Ninja-family protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000003618 RLG00000019629 RLG00000036609 |
| rosa_multiflora | Rmu_sc0002677.1_g000021 |
| rosa_rugosa | Rorug05G0349200 Rorug06G0268500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 6 cut(s) | 176, 188, 197, 286, 289, 304 |
| AclWI | GGATC | 1 cut(s) | 787 |
| AcsI | RAATTY | 2 cut(s) | 436, 626 |
| AcuI | CTGAAG | 2 cut(s) | 441, 591 |
| AcyI | GRCGYC | 2 cut(s) | 200, 224 |
| AgsI | TTSAA | 1 cut(s) | 502 |
| Alw26I | GTCTC | 2 cut(s) | 236, 752 |
| AlwI | GGATC | 1 cut(s) | 787 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 283 |
| ApeKI | GCWGC | 6 cut(s) | 283, 383, 575, 608, 658, 855 |
| ApoI | RAATTY | 2 cut(s) | 436, 626 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 185, 217 |
| AspS9I | GGNCC | 1 cut(s) | 531 |
| AsuHPI | GGTGA | 1 cut(s) | 706 |
| AvaII | GGWCC | 1 cut(s) | 531 |
| BbvI | GCAGC | 5 cut(s) | 270, 370, 562, 595, 670 |
| BccI | CCATC | 3 cut(s) | 667, 720, 808 |
| BceAI | ACGGC | 2 cut(s) | 130, 777 |
| BcoDI | GTCTC | 2 cut(s) | 236, 752 |
| BfaI | CTAG | 3 cut(s) | 113, 357, 704 |
| Bme18I | GGWCC | 1 cut(s) | 531 |
| BmgT120I | GGNCC | 1 cut(s) | 531 |
| BmiI | GGNNCC | 2 cut(s) | 180, 532 |
| BmsI | GCATC | 4 cut(s) | 370, 395, 645, 773 |
| BpmI | CTGGAG | 2 cut(s) | 68, 165 |
| BsaBI | GATNNNNATC | 1 cut(s) | 818 |
| BsaHI | GRCGYC | 2 cut(s) | 200, 224 |
| Bse1I | ACTGG | 1 cut(s) | 182 |
| Bse3DI | GCAATG | 1 cut(s) | 675 |
| Bse8I | GATNNNNATC | 1 cut(s) | 818 |
| BseGI | GGATG | 3 cut(s) | 253, 660, 735 |
| BseJI | GATNNNNATC | 1 cut(s) | 818 |
| BseMI | GCAATG | 1 cut(s) | 675 |
| BseMII | CTCAG | 1 cut(s) | 603 |
| BseNI | ACTGG | 1 cut(s) | 182 |
| BseRI | GAGGAG | 7 cut(s) | 38, 50, 53, 56, 266, 322, 559 |
| BseXI | GCAGC | 5 cut(s) | 270, 370, 562, 595, 670 |
| BseYI | CCCAGC | 2 cut(s) | 740, 802 |
| BslFI | GGGAC | 1 cut(s) | 544 |
| BsmAI | GTCTC | 2 cut(s) | 236, 752 |
| BsmBI | CGTCTC | 2 cut(s) | 236, 752 |
| BsmFI | GGGAC | 1 cut(s) | 544 |
| BsmI | GAATGC | 1 cut(s) | 688 |
| Bsp143I | GATC | 1 cut(s) | 792 |
| BspACI | CCGC | 6 cut(s) | 176, 188, 197, 286, 289, 304 |
| BspCNI | CTCAG | 1 cut(s) | 604 |
| BspLI | GGNNCC | 2 cut(s) | 180, 532 |
| BspPI | GGATC | 1 cut(s) | 787 |
| BspQI | GCTCTTC | 1 cut(s) | 336 |
| BsrDI | GCAATG | 1 cut(s) | 675 |
| BsrI | ACTGG | 1 cut(s) | 182 |
| BssMI | GATC | 1 cut(s) | 792 |
| BssNI | GRCGYC | 2 cut(s) | 200, 224 |
| Bst6I | CTCTTC | 4 cut(s) | 153, 336, 417, 422 |
| BstACI | GRCGYC | 2 cut(s) | 200, 224 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 683 |
