Rh3DG132400

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017439
Physical Location & Seq
Forward (+)
11284823 .. 11285176
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG132400.1

Sequence Viewer

Length: 354 bp
ATGCTGCCGACAGGGAAGGCCGGTCTGGAGGATCTCCGTCGTCTGTTCGCGAGACCAGGGCTGCACGTTTTCCGGGATGCCACCATACCCATCTCATTTATGGGCCCACACGTGGTGGAGTTTCTCATTTCTCAGCGGACCCGGATCTCTAGGTTCAATTTCTTCCTCAACAAAGCAGTTTCCGGGTGCTCTGGATTGGAGTTGACGGCGCTGCTCAGACCCGCCATAGCTTCCGGCAATGCAAACTTGGTCTCGAGCTTGATCAACTCCAAATTGCATGGAGACCTCAATCTTCGGCATCTTATCCGACCTGCAGACTTTGGGAGTTGGGGCATCTTCGCTTGGAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4

Protein Analysis

117

Amino Acids

12.94

Weight (kDa)

11.38

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 1 cut(s) 50
AciI CCGC 2 cut(s) 136, 222
AclWI GGATC 2 cut(s) 39, 152
AcvI CACGTG 1 cut(s) 112
AdeI CACNNNGTG 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 109
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 3 cut(s) 230, 258, 351
AluI AGCT 3 cut(s) 230, 258, 351
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 3 cut(s) 46, 256, 276
AlwI GGATC 2 cut(s) 39, 152
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 2 cut(s) 18, 103
ApaI GGGCCC 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 4, 61, 211
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 3 cut(s) 103, 104, 138
AsuC2I CCSGG 3 cut(s) 74, 142, 184
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 138
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 107
BbrPI CACGTG 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 48, 198
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 57
BclI TGATCA 1 cut(s) 261
BcnI CCSGG 3 cut(s) 74, 142, 184
BcoDI GTCTC 3 cut(s) 46, 256, 276
BfaI CTAG 2 cut(s) 150, 352
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 3 cut(s) 5, 62, 212
BlsI GCNGC 3 cut(s) 6, 63, 213
Bme1390I CCNGG 4 cut(s) 57, 74, 142, 184
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 103, 104, 138
BmiI GGNNCC 2 cut(s) 105, 140
BmrFI CCNGG 4 cut(s) 57, 74, 142, 184
BmsI GCATC 3 cut(s) 67, 307, 342
BpmI CTGGAG 1 cut(s) 47
BpuMI CCSGG 3 cut(s) 74, 142, 184
BsaAI YACGTR 1 cut(s) 112
BsaI GGTCTC 3 cut(s) 46, 256, 276
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 146, 229
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 2 cut(s) 48, 198
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 20, 105
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 5 cut(s) 21, 73, 142, 183, 234
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 3 cut(s) 46, 256, 276
BsnI GGCC 2 cut(s) 20, 105
Bso31I GGTCTC 3 cut(s) 46, 256, 276
BsoBI CYCGRG 1 cut(s) 253
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 107, 191
Bsp143I GATC 3 cut(s) 31, 144, 261
Bsp68I TCGCGA 1 cut(s) 50
BspACI CCGC 2 cut(s) 136, 222
BspANI GGCC 2 cut(s) 20, 105
BspCNI CTCAG 2 cut(s) 145, 228
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 105, 140
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 2 cut(s) 39, 152
BspTNI GGTCTC 3 cut(s) 46, 256, 276
BsrDI GCAATG 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 3 cut(s) 31, 144, 261
Bst2UI CCWGG 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 132, 215
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 34, 147, 264
BstMAI GTCTC 3 cut(s) 46, 256, 276
BstMBI GATC 3 cut(s) 31, 144, 261
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 4 cut(s) 55, 72, 140, 182
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 48, 198
BstX2I RGATCY 2 cut(s) 31, 144
