RLG00000002904

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017439
Physical Location & Seq
Forward (+)
41510281 .. 41511018
738 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002904

Sequence Viewer

Length: 561 bp
ATGCTGCCAACAGGGAAGGCCGGTCTGGAGGATCTCCGCCGTCTATTCTCGAGACCAGGGCTGCACGTTTTCCGGGACGCCACCATACCCATCTCATTTGTGGGCCCACACGTGGTAGAGTTTCTCATTTCTCAGTGGACCAGGATCTCTGGGTTCAACAAAGCAATTTTCGGGTGCTCTGGATCGGAGTTGACGTCGCTGCTCAGACCCGCCATAGCTTTCGGCAATGCGAACTTGCCCTCGAGCTTGATCGACGCAGGAGGAGATGTGAATCGGAAAGTTTCGAATTCCGGGTGTTTGTTATCTCTGGCTGTTCGGAGCAGAAATATTGAAGTTGTGAAGGTTCTTATAGCGTTGGATGATAAGGATTATGGTGTTCTTTGTGGAAAGGAACTTCATCATGAGGAAGGGGTGTTATATTTTGTTTATGGGATCAGGAAGGCTGTTCAGAATATTTGGCTTGGCCTTATTTTGATGGGTTGGCATTTCGAGTTGATCAAGAAGGTTGAGAAGGAAATAAATGGTAGAATCCAAACGAAGAAGAAGAACAATTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4

Protein Analysis

187

Amino Acids

20.68

Weight (kDa)

