI GGATG 2 cut(s) 56, 192
BseMII CTCAG 2 cut(s) 24, 305
BseRI GAGGAG 2 cut(s) 52, 55
BseXI GCAGC 2 cut(s) 104, 107
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 214
BslFI GGGAC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 195
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 39, 75, 283
Bsp19I CCATGG 1 cut(s) 99
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 23, 304
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 107
BspOI GCTAGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 99, 212
BssMI GATC 3 cut(s) 39, 75, 283
BssT1I CCWWGG 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 10, 291
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 56, 192
BstKTI GATC 3 cut(s) 42, 78, 286
BstMBI GATC 3 cut(s) 39, 75, 283
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 104, 107
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 56, 192
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 232
CviAII CATG 6 cut(s) 100, 155, 165, 183, 194, 314
CviJI RGCY 9 cut(s) 8, 14, 98, 137, 244, 257, 295, 304, 308
CviKI_1 RGCY 9 cut(s) 8, 14, 98, 137, 244, 257, 295, 304, 308
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 10, 291
DpnI GATC 3 cut(s) 41, 77, 285
DpnII GATC 3 cut(s) 39, 75, 283
Eco130I CCWWGG 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 6 cut(s) 103, 158, 168, 186, 197, 317
FaiI YATR 9 cut(s) 101, 156, 166, 184, 195, 301, 315, 321, 334
FaqI GGGAC 1 cut(s) 195
FatI CATG 6 cut(s) 99, 154, 164, 182, 193, 313
Fnu4HI GCNGC 3 cut(s) 93, 96, 324
FokI GGATG 2 cut(s) 43, 199
Fsp4HI GCNGC 3 cut(s) 93, 96, 324
FspBI CTAG 2 cut(s) 270, 305
GluI GCNGC 3 cut(s) 93, 96, 324
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 214
Hin1II CATG 6 cut(s) 103, 158, 168, 186, 197, 317
HincII GTYRAC 2 cut(s) 267, 277
HindII GTYRAC 2 cut(s) 267, 277
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 267, 277
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 43, 260
Hpy8I GTNNAC 2 cut(s) 267, 277
Hpy99I CGWCG 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 116, 154, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 2 cut(s) 10, 291
Hsp92II CATG 6 cut(s) 103, 158, 168, 186, 197, 317
Kzo9I GATC 3 cut(s) 39, 75, 283
LpnPI CCDG 2 cut(s) 102, 227
Lsp1109I GCAGC 2 cut(s) 104, 107
MaeI CTAG 2 cut(s) 270, 305
MalI GATC 3 cut(s) 41, 77, 285
MboI GATC 3 cut(s) 39, 75, 283
MboII GAAGA 4 cut(s) 137, 187, 190, 293
MflI RGATCY 1 cut(s) 283
MluCI AATT 1 cut(s) 149
MnlI CCTC 4 cut(s) 19, 70, 73, 76
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 214
NcoI CCATGG 1 cut(s) 99
NdeII GATC 3 cut(s) 39, 75, 283
NheI GCTAGC 1 cut(s) 304
NlaIII CATG 6 cut(s) 103, 158, 168, 186, 197, 317
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 3 cut(s) 94, 97, 325
PspPI GGNCC 1 cut(s) 6
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 318
SatI GCNGC 3 cut(s) 93, 96, 324
Sau3AI GATC 3 cut(s) 39, 75, 283
Sau96I GGNCC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 214
SetI ASST 7 cut(s) 112, 121, 225, 246, 259, 297, 310
SfcI CTRYAG 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
Sse9I AATT 1 cut(s) 149
SspMI CTAG 2 cut(s) 270, 305
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 99
TaqI TCGA 2 cut(s) 38, 133
TasI AATT 1 cut(s) 149
TfiI GAWTC 1 cut(s) 190
TseI GCWGC 3 cut(s) 92, 95, 323
TspDTI ATGAA 5 cut(s) 45, 138, 158, 203, 330
XspI CTAG 2 cut(s) 270, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.