Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom06g02010 |
| rosa_chinensis | RchiOBHm_Chr7g0212371 |
| rosa_laevigata | RLG00000002895 |
| rosa_roxburghii | Rroxscaffold_3G00246890 |
| rosa_rugosa | Rorug07G0133400 |
| rosa_samantha | Rh2BG243700 Rh5DG381900 Rh7AG266200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 188 |
| AciI | CCGC | 2 cut(s) | 84, 92 |
| AcyI | GRCGYC | 1 cut(s) | 12 |
| AfaI | GTAC | 1 cut(s) | 47 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 42, 188 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 171 |
| AluBI | AGCT | 1 cut(s) | 169 |
| AluI | AGCT | 1 cut(s) | 169 |
| Alw26I | GTCTC | 1 cut(s) | 50 |
| Ama87I | CYCGRG | 1 cut(s) | 40 |
| AoxI | GGCC | 1 cut(s) | 28 |
| AsuC2I | CCSGG | 1 cut(s) | 161 |
| AsuHPI | GGTGA | 1 cut(s) | 132 |
| AvaI | CYCGRG | 1 cut(s) | 40 |
| BcnI | CCSGG | 1 cut(s) | 161 |
| BcoDI | GTCTC | 1 cut(s) | 50 |
| BfaI | CTAG | 1 cut(s) | 95 |
| Bme1390I | CCNGG | 1 cut(s) | 161 |
| BmeT110I | CYCGRG | 1 cut(s) | 40 |
| BmrFI | CCNGG | 1 cut(s) | 161 |
| BpuMI | CCSGG | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 1 cut(s) | 12 |
| BsaJI | CCNNGG | 2 cut(s) | 41, 68 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 42, 188 |
| Bse118I | RCCGGY | 2 cut(s) | 107, 195 |
| BseDI | CCNNGG | 2 cut(s) | 41, 68 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 42, 188 |
| BsgI | GTGCAG | 1 cut(s) | 119 |
| Bsh1285I | CGRYCG | 1 cut(s) | 160 |
| BshFI | GGCC | 1 cut(s) | 30 |
| BsiEI | CGRYCG | 1 cut(s) | 160 |
| BsiHKCI | CYCGRG | 1 cut(s) | 40 |
| BsiSI | CCGG | 3 cut(s) | 108, 160, 196 |
| BslFI | GGGAC | 1 cut(s) | 23 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 42, 188 |
| BsmAI | GTCTC | 1 cut(s) | 50 |
| BsmFI | GGGAC | 1 cut(s) | 23 |
| BsnI | GGCC | 1 cut(s) | 30 |
| BsoBI | CYCGRG | 1 cut(s) | 40 |
| BspACI | CCGC | 2 cut(s) | 84, 92 |
| BspANI | GGCC | 1 cut(s) | 30 |
| BsrFI | RCCGGY | 2 cut(s) | 107, 195 |
| BssAI | RCCGGY | 2 cut(s) | 107, 195 |
| BssECI | CCNNGG | 2 cut(s) | 41, 68 |
| BssNI | GRCGYC | 1 cut(s) | 12 |
| BssT1I | CCWWGG | 1 cut(s) | 68 |
| Bst4CI | ACNGT | 1 cut(s) | 50 |
| BstACI | GRCGYC | 1 cut(s) | 12 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 117 |
| BstMAI | GTCTC | 1 cut(s) | 50 |
| BstMCI | CGRYCG | 1 cut(s) | 160 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 117 |
| BstSCI | CCNGG | 1 cut(s) | 159 |
| BsuRI | GGCC | 1 cut(s) | 30 |
| Cfr10I | RCCGGY | 2 cut(s) | 107, 195 |
| CseI | GACGC | 1 cut(s) | 20 |
| Csp6I | GTAC | 1 cut(s) | 46 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 7, 42 |
| CviJI | RGCY | 3 cut(s) | 30, 73, 169 |
| CviKI_1 | RGCY | 3 cut(s) | 30, 73, 169 |
| CviQI | GTAC | 1 cut(s) | 46 |
| EciI | GGCGGA | 1 cut(s) | 73 |
| Eco130I | CCWWGG | 1 cut(s) | 68 |
| Eco88I | CYCGRG | 1 cut(s) | 40 |
| EcoT14I | CCWWGG | 1 cut(s) | 68 |
| ErhI | CCWWGG | 1 cut(s) | 68 |
| FaqI | GGGAC | 1 cut(s) | 23 |
| FauI | CCCGC | 1 cut(s) | 99 |
| FspBI | CTAG | 1 cut(s) | 95 |
| HaeIII | GGCC | 1 cut(s) | 30 |
| HapII | CCGG | 3 cut(s) | 108, 160, 196 |
| HgaI | GACGC | 1 cut(s) | 20 |
| Hin1I | GRCGYC | 1 cut(s) | 12 |
| HinfI | GANTC | 1 cut(s) | 126 |
| HpaII | CCGG | 3 cut(s) | 108, 160, 196 |
| HphI | GGTGA | 1 cut(s) | 132 |
| Hpy166II | GTNNAC | 1 cut(s) | 179 |
| Hpy188I | TCNGA | 1 cut(s) | 10 |
| Hpy188III | TCNNGA | 2 cut(s) | 40, 176 |
| Hpy8I | GTNNAC | 1 cut(s) | 179 |
| Hpy99I | CGWCG | 1 cut(s) | 14 |
| HpyCH4III | ACNGT | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 100 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 117 |
| Hsp92I | GRCGYC | 1 cut(s) | 12 |
| LpnPI | CCDG | 5 cut(s) | 121, 136, 143, 173, 195 |
| MaeI | CTAG | 1 cut(s) | 95 |
| MmeI | TCCRAC | 1 cut(s) | 33 |
| MnlI | CCTC | 3 cut(s) | 36, 41, 148 |
| MspI | CCGG | 3 cut(s) | 108, 160, 196 |
| MspR9I | CCNGG | 1 cut(s) | 161 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 117 |
| NciI | CCSGG | 1 cut(s) | 161 |
| NmeAIII | GCCGAG | 1 cut(s) | 79 |
| PfeI | GAWTC | 1 cut(s) | 126 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 188 |
| RsaI | GTAC | 1 cut(s) | 47 |
| RsaNI | GTAC | 1 cut(s) | 46 |
| ScrFI | CCNGG | 1 cut(s) | 161 |
| SetI | ASST | 2 cut(s) | 47, 171 |
| SgrAI | CRCCGGYG | 1 cut(s) | 195 |
| SsiI | CCGC | 2 cut(s) | 84, 92 |
| SspMI | CTAG | 1 cut(s) | 95 |
| StyD4I | CCNGG | 1 cut(s) | 159 |
| StyI | CCWWGG | 1 cut(s) | 68 |
| TaaI | ACNGT | 1 cut(s) | 50 |
| TaqI | TCGA | 1 cut(s) | 75 |
| TfiI | GAWTC | 1 cut(s) | 126 |
| TspGWI | ACGGA | 1 cut(s) | 25 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 188 |
| XspI | CTAG | 1 cut(s) | 95 |