| BstC8I | GCNNGC | 2 cut(s) | 110, 348 |
| BstDEI | CTNAG | 1 cut(s) | 612 |
| BstF5I | GGATG | 3 cut(s) | 253, 660, 735 |
| BstKTI | GATC | 1 cut(s) | 795 |
| BstMAI | GTCTC | 2 cut(s) | 236, 752 |
| BstMBI | GATC | 1 cut(s) | 792 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 105, 185, 194, 197, 503, 674, 683 |
| BstV1I | GCAGC | 5 cut(s) | 270, 370, 562, 595, 670 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 814 |
| BtsCI | GGATG | 3 cut(s) | 253, 660, 735 |
| BtsI | GCAGTG | 2 cut(s) | 405, 787 |
| BtsIMutI | CAGTG | 3 cut(s) | 189, 405, 787 |
| Cac8I | GCNNGC | 2 cut(s) | 110, 348 |
| CaiI | CAGNNNCTG | 1 cut(s) | 283 |
| Cfr13I | GGNCC | 1 cut(s) | 531 |
| CseI | GACGC | 3 cut(s) | 189, 213, 289 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 763, 798 |
| CviAII | CATG | 3 cut(s) | 404, 526, 718 |
| DdeI | CTNAG | 1 cut(s) | 612 |
| DpnI | GATC | 1 cut(s) | 794 |
| DpnII | GATC | 1 cut(s) | 792 |
| DraI | TTTAAA | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 4 cut(s) | 153, 336, 417, 422 |
| EarI | CTCTTC | 4 cut(s) | 153, 336, 417, 422 |
| Eco32I | GATATC | 2 cut(s) | 475, 820 |
| Eco47I | GGWCC | 1 cut(s) | 531 |
| Eco57I | CTGAAG | 2 cut(s) | 441, 591 |
| EcoRV | GATATC | 2 cut(s) | 475, 820 |
| Esp3I | CGTCTC | 2 cut(s) | 236, 752 |
| FaeI | CATG | 3 cut(s) | 407, 529, 721 |
| FaiI | YATR | 8 cut(s) | 143, 205, 375, 405, 480, 527, 719, 809 |
| FaqI | GGGAC | 1 cut(s) | 544 |
| FatI | CATG | 3 cut(s) | 403, 525, 717 |
| FokI | GGATG | 3 cut(s) | 260, 667, 742 |
| FspBI | CTAG | 3 cut(s) | 113, 357, 704 |
| GsaI | CCCAGC | 2 cut(s) | 744, 806 |
| GsuI | CTGGAG | 2 cut(s) | 68, 165 |
| HgaI | GACGC | 3 cut(s) | 189, 213, 289 |
| Hin1I | GRCGYC | 2 cut(s) | 200, 224 |
| Hin1II | CATG | 3 cut(s) | 407, 529, 721 |
| HinfI | GANTC | 3 cut(s) | 55, 81, 170 |
| HphI | GGTGA | 1 cut(s) | 706 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188I | TCNGA | 3 cut(s) | 86, 237, 316 |
| Hpy188III | TCNNGA | 2 cut(s) | 826, 847 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyAV | CCTTC | 5 cut(s) | 187, 262, 426, 595, 691 |
| HpyCH4V | TGCA | 7 cut(s) | 134, 386, 403, 482, 658, 686, 855 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 105, 185, 194, 197, 503, 674, 683 |
| HpyF3I | CTNAG | 1 cut(s) | 612 |
| Hsp92I | GRCGYC | 2 cut(s) | 200, 224 |
| Hsp92II | CATG | 3 cut(s) | 407, 529, 721 |
| Kzo9I | GATC | 1 cut(s) | 792 |
| LguI | GCTCTTC | 1 cut(s) | 336 |
| LmnI | GCTCC | 4 cut(s) | 43, 49, 184, 785 |
| LpnPI | CCDG | 8 cut(s) | 32, 44, 113, 195, 332, 726, 816, 839 |
