Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom06g02010 |
| rosa_chinensis | RchiOBHm_Chr7g0212371 |
| rosa_laevigata | RLG00000002895 |
| rosa_roxburghii | Rroxscaffold_3G00246890 |
| rosa_rugosa | Rorug07G0133400 |
| rosa_samantha | Rh2BG243700 Rh5DG381900 Rh7AG266200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 23, 81, 84 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AfaI | GTAC | 1 cut(s) | 104 |
| AgsI | TTSAA | 1 cut(s) | 56 |
| Ama87I | CYCGRG | 1 cut(s) | 124 |
| AseI | ATTAAT | 1 cut(s) | 59 |
| AspLEI | GCGC | 1 cut(s) | 110 |
| AvaI | CYCGRG | 1 cut(s) | 124 |
| AxyI | CCTNAGG | 1 cut(s) | 98 |
| BbsI | GAAGAC | 1 cut(s) | 41 |
| BisI | GCNGC | 2 cut(s) | 82, 85 |
| BlsI | GCNGC | 2 cut(s) | 83, 86 |
| BmeT110I | CYCGRG | 1 cut(s) | 124 |
| BpiI | GAAGAC | 1 cut(s) | 41 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 1 cut(s) | 125 |
| Bse21I | CCTNAGG | 1 cut(s) | 98 |
| BseDI | CCNNGG | 1 cut(s) | 125 |
| BseMII | CTCAG | 1 cut(s) | 89 |
| BseRI | GAGGAG | 1 cut(s) | 41 |
| BsiHKCI | CYCGRG | 1 cut(s) | 124 |
| BsoBI | CYCGRG | 1 cut(s) | 124 |
| BspACI | CCGC | 3 cut(s) | 23, 81, 84 |
| BspCNI | CTCAG | 1 cut(s) | 90 |
| BssECI | CCNNGG | 1 cut(s) | 125 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstDEI | CTNAG | 1 cut(s) | 98 |
| BstHHI | GCGC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 1 cut(s) | 41 |
| Bsu36I | CCTNAGG | 1 cut(s) | 98 |
| CfoI | GCGC | 1 cut(s) | 110 |
| CseI | GACGC | 1 cut(s) | 77 |
| Csp6I | GTAC | 1 cut(s) | 103 |
| CviJI | RGCY | 2 cut(s) | 87, 130 |
| CviKI_1 | RGCY | 2 cut(s) | 87, 130 |
| CviQI | GTAC | 1 cut(s) | 103 |
| DdeI | CTNAG | 1 cut(s) | 98 |
| Eco81I | CCTNAGG | 1 cut(s) | 98 |
| Eco88I | CYCGRG | 1 cut(s) | 124 |
| FaiI | YATR | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 85 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 85 |
| GlaI | GCGC | 1 cut(s) | 109 |
| GluI | GCNGC | 2 cut(s) | 82, 85 |
| HgaI | GACGC | 1 cut(s) | 77 |
| HhaI | GCGC | 1 cut(s) | 110 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin6I | GCGC | 1 cut(s) | 108 |
| HinP1I | GCGC | 1 cut(s) | 108 |
| Hpy188I | TCNGA | 1 cut(s) | 67 |
| Hpy188III | TCNNGA | 2 cut(s) | 97, 124 |
| Hpy99I | CGWCG | 1 cut(s) | 71 |
| HpyF3I | CTNAG | 1 cut(s) | 98 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| HspAI | GCGC | 1 cut(s) | 108 |
| LpnPI | CCDG | 1 cut(s) | 110 |
| MboII | GAAGA | 2 cut(s) | 26, 46 |
| MfeI | CAATTG | 1 cut(s) | 76 |
| MluCI | AATT | 2 cut(s) | 56, 76 |
| MmeI | TCCRAC | 1 cut(s) | 90 |
| MnlI | CCTC | 3 cut(s) | 19, 93, 120 |
| MseI | TTAA | 1 cut(s) | 59 |
| MunI | CAATTG | 1 cut(s) | 76 |
| PkrI | GCNGC | 2 cut(s) | 83, 86 |
| PshBI | ATTAAT | 1 cut(s) | 59 |
| RsaI | GTAC | 1 cut(s) | 104 |
| RsaNI | GTAC | 1 cut(s) | 103 |
| SaqAI | TTAA | 1 cut(s) | 59 |
| SatI | GCNGC | 2 cut(s) | 82, 85 |
| SetI | ASST | 2 cut(s) | 104, 150 |
| SgeI | CNNG | 5 cut(s) | 53, 109, 136, 138, 143 |
| Sse9I | AATT | 2 cut(s) | 56, 76 |
| SsiI | CCGC | 3 cut(s) | 23, 81, 84 |
| TaqI | TCGA | 1 cut(s) | 132 |
| TasI | AATT | 2 cut(s) | 56, 76 |
| TauI | GCSGC | 2 cut(s) | 84, 87 |
| Tru1I | TTAA | 1 cut(s) | 59 |
| Tru9I | TTAA | 1 cut(s) | 59 |
| TspDTI | ATGAA | 2 cut(s) | 27, 33 |
| VspI | ATTAAT | 1 cut(s) | 59 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 148 |