Rorug05G0495400

Ankyrin repeat domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017439
Physical Location & Seq
Forward (+)
67752620 .. 67753099
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0495400.1

Sequence Viewer

Length: 480 bp
ATGCCGTGGCTAGTAGCAGGAGATTTCAATGAAATTTTAAGTAATGCAGACAAGTCTGGAGGGCCTTCCCGAGGTGCAGCACCTATGGCAAGGTTTCGTCAAGCCTTAGTGGATTGTGATCTTGCTGATATGGGTTTTTCTGGCTCCCGGTTCACTTGGGCTAATAGATTTACAAAGGAGAGGCTGGACCGTGCTTGTCGAAACCCCACCTGGGGCAATATGTTTCCCTGTTCACGTGTGCTCACCTTACCTTTGAGTCGCTCTGATCATAATCCTCTCCTTGTTGAAGTTAACTTTGAATTGGTTGTCACTCACCGTACACCTAAACGGTTTCGGTTTGAAGAAATGTGGGCACAACATGGTGACCGCCCTAATGTCATTCAGAACGGTTGGATGATACCATCTACAGGGGAACCGATGCAACAAGTCTATCGAAAAATCCAGCATACAGATAACATGCATGTTATTGGAATGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4

Protein Analysis

159

Amino Acids

18.19

Weight (kDa)

9.02

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 367
AcsI RAATTY 1 cut(s) 33
AcvI CACGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 71, 211, 212, 407
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 4 cut(s) 28, 287, 299, 341
AjnI CCWGG 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 69
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 62, 187
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 235, 305, 374
AvaI CYCGRG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 355
BbrPI CACGTG 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 211
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 1 cut(s) 148
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 148, 211
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 69
BmgT120I GGNCC 2 cut(s) 62, 187
BmiI GGNNCC 2 cut(s) 145, 414
BmrFI CCNGG 2 cut(s) 148, 211
BmsI GCATC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 236
BsaBI GATNNNNATC 2 cut(s) 117, 270
BsaJI CCNNGG 3 cut(s) 5, 70, 210
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 211, 212, 407
Bse8I GATNNNNATC 2 cut(s) 117, 270
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 3 cut(s) 5, 70, 210
BseGI GGATG 1 cut(s) 399
BseJI GATNNNNATC 2 cut(s) 117, 270
BseLI CCNNNNNNNGG 4 cut(s) 71, 211, 212, 407
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 1 cut(s) 89
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 71, 211, 212, 407
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 243, 355
Bsp143I GATC 2 cut(s) 118, 265
BspACI CCGC 1 cut(s) 367
BspANI GGCC 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 145, 414
BssECI CCNNGG 3 cut(s) 5, 70, 210
BssMI GATC 2 cut(s) 118, 265
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 4 cut(s) 191, 317, 330, 389
BstBAI YACGTR 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 106
BstDSI CCRYGG 1 cut(s) 5
BstEII GGTNACC 1 cut(s) 362
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 399
BstKTI GATC 2 cut(s) 121, 268
BstMBI GATC 2 cut(s) 118, 265
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 2 cut(s) 460, 464
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 146, 209
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 62, 187
Csp6I GTAC 1 cut(s) 318
CviAII CATG 3 cut(s) 359, 457, 461
CviJI RGCY 6 cut(s) 10, 64, 104, 144, 161, 184
CviKI_1 RGCY 6 cut(s) 10, 64, 104, 144, 161, 184
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 1 cut(s) 106
DpnI GATC 2 cut(s) 120, 267
DpnII GATC 2 cut(s) 118, 265
Eco47I GGWCC 1 cut(s) 187
Eco72I CACGTG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 362
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 209
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 3 cut(s) 362, 460, 464
FaiI YATR 9 cut(s) 86, 131, 221, 270, 360, 447, 458, 462, 478
FatI CATG 3 cut(s) 358, 456, 460
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 64
HapII CCGG 1 cut(s) 148
Hin1II CATG 3 cut(s) 362, 460, 464
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 1 cut(s) 256
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 1 cut(s) 148
HphI GGTGA 3 cut(s) 235, 305, 374
Hpy166II GTNNAC 4 cut(s) 153, 233, 292, 320
Hpy188I TCNGA 2 cut(s) 265, 384
Hpy188III TCNNGA 2 cut(s) 57, 69
Hpy8I GTNNAC 4 cut(s) 153, 233, 292, 320
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 4 cut(s) 191, 317, 330, 389
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 4 cut(s) 47, 77, 421, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 362, 460, 464
Ksp22I TGATCA 1 cut(s) 265
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 2 cut(s) 118, 265
LmnI GCTCC 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 1 cut(s) 408
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 2 cut(s) 307, 362
MalI GATC 2 cut(s) 120, 267
MboI GATC 2 cut(s) 118, 265
MboII GAAGA 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 243, 355
MluCI AATT 2 cut(s) 33, 299
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 4 cut(s) 53, 65, 174, 285
Mph1103I ATGCAT 1 cut(s) 462
MseI TTAA 2 cut(s) 38, 291
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 2 cut(s) 148, 211
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 148
NdeII GATC 2 cut(s) 118, 265
NlaIII CATG 3 cut(s) 362, 460, 464
NlaIV GGNNCC 2 cut(s) 145, 414
NmuCI GTSAC 2 cut(s) 307, 362
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 2 cut(s) 460, 464
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 264
PmaCI CACGTG 1 cut(s) 236
PmlI CACGTG 1 cut(s) 236
PpsI GAGTC 1 cut(s) 264
Ppu21I YACGTR 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 209
PspCI CACGTG 1 cut(s) 236
PspEI GGTNACC 1 cut(s) 362
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 145, 414
PspPI GGNCC 2 cut(s) 62, 187
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 2 cut(s) 38, 291
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 118, 265
Sau96I GGNCC 2 cut(s) 62, 187
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 148, 211
SduI GDGCHC 2 cut(s) 243, 355
SetI ASST 8 cut(s) 76, 85, 95, 212, 238, 248, 253, 325
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 1 cut(s) 187
Sse9I AATT 2 cut(s) 33, 299
SsiI CCGC 1 cut(s) 367
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 146, 209
TaaI ACNGT 4 cut(s) 191, 317, 330, 389
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 199, 433
TasI AATT 2 cut(s) 33, 299
Tru1I TTAA 2 cut(s) 38, 291
Tru9I TTAA 2 cut(s) 38, 291
TseFI GTSAC 2 cut(s) 307, 362
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 2 cut(s) 307, 362
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 187
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 1 cut(s) 33
XceI RCATGY 2 cut(s) 460, 464
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.