| Lsp1109I | GCAGC | 5 cut(s) | 270, 370, 562, 595, 670 |
| LweI | GCATC | 4 cut(s) | 370, 395, 645, 773 |
| MaeI | CTAG | 3 cut(s) | 113, 357, 704 |
| MaeIII | GTNAC | 1 cut(s) | 273 |
| MalI | GATC | 1 cut(s) | 794 |
| MboI | GATC | 1 cut(s) | 792 |
| MboII | GAAGA | 9 cut(s) | 90, 114, 170, 274, 277, 353, 434, 439, 482 |
| MfeI | CAATTG | 1 cut(s) | 510 |
| MluCI | AATT | 6 cut(s) | 436, 510, 594, 626, 839, 850 |
| MlyI | GAGTC | 1 cut(s) | 164 |
| MmeI | TCCRAC | 3 cut(s) | 273, 294, 597 |
| MseI | TTAA | 3 cut(s) | 353, 440, 837 |
| MslI | CAYNNNNRTG | 1 cut(s) | 812 |
| MspA1I | CMGCKG | 1 cut(s) | 858 |
| MunI | CAATTG | 1 cut(s) | 510 |
| Mva1269I | GAATGC | 1 cut(s) | 688 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 105, 185, 194, 197, 503, 674, 683 |
| NdeII | GATC | 1 cut(s) | 792 |
| NlaIII | CATG | 3 cut(s) | 407, 529, 721 |
| NlaIV | GGNNCC | 2 cut(s) | 180, 532 |
| NmeAIII | GCCGAG | 1 cut(s) | 152 |
| PciSI | GCTCTTC | 1 cut(s) | 336 |
| PctI | GAATGC | 1 cut(s) | 688 |
| PfeI | GAWTC | 2 cut(s) | 55, 81 |
| PleI | GAGTC | 1 cut(s) | 164 |
| PpsI | GAGTC | 1 cut(s) | 164 |
| PspFI | CCCAGC | 2 cut(s) | 740, 802 |
| PspN4I | GGNNCC | 2 cut(s) | 180, 532 |
| PspPI | GGNCC | 1 cut(s) | 531 |
| PstNI | CAGNNNCTG | 1 cut(s) | 283 |
| PvuII | CAGCTG | 1 cut(s) | 858 |
| RseI | CAYNNNNRTG | 1 cut(s) | 812 |
| SapI | GCTCTTC | 1 cut(s) | 336 |
| SaqAI | TTAA | 3 cut(s) | 353, 440, 837 |
| Sau3AI | GATC | 1 cut(s) | 792 |
| Sau96I | GGNCC | 1 cut(s) | 531 |
| SchI | GAGTC | 1 cut(s) | 164 |
| SfaNI | GCATC | 4 cut(s) | 370, 395, 645, 773 |
| SinI | GGWCC | 1 cut(s) | 531 |
| SmiI | ATTTAAAT | 1 cut(s) | 441 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 812 |
| Sse9I | AATT | 6 cut(s) | 436, 510, 594, 626, 839, 850 |
| SsiI | CCGC | 6 cut(s) | 176, 188, 197, 286, 289, 304 |
| SspMI | CTAG | 3 cut(s) | 113, 357, 704 |
| SwaI | ATTTAAAT | 1 cut(s) | 441 |
| TaqI | TCGA | 2 cut(s) | 128, 447 |
| TaqII | GACCGA | 1 cut(s) | 548 |
| TasI | AATT | 6 cut(s) | 436, 510, 594, 626, 839, 850 |
| TauI | GCSGC | 4 cut(s) | 179, 191, 200, 289 |
| TfiI | GAWTC | 2 cut(s) | 55, 81 |
| Tru1I | TTAA | 3 cut(s) | 353, 440, 837 |
| Tru9I | TTAA | 3 cut(s) | 353, 440, 837 |
| TscAI | CASTG | 3 cut(s) | 189, 405, 787 |
| TseI | GCWGC | 6 cut(s) | 283, 383, 575, 608, 658, 855 |
| TspDTI | ATGAA | 2 cut(s) | 7, 746 |
| TspGWI | ACGGA | 2 cut(s) | 254, 260 |
| TspRI | CASTG | 3 cut(s) | 189, 405, 787 |
| VpaK11BI | GGWCC | 1 cut(s) | 531 |
| XapI | RAATTY | 2 cut(s) | 436, 626 |
| XspI | CTAG | 3 cut(s) | 113, 357, 704 |