Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005389.1

Orthogroup ID

OG0017439

Physical Location & Seq

Genomic Coordinates Forward (+)

99274 .. 99627

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005389.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgatgccgacaaggaaggccggtctggaggatctccattgtctgttcgcgagaccagggctgcgcattttttgggacgccaccatacccatctcatttgtgggcccacatgtgatggagtttctcatttctcagcggacctggatccctgggttcgatttctacttcaacaaagcaattttcgggtgctctggattagagttaacggtgctgctcagacccgccatagcttctggcaatgcgaacttgatctcgagcttgatcgacgccaaattgcatggagacctcaatcttcggcatgttatccgacctgcagactttgggagttggggcatcttcgcttggaggagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

8.8

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017439)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395561
rosa_laevigata	RLG00000002904 RLG00000012660
rosa_multiflora	Rmu_sc0001781.1_g000018 Rmu_sc0004616.1_g000006 Rmu_sc0005003.1_g000011 Rmu_sc0005389.1_g000026 Rmu_sc0006492.1_g000012
rosa_rugosa	Rorug05G0495400
rosa_samantha	Rh3CG133500 Rh3DG132400 Rh5CG380100 Rh7BG210700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	50
AciI	CCGC	2 cut(s)	136, 222
AclWI	GGATC	3 cut(s)	39, 139, 152
AcyI	GRCGYC	2 cut(s)	78, 267
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	3 cut(s)	55, 140, 148
AluBI	AGCT	3 cut(s)	230, 258, 351
AluI	AGCT	3 cut(s)	230, 258, 351
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	46, 276
AlwI	GGATC	3 cut(s)	39, 139, 152
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	18, 103
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	61, 211
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	103, 104, 138
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	48, 198
BccI	CCATC	2 cut(s)	98, 109
BciT130I	CCWGG	3 cut(s)	57, 142, 150
BcoDI	GTCTC	2 cut(s)	46, 276
BfaI	CTAG	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	2 cut(s)	62, 212
BlsI	GCNGC	2 cut(s)	63, 213
Bme1390I	CCNGG	3 cut(s)	57, 142, 150
Bme18I	GGWCC	1 cut(s)	138
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	103, 104, 138
BmiI	GGNNCC	2 cut(s)	105, 146
BmrFI	CCNGG	3 cut(s)	57, 142, 150
BmsI	GCATC	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	78, 267
BsaI	GGTCTC	2 cut(s)	46, 276
BsaJI	CCNNGG	3 cut(s)	56, 148, 149
Bse118I	RCCGGY	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	3 cut(s)	57, 142, 150
BseDI	CCNNGG	3 cut(s)	56, 148, 149
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	2 cut(s)	146, 229
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	48, 198
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	20, 105
BsiHKAI	GWGCWC	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	46, 276
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	20, 105
Bso31I	GGTCTC	2 cut(s)	46, 276
BsoBI	CYCGRG	1 cut(s)	253
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	107, 191
Bsp143I	GATC	4 cut(s)	31, 144, 249, 261
Bsp68I	TCGCGA	1 cut(s)	50
BspACI	CCGC	2 cut(s)	136, 222
BspANI	GGCC	2 cut(s)	20, 105
BspCNI	CTCAG	2 cut(s)	145, 228
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	105, 146
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	3 cut(s)	39, 139, 152
BspTNI	GGTCTC	2 cut(s)	46, 276
BsrDI	GCAATG	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	56, 148, 149
BssMI	GATC	4 cut(s)	31, 144, 249, 261
BssNI	GRCGYC	2 cut(s)	78, 267
Bst2UI	CCWGG	3 cut(s)	57, 142, 150
Bst4CI	ACNGT	1 cut(s)	208
BstACI	GRCGYC	2 cut(s)	78, 267
BstDEI	CTNAG	2 cut(s)	132, 215
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	4 cut(s)	34, 147, 252, 264
BstMAI	GTCTC	2 cut(s)	46, 276
BstMBI	GATC	4 cut(s)	31, 144, 249, 261
BstNI	CCWGG	3 cut(s)	57, 142, 150