9.45

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
AciI CCGC 2 cut(s) 37, 210
AclWI GGATC 4 cut(s) 39, 152, 190, 440
AcsI RAATTY 1 cut(s) 286
AcvI CACGTG 1 cut(s) 112
AcyI GRCGYC 2 cut(s) 78, 194
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 2 cut(s) 157, 332
AjnI CCWGG 2 cut(s) 55, 140
AluBI AGCT 2 cut(s) 218, 246
AluI AGCT 2 cut(s) 218, 246
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 4 cut(s) 39, 152, 190, 440
Ama87I CYCGRG 2 cut(s) 49, 241
AoxI GGCC 3 cut(s) 18, 103, 463
ApaI GGGCCC 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 4, 61, 199
ApoI RAATTY 1 cut(s) 286
AspS9I GGNCC 3 cut(s) 103, 104, 138
AsuC2I CCSGG 2 cut(s) 74, 292
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 2 cut(s) 49, 241
AvaII GGWCC 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 107
BbrPI CACGTG 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 48, 186
BccI CCATC 2 cut(s) 98, 469
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 2 cut(s) 57, 142
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 2 cut(s) 74, 292
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 3 cut(s) 5, 62, 200
BlsI GCNGC 3 cut(s) 6, 63, 201
Bme1390I CCNGG 4 cut(s) 57, 74, 142, 292
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 2 cut(s) 49, 241
BmgT120I GGNCC 3 cut(s) 103, 104, 138
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 4 cut(s) 57, 74, 142, 292
BpmI CTGGAG 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 74, 292
BsaAI YACGTR 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 270
BsaHI GRCGYC 2 cut(s) 78, 194
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 56
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 2 cut(s) 57, 142
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 364
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 146, 217
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 2 cut(s) 48, 186
BsgI GTGCAG 1 cut(s) 47
BshFI GGCC 3 cut(s) 20, 105, 465
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 2 cut(s) 49, 241
BsiSI CCGG 3 cut(s) 21, 73, 291
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 3 cut(s) 20, 105, 465
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 2 cut(s) 49, 241
Bsp119I TTCGAA 1 cut(s) 284
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 107, 179
Bsp143I GATC 6 cut(s) 31, 144, 182, 249, 432, 495
BspACI CCGC 2 cut(s) 37, 210
BspANI GGCC 3 cut(s) 20, 105, 465
BspCNI CTCAG 2 cut(s) 145, 216
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 4 cut(s) 39, 152, 190, 440
BspT104I TTCGAA 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 6 cut(s) 31, 144, 182, 249, 432, 495
BssNI GRCGYC 2 cut(s) 78, 194
Bst2UI CCWGG 2 cut(s) 57, 142
BstACI GRCGYC 2 cut(s) 78, 194
BstBAI YACGTR 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 284
BstDEI CTNAG 2 cut(s) 132, 203
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 6 cut(s) 34, 147, 185, 252, 435, 498
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 6 cut(s) 31, 144, 182, 249, 432, 495
BstNI CCWGG 2 cut(s) 57, 142
BstSCI CCNGG 4 cut(s) 55, 72, 140, 290
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 48, 186
BstX2I RGATCY 2 cut(s) 31, 144
BstYI RGATCY 2 cut(s) 31, 144
BsuRI GGCC 3 cut(s) 20, 105, 465
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 140
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 3 cut(s) 103, 104, 138
CseI GACGC 2 cut(s) 86, 263
CviAII CATG 1 cut(s) 401
CviJI RGCY 9 cut(s) 20, 61, 105, 218, 246, 311, 443, 460, 465
CviKI_1 RGCY 9 cut(s) 20, 61, 105, 218, 246, 311, 443, 460, 465
DdeI CTNAG 2 cut(s) 132, 203
DpnI GATC 6 cut(s) 33, 146, 184, 251, 434, 497
DpnII GATC 6 cut(s) 31, 144, 182, 249, 432, 495
EciI GGCGGA 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 112
Eco88I CYCGRG 2 cut(s) 49, 241
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 55, 140
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 1 cut(s) 404
FaiI YATR 7 cut(s) 86, 215, 350, 372, 402, 418, 429
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 400
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 3 cut(s) 5, 62, 200
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 3 cut(s) 5, 62, 200
GluI GCNGC 3 cut(s) 5, 62, 200
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 3 cut(s) 20, 105, 465
HapII CCGG 3 cut(s) 21, 73, 291
HgaI GACGC 2 cut(s) 86, 263
Hin1I GRCGYC 2 cut(s) 78, 194
Hin1II CATG 1 cut(s) 404
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 2 cut(s) 271, 528
HpaII CCGG 3 cut(s) 21, 73, 291
Hpy166II GTNNAC 2 cut(s) 138, 192
Hpy188I TCNGA 5 cut(s) 187, 206, 276, 318, 450
Hpy188III TCNNGA 7 cut(s) 26, 49, 51, 180, 401, 436, 499
Hpy8I GTNNAC 2 cut(s) 138, 192
Hpy99I CGWCG 2 cut(s) 199, 257
HpyAV CCTTC 6 cut(s) 10, 334, 401, 433, 496, 505
HpyCH4IV ACGT 3 cut(s) 66, 111, 194
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 132, 203
HpySE526I ACGT 3 cut(s) 66, 111, 194
Hsp92I GRCGYC 2 cut(s) 78, 194
Hsp92II CATG 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 6 cut(s) 31, 144, 182, 249, 432, 495
LmnI GCTCC 1 cut(s) 318
Lsp1109I GCAGC 2 cut(s) 48, 186
MaeII ACGT 3 cut(s) 66, 111, 194
MalI GATC 6 cut(s) 33, 146, 184, 251, 434, 497
MboI GATC 6 cut(s) 31, 144, 182, 249, 432, 495
MboII GAAGA 3 cut(s) 550, 553, 556
MflI RGATCY 2 cut(s) 31, 144
MhlI GDGCHC 2 cut(s) 107, 179
MluCI AATT 3 cut(s) 165, 286, 550
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 4 cut(s) 22, 250, 254, 397
MspI CCGG 3 cut(s) 21, 73, 291
MspR9I CCNGG 4 cut(s) 57, 74, 142, 292
MvaI CCWGG 2 cut(s) 57, 142
NciI CCSGG 2 cut(s) 74, 292
NdeII GATC 6 cut(s) 31, 144, 182, 249, 432, 495
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 1 cut(s) 105
NspV TTCGAA 1 cut(s) 284
PaeR7I CTCGAG 2 cut(s) 49, 241
PagI TCATGA 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PfeI GAWTC 2 cut(s) 271, 528
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 3 cut(s) 6, 63, 201
PmaCI CACGTG 1 cut(s) 112
PmlI CACGTG 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 55, 140
PspCI CACGTG 1 cut(s) 112
PspGI CCWGG 2 cut(s) 55, 140
PspN4I GGNNCC 1 cut(s) 105
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 3 cut(s) 103, 104, 138
PspXI VCTCGAGB 1 cut(s) 241
PsuI RGATCY 2 cut(s) 31, 144
SatI GCNGC 3 cut(s) 5, 62, 200
Sau3AI GATC 6 cut(s) 31, 144, 182, 249, 432, 495
Sau96I GGNCC 3 cut(s) 103, 104, 138
ScrFI CCNGG 4 cut(s) 57, 74, 142, 292
SduI GDGCHC 2 cut(s) 107, 179
SetI ASST 7 cut(s) 69, 114, 197, 220, 248, 345, 507
Sfr274I CTCGAG 2 cut(s) 49, 241
SfuI TTCGAA 1 cut(s) 284
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 2 cut(s) 49, 241
SmlI CTYRAG 2 cut(s) 49, 241
SmoI CTYRAG 2 cut(s) 49, 241
Sse9I AATT 3 cut(s) 165, 286, 550
SsiI CCGC 2 cut(s) 37, 210
SspI AATATT 2 cut(s) 328, 454
StyD4I CCNGG 4 cut(s) 55, 72, 140, 290
TaiI ACGT 3 cut(s) 69, 114, 197
TaqI TCGA 5 cut(s) 50, 242, 252, 284, 489
TasI AATT 3 cut(s) 165, 286, 550
TfiI GAWTC 2 cut(s) 271, 528
TscAI CASTG 1 cut(s) 140
TseI GCWGC 3 cut(s) 4, 61, 199
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XhoI CTCGAG 2 cut(s) 49, 241
ZraI GACGTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.