RLG00000002964

Gamma carbonic anhydrase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0020551
Physical Location & Seq
Reverse (-)
42336799 .. 42338925
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002964

Sequence Viewer

Length: 423 bp
ATGGTAGTGATGCTGTTCTTTTGTGCAGTGTCTAGGCATCCGACTCTTATGTATGTATTCGATAAAGCTCCTGTTGTTGACAAGGATGCATTTGTGGCCCCAAGTGCCTCCGTCATTGGTGATGTTCAAGTGGGAAGAGGATCTTCTATTTGGTATGGATGTGTATTGAGAGCTGGTATTTGGATATCATTCACACTACTTGTGCATATTGAGAGTAGGATTGATGGGCCGGTTACAACTTCTATCTCAACAAGTCATAGTTGCTCGCCTTGGCTTGATTTGCATTGCAGTGGGATTGGCAATGGCCAAGGGCACCCTCTAGGTACAACTTTTGCAGCTGTCTTGACCCAGGCAATACTGACAGTAGGTTGCCAGTCCATAGTTGCTGGGGTTGCTTTTGTAGATCAGGACCTGTTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hexapep

Protein Analysis

141

Amino Acids

14.92

Weight (kDa)

5.84

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020551)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0071351
rosa_laevigata RLG00000002964
rosa_multiflora Rmu_sc0006990.1_g000002
rosa_roxburghii Rroxscaffold_1G00056810
rosa_samantha Rh5AG468000 Rh5CG510900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 312
AclWI GGATC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 304
AfaI GTAC 1 cut(s) 325
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 3 cut(s) 68, 173, 338
AluI AGCT 3 cut(s) 68, 173, 338
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 412
AoxI GGCC 3 cut(s) 96, 227, 304
ApeKI GCWGC 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 97, 227, 409
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 306
BanI GGYRCC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 350
BfaI CTAG 3 cut(s) 33, 320, 421
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 3 cut(s) 97, 227, 409
BmiI GGNNCC 2 cut(s) 99, 314
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 2 cut(s) 46, 76
BsaJI CCNNGG 3 cut(s) 269, 307, 348
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 2 cut(s) 283, 307
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 269, 307, 348
BseGI GGATG 3 cut(s) 37, 91, 164
BseMI GCAATG 2 cut(s) 283, 307
BseNI ACTGG 1 cut(s) 373
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 1 cut(s) 347
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 45
BshFI GGCC 3 cut(s) 98, 229, 306
BshNI GGYRCC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 230
BsnI GGCC 3 cut(s) 98, 229, 306
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 2 cut(s) 140, 403
BspANI GGCC 3 cut(s) 98, 229, 306
BspLI GGNNCC 2 cut(s) 99, 314
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 283, 307
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 3 cut(s) 269, 307, 348
BssMI GATC 2 cut(s) 140, 403
BssT1I CCWWGG 2 cut(s) 269, 307
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 266
BstF5I GGATG 3 cut(s) 37, 91, 164
BstKTI GATC 2 cut(s) 143, 406
BstMBI GATC 2 cut(s) 140, 403
BstMWI GCNNNNNNNGC 4 cut(s) 95, 104, 280, 392
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 3 cut(s) 98, 229, 306
BtsCI GGATG 3 cut(s) 37, 91, 164
BtsI GCAGTG 2 cut(s) 33, 295
BtsIMutI CAGTG 2 cut(s) 33, 295
Cac8I GCNNGC 1 cut(s) 266
CaiI CAGNNNCTG 1 cut(s) 412
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 97, 227, 409
Csp6I GTAC 1 cut(s) 324
CviJI RGCY 7 cut(s) 68, 98, 173, 229, 274, 306, 338
CviKI_1 RGCY 7 cut(s) 68, 98, 173, 229, 274, 306, 338
CviQI GTAC 1 cut(s) 324
DpnI GATC 2 cut(s) 142, 405
DpnII GATC 2 cut(s) 140, 403
EaeI YGGCCR 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 269, 307
Eco32I GATATC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 348
EcoRV GATATC 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 269, 307
EcoT22I ATGCAT 1 cut(s) 91
ErhI CCWWGG 2 cut(s) 269, 307
FaiI YATR 6 cut(s) 50, 54, 156, 207, 258, 380
FalI AAGNNNNNCTT 2 cut(s) 127, 159
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 3 cut(s) 24, 98, 171
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 3 cut(s) 33, 320, 421
GluI GCNGC 1 cut(s) 336
GsaI CCCAGC 1 cut(s) 390
HaeIII GGCC 3 cut(s) 98, 229, 306
HapII CCGG 1 cut(s) 230
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 343, 407
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 6 cut(s) 26, 89, 205, 283, 288, 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 104, 280, 392
Kzo9I GATC 2 cut(s) 140, 403
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 84, 159, 243, 335, 362, 372, 386, 392
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 2 cut(s) 46, 76
MaeI CTAG 3 cut(s) 33, 320, 421
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 142, 405
MboI GATC 2 cut(s) 140, 403
MboII GAAGA 2 cut(s) 135, 147
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 315
MlsI TGGCCA 1 cut(s) 306
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 3 cut(s) 118, 131, 327
Mox20I TGGCCA 1 cut(s) 306
Mph1103I ATGCAT 1 cut(s) 91
MscI TGGCCA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 95, 104, 280, 392
NdeII GATC 2 cut(s) 140, 403
NlaIV GGNNCC 2 cut(s) 99, 314
NsiI ATGCAT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 409
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 99, 314
PspPI GGNCC 3 cut(s) 97, 227, 409
PspPPI RGGWCCY 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 412
PsuI RGATCY 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 140, 403
Sau96I GGNCC 3 cut(s) 97, 227, 409
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 315
SetI ASST 6 cut(s) 70, 175, 325, 340, 370, 414
SfaNI GCATC 2 cut(s) 46, 76
SinI GGWCC 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 288
SspMI CTAG 3 cut(s) 33, 320, 421
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 2 cut(s) 269, 307
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 60
TscAI CASTG 2 cut(s) 33, 295
TseI GCWGC 1 cut(s) 335
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 2 cut(s) 33, 295
VpaK11BI GGWCC 1 cut(s) 409
XspI CTAG 3 cut(s) 33, 320, 421
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.