Rh7AG266200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019321
Physical Location & Seq
Forward (+)
27502490 .. 27510216
7727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG266200.1

Sequence Viewer

Length: 363 bp
ATGGTTGTTTATGAAGATGAAGTGGAGGAATGGAAGACACAAGTTGGGAACTTTGAATTGATGAGTAGAAGACTGGTGCAGTTGATCATGAGGGCCTCAGCCACCGCGTTATTACTTGCCTTGTTGATCTTGATTTTTGTTGCATCCTCCTCCTCTATTCCGATCCATTCGTCGTCAGCAGCAGCCATGGAAGAAGGTTCTGCAGGTAATGAAGAAAATCGAGGGACGATGAAAGAATTGCATGGGAATACATGGCAAGGGAAGAAGACATGGATGAATCATGGAAGTTTTCGCAGCCCCCGGAAACACCTTGTCAAGTACCCAACAGAGCTTCCATTTCAAGCTCAAGAGTTGTCTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.48

Weight (kDa)

6.42

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019321)

Species Orthologous Gene IDs
pyrus_communis pycom06g02010
rosa_chinensis RchiOBHm_Chr7g0212371
rosa_laevigata RLG00000002895
rosa_roxburghii Rroxscaffold_3G00246890
rosa_rugosa Rorug07G0133400
rosa_samantha Rh2BG243700 Rh5DG381900 Rh7AG266200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 194
AccII CGCG 1 cut(s) 107
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 157
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 2 cut(s) 56, 341
AluBI AGCT 2 cut(s) 331, 344
AluI AGCT 2 cut(s) 331, 344
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 179, 182, 294
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 301
BbsI GAAGAC 3 cut(s) 41, 76, 272
BbvCI CCTCAGC 1 cut(s) 97
BbvI GCAGC 3 cut(s) 191, 194, 306
BclI TGATCA 1 cut(s) 84
BcnI CCSGG 1 cut(s) 301
BfaI CTAG 1 cut(s) 361
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 3 cut(s) 180, 183, 295
BlsI GCNGC 3 cut(s) 181, 184, 296
Bme1390I CCNGG 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 152
BpiI GAAGAC 3 cut(s) 41, 76, 272
Bpu10I CCTNAGC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 301
BsaJI CCNNGG 2 cut(s) 186, 299
Bse1I ACTGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 186, 299
BseGI GGATG 2 cut(s) 143, 279
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 139, 142
BseXI GCAGC 3 cut(s) 191, 194, 306
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 3 cut(s) 84, 126, 162
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 1 cut(s) 105
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 110
BspFNI CGCG 1 cut(s) 107
BspHI TCATGA 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 186, 299
BssMI GATC 3 cut(s) 84, 126, 162
BssT1I CCWWGG 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 2 cut(s) 143, 279
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 3 cut(s) 87, 129, 165
BstMBI GATC 3 cut(s) 84, 126, 162
BstSCI CCNGG 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 191, 194, 306
BstV2I GAAGAC 3 cut(s) 41, 76, 272
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 186
BtsCI GGATG 2 cut(s) 143, 279
BveI ACCTGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 319
CviAII CATG 6 cut(s) 88, 187, 242, 252, 270, 281
CviJI RGCY 6 cut(s) 95, 101, 185, 297, 331, 344
CviKI_1 RGCY 6 cut(s) 95, 101, 185, 297, 331, 344
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 97
DpnI GATC 3 cut(s) 86, 128, 164
DpnII GATC 3 cut(s) 84, 126, 162
Eco130I CCWWGG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 6 cut(s) 91, 190, 245, 255, 273, 284
FaiI YATR 7 cut(s) 12, 89, 188, 243, 253, 271, 282
FaqI GGGAC 1 cut(s) 238
FatI CATG 6 cut(s) 87, 186, 241, 251, 269, 280
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 180, 183, 295
FokI GGATG 2 cut(s) 130, 286
Fsp4HI GCNGC 3 cut(s) 180, 183, 295
FspBI CTAG 1 cut(s) 361
GluI GCNGC 3 cut(s) 180, 183, 295
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 301
Hin1II CATG 6 cut(s) 91, 190, 245, 255, 273, 284
HinfI GANTC 1 cut(s) 277
HpaII CCGG 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 3 cut(s) 88, 130, 347
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 4 cut(s) 79, 143, 203, 241
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 6 cut(s) 91, 190, 245, 255, 273, 284
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 3 cut(s) 84, 126, 162
LpnPI CCDG 3 cut(s) 59, 189, 314
Lsp1109I GCAGC 3 cut(s) 191, 194, 306
LweI GCATC 1 cut(s) 152
MaeI CTAG 1 cut(s) 361
MalI GATC 3 cut(s) 86, 128, 164
MboI GATC 3 cut(s) 84, 126, 162
MboII GAAGA 7 cut(s) 26, 46, 81, 203, 224, 274, 277
MluCI AATT 2 cut(s) 56, 236
MnlI CCTC 7 cut(s) 19, 84, 106, 157, 160, 163, 215
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 107
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 186
NdeII GATC 3 cut(s) 84, 126, 162
NlaIII CATG 6 cut(s) 91, 190, 245, 255, 273, 284
PagI TCATGA 1 cut(s) 87
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 3 cut(s) 181, 184, 296
PspPI GGNCC 1 cut(s) 93
PstI CTGCAG 1 cut(s) 205
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SatI GCNGC 3 cut(s) 180, 183, 295
Sau3AI GATC 3 cut(s) 84, 126, 162
Sau96I GGNCC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 301
SetI ASST 5 cut(s) 199, 208, 312, 333, 346
SfaNI GCATC 1 cut(s) 152
SfcI CTRYAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 2 cut(s) 56, 236
SsiI CCGC 1 cut(s) 105
SspMI CTAG 1 cut(s) 361
StyD4I CCNGG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 186
TaqI TCGA 1 cut(s) 220
TasI AATT 2 cut(s) 56, 236
TfiI GAWTC 1 cut(s) 277
TseI GCWGC 3 cut(s) 179, 182, 294
TspDTI ATGAA 5 cut(s) 27, 33, 225, 245, 290
XspI CTAG 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.