BstYI RGATCY 2 cut(s) 31, 144
BsuRI GGCC 2 cut(s) 20, 105
BtsCI GGATG 1 cut(s) 82
BtuMI TCGCGA 1 cut(s) 50
BveI ACCTGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 3 cut(s) 103, 104, 138
CviAII CATG 1 cut(s) 278
CviJI RGCY 6 cut(s) 20, 61, 105, 230, 258, 351
CviKI_1 RGCY 6 cut(s) 20, 61, 105, 230, 258, 351
DdeI CTNAG 2 cut(s) 132, 215
DpnI GATC 3 cut(s) 33, 146, 263
DpnII GATC 3 cut(s) 31, 144, 261
DraIII CACNNNGTG 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 3 cut(s) 46, 256, 276
Eco47I GGWCC 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 1 cut(s) 281
FaiI YATR 4 cut(s) 86, 101, 227, 279
FatI CATG 1 cut(s) 277
FauI CCCGC 1 cut(s) 229
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 3 cut(s) 5, 62, 212
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 3 cut(s) 5, 62, 212
FspBI CTAG 2 cut(s) 150, 352
GlaI GCGC 1 cut(s) 210
GluI GCNGC 3 cut(s) 5, 62, 212
GsuI CTGGAG 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 2 cut(s) 20, 105
HapII CCGG 5 cut(s) 21, 73, 142, 183, 234
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HpaII CCGG 5 cut(s) 21, 73, 142, 183, 234
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 218, 308
Hpy188III TCNNGA 4 cut(s) 26, 49, 192, 253
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 10
HpyCH4IV ACGT 2 cut(s) 66, 111
HpyCH4V TGCA 4 cut(s) 64, 242, 277, 314
HpyF3I CTNAG 2 cut(s) 132, 215
HpySE526I ACGT 2 cut(s) 66, 111
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 3 cut(s) 31, 144, 261
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 2 cut(s) 48, 198
LweI GCATC 3 cut(s) 67, 307, 342
MaeI CTAG 2 cut(s) 150, 352
MaeII ACGT 2 cut(s) 66, 111
MalI GATC 3 cut(s) 33, 146, 263
MboI GATC 3 cut(s) 31, 144, 261
MboII GAAGA 3 cut(s) 154, 284, 328
MflI RGATCY 2 cut(s) 31, 144
MhlI GDGCHC 2 cut(s) 107, 191
MluCI AATT 2 cut(s) 157, 272
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 4 cut(s) 22, 176, 296, 339
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 5 cut(s) 21, 73, 142, 183, 234
MspR9I CCNGG 4 cut(s) 57, 74, 142, 184
MvaI CCWGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 50
NciI CCSGG 3 cut(s) 74, 142, 184
NdeII GATC 3 cut(s) 31, 144, 261
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 105, 140
NruI TCGCGA 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 253
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 3 cut(s) 6, 63, 213
PmaCI CACGTG 1 cut(s) 112
PmlI CACGTG 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 55
PspCI CACGTG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 105, 140
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 3 cut(s) 103, 104, 138
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 2 cut(s) 31, 144
RruI TCGCGA 1 cut(s) 50
SatI GCNGC 3 cut(s) 5, 62, 212
Sau3AI GATC 3 cut(s) 31, 144, 261
Sau96I GGNCC 3 cut(s) 103, 104, 138
ScrFI CCNGG 4 cut(s) 57, 74, 142, 184
SduI GDGCHC 2 cut(s) 107, 191
SetI ASST 8 cut(s) 69, 114, 155, 232, 260, 288, 313, 353
SfaNI GCATC 3 cut(s) 67, 307, 342
SfcI CTRYAG 1 cut(s) 312
Sfr274I CTCGAG 1 cut(s) 253
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 2 cut(s) 157, 272
SsiI CCGC 2 cut(s) 136, 222
SspMI CTAG 2 cut(s) 150, 352
StyD4I CCNGG 4 cut(s) 55, 72, 140, 182
TaiI ACGT 2 cut(s) 69, 114
TaqI TCGA 1 cut(s) 254
TasI AATT 2 cut(s) 157, 272
TseI GCWGC 3 cut(s) 4, 61, 211
TspGWI ACGGA 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XhoI CTCGAG 1 cut(s) 253
XspI CTAG 2 cut(s) 150, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.