BstNSI	RCATGY	2 cut(s)	113, 302
BstSCI	CCNGG	3 cut(s)	55, 140, 148
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	48, 198
BstX2I	RGATCY	2 cut(s)	31, 144
BstYI	RGATCY	2 cut(s)	31, 144
BsuRI	GGCC	2 cut(s)	20, 105
BtuMI	TCGCGA	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	103, 104, 138
CseI	GACGC	2 cut(s)	86, 275
CviAII	CATG	3 cut(s)	110, 278, 299
CviJI	RGCY	6 cut(s)	20, 61, 105, 230, 258, 351
CviKI_1	RGCY	6 cut(s)	20, 61, 105, 230, 258, 351
DdeI	CTNAG	2 cut(s)	132, 215
DpnI	GATC	4 cut(s)	33, 146, 251, 263
DpnII	GATC	4 cut(s)	31, 144, 249, 261
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	2 cut(s)	46, 276
Eco47I	GGWCC	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	253
EcoRII	CCWGG	3 cut(s)	55, 140, 148
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	3 cut(s)	113, 281, 302
FaiI	YATR	5 cut(s)	86, 111, 227, 279, 300
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	109, 277, 298
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	62, 212
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	62, 212
FspBI	CTAG	1 cut(s)	352
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	2 cut(s)	62, 212
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	20, 105
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	2 cut(s)	86, 275
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	2 cut(s)	78, 267
Hin1II	CATG	3 cut(s)	113, 281, 302
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	218, 308
Hpy188III	TCNNGA	4 cut(s)	26, 49, 192, 253
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	277, 314
HpyF3I	CTNAG	2 cut(s)	132, 215
Hsp92I	GRCGYC	2 cut(s)	78, 267
Hsp92II	CATG	3 cut(s)	113, 281, 302
HspAI	GCGC	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	31, 144, 249, 261
LmnI	GCTCC	1 cut(s)	348
Lsp1109I	GCAGC	2 cut(s)	48, 198
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	352
MalI	GATC	4 cut(s)	33, 146, 251, 263
MboI	GATC	4 cut(s)	31, 144, 249, 261
MboII	GAAGA	2 cut(s)	284, 328
MflI	RGATCY	2 cut(s)	31, 144
MhlI	GDGCHC	2 cut(s)	107, 191
MluCI	AATT	2 cut(s)	177, 272
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	3 cut(s)	22, 296, 339
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	3 cut(s)	57, 142, 150
MvaI	CCWGG	3 cut(s)	57, 142, 150
MvnI	CGCG	1 cut(s)	50
NdeII	GATC	4 cut(s)	31, 144, 249, 261
NlaIII	CATG	3 cut(s)	113, 281, 302
NlaIV	GGNNCC	2 cut(s)	105, 146
NruI	TCGCGA	1 cut(s)	50
NsbI	TGCGCA	1 cut(s)	65
NspI	RCATGY	2 cut(s)	113, 302
PaeR7I	CTCGAG	1 cut(s)	253
PasI	CCCWGGG	1 cut(s)	149
PciI	ACATGT	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	63, 213
PscI	ACATGT	1 cut(s)	109
Psp6I	CCWGG	3 cut(s)	55, 140, 148
PspGI	CCWGG	3 cut(s)	55, 140, 148
PspN4I	GGNNCC	2 cut(s)	105, 146
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	3 cut(s)	103, 104, 138
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	31, 144
RruI	TCGCGA	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	2 cut(s)	62, 212
Sau3AI	GATC	4 cut(s)	31, 144, 249, 261
Sau96I	GGNCC	3 cut(s)	103, 104, 138
ScrFI	CCNGG	3 cut(s)	57, 142, 150
SduI	GDGCHC	2 cut(s)	107, 191
SetI	ASST	6 cut(s)	143, 232, 260, 288, 313, 353
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	2 cut(s)	177, 272
SsiI	CCGC	2 cut(s)	136, 222
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	3 cut(s)	55, 140, 148
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	156, 254, 264
TasI	AATT	2 cut(s)	177, 272
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseI	GCWGC	2 cut(s)	61, 211
VpaK11BI	GGWCC	1 cut(s)	138
XceI	RCATGY	2 cut(s)	113, 302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	253
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.