Rroxscaffold_1G00056810

Gamma carbonic anhydrase 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0020551
Physical Location & Seq
Forward (+)
78761830 .. 78765306
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056810.1

Sequence Viewer

Length: 150 bp
ATGTGGCATCGGACTCTTATGAATGTATTCGATAAAGCTTCTGTTGTTAACAAAGATGCATTTGTGGCCCCAAGTGCCTCCGTCATTGGTGATGTTCAAGTGGGAAGAGGATCTTCTATTTGGTATAGATGTGTATTGAGAGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hexapep

Protein Analysis

49

Amino Acids

5.43

Weight (kDa)

9.38

Isoelectric Point (pI)

24.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hexapep PF00132 14 - 48 7.8e-06 Bacterial transferase hexapeptide (six repeats)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020551)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0071351
rosa_laevigata RLG00000002964
rosa_multiflora Rmu_sc0006990.1_g000002
rosa_roxburghii Rroxscaffold_1G00056810
rosa_samantha Rh5AG468000 Rh5CG510900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 118
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 2 cut(s) 16, 46
BshFI GGCC 1 cut(s) 68
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 110
BspANI GGCC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 118
BssMI GATC 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 100
BstKTI GATC 1 cut(s) 113
BstMBI GATC 1 cut(s) 110
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 67
CviJI RGCY 2 cut(s) 38, 68
CviKI_1 RGCY 2 cut(s) 38, 68
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 61
FaiI YATR 2 cut(s) 20, 126
FalI AAGNNNNNCTT 2 cut(s) 97, 129
HaeIII GGCC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 1 cut(s) 13
HpaI GTTAAC 1 cut(s) 49
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 110
LweI GCATC 2 cut(s) 16, 46
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 2 cut(s) 105, 117
MflI RGATCY 1 cut(s) 110
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 3 cut(s) 88, 101, 134
Mph1103I ATGCAT 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NdeII GATC 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 110
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 7
SetI ASST 2 cut(s) 40, 145
SfaNI GCATC 2 cut(s) 16, 46
SgeI CNNG 2 cut(s) 84, 110
TaqI TCGA 1 cut(s) 30
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.