Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Reverse (-)

43355191 .. 43358511

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0349200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAGTTCGATTTCGGTGATGTTACTAAAAACAATTACAAGAAAACAGGACCCGCCGAAAAATGAATTTTCTTTTGGTTGGCGGAAAAAAGATGAAAAGAGAAGGAAAGGGAGCTCCACATATTCATTGAAACTTGTAACCATGGCCACACTTTCCTGCTCCTACTCTCTTCATCCTCTTTCTTCTTCTTCTGCTTCTTCTTCTTCTTCTTCTTCTTTTTCAACGTCTCTCACTCTCCCGCAACATCAACAACAGCAGACCGAATTCCCAACAAGACCTGAATTCCCATTACTGCTGTTCCGCTGCTCTGCCTCTCTTAAACCCGAAGTCATTACAGAACCAACAAGGCTCTTTGTCCAACCCATTCTCCTTTTAACTACTGGCTTTAACACACCCTTGGACACCCAAACCTTTCTTGCCACTATCAGTGTCTTGGCGGCCATTGCTCTCTCCCTCTTTCTCGGTCTTAAGGGTGACCCTGTGCCTTGCGAGAGGTGTGCTGGCAATGGTGGTACAAAATGTGTCTTCTGTAACAATGGTAAAATGAAGCTAGAAACAGGCTTGGTTGATTGCAAAGTGTGCAAGGGCGCAGATGAAATCTATCTTTGTAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGATATTCTCGACGGTTGTGAACTGGGGTTTATTGATACCTCTCTTTGTAATCGATCTCAATGAATTTTTCTCGGCTTTAGTTGCGAAGGACAGAAATTGTAAATTGTGTTGTTACACTCTATTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

257

Amino Acids

28.51

Weight (kDa)

8.96

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	627
AciI	CCGC	5 cut(s)	53, 82, 239, 301, 437
AcoI	YGGCCR	2 cut(s)	144, 438
AcsI	RAATTY	4 cut(s)	65, 263, 281, 707
AfaI	GTAC	2 cut(s)	514, 619
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	130, 222, 769
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	2 cut(s)	114, 550
AluI	AGCT	2 cut(s)	114, 550
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	642
AoxI	GGCC	2 cut(s)	144, 438
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	4 cut(s)	65, 263, 281, 707
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	28, 485
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	1 cut(s)	551
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	627
BisI	GCNGC	2 cut(s)	304, 438
BlsI	GCNGC	2 cut(s)	305, 439
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	51
BmrI	ACTGGG	1 cut(s)	676
BmuI	ACTGGG	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	517
Bsa29I	ATCGAT	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	141, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bse1I	ACTGG	2 cut(s)	385, 671
Bse3DI	GCAATG	2 cut(s)	441, 511
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	141, 396
BseGI	GGATG	1 cut(s)	172
BseMI	GCAATG	2 cut(s)	441, 511
BseNI	ACTGG	2 cut(s)	385, 671
BseXI	GCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	655
BshFI	GGCC	2 cut(s)	146, 440
BshVI	ATCGAT	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	231
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	146, 440
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	697
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	5 cut(s)	53, 82, 239, 301, 437
BspANI	GGCC	2 cut(s)	146, 440
BspDI	ATCGAT	1 cut(s)	696
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	627
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	441, 511
BsrI	ACTGG	2 cut(s)	385, 671
BssECI	CCNNGG	2 cut(s)	141, 396
BssMI	GATC	1 cut(s)	697
BssT1I	CCWWGG	2 cut(s)	141, 396
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	1 cut(s)	174
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	502
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	1 cut(s)	700
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	697
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 579, 725
BstPI	GGTNACC	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	696
BsuRI	GGCC	2 cut(s)	146, 440
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	627
Cac8I	GCNNGC	1 cut(s)	502
CaiI	CAGNNNCTG	1 cut(s)	642
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	513, 618
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	8 cut(s)	114, 146, 349, 384, 440, 550, 561, 719
CviKI_1	RGCY	8 cut(s)	114, 146, 349, 384, 440, 550, 561, 719
CviQI	GTAC	2 cut(s)	513, 618
DpnI	GATC	1 cut(s)	699
DpnII	GATC	1 cut(s)	697
EaeI	YGGCCR	2 cut(s)	144, 438
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	141, 396
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	473
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	49
EcoO65I	GGTNACC	1 cut(s)	473
EcoRI	GAATTC	2 cut(s)	263, 281
EcoT14I	CCWWGG	2 cut(s)	141, 396
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	141, 396
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	1 cut(s)	145
FaiI	YATR	2 cut(s)	121, 143
FatI	CATG	1 cut(s)	141
FauI	CCCGC	2 cut(s)	60, 246
Fnu4HI	GCNGC	2 cut(s)	304, 438
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	304, 438
FspBI	CTAG	1 cut(s)	551
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	2 cut(s)	304, 438
HaeIII	GGCC	2 cut(s)	146, 440
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HphI	GGTGA	2 cut(s)	28, 485
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188III	TCNNGA	2 cut(s)	643, 652
Hpy8I	GTNNAC	1 cut(s)	664
Hpy99I	CGWCG	1 cut(s)	658
HpyAV	CCTTC	2 cut(s)	96, 724
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	573, 582, 625, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 579, 725
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	1 cut(s)	697
LmnI	GCTCC	3 cut(s)	111, 119, 164
Lsp1109I	GCAGC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	5 cut(s)	21, 136, 473, 530, 755
MalI	GATC	1 cut(s)	699
MboI	GATC	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	8 cut(s)	33, 65, 263, 281, 707, 739, 746, 769
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	5 cut(s)	186, 322, 464, 486, 693
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	5 cut(s)	318, 374, 387, 468, 772
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	443, 579, 725
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	697
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	51
NmeAIII	GCCGAG	1 cut(s)	695
NmuCI	GTSAC	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	305, 439
PpuMI	RGGWCCY	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	49
PspPPI	RGGWCCY	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	642
RsaI	GTAC	2 cut(s)	514, 619
RsaNI	GTAC	2 cut(s)	513, 618
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	5 cut(s)	318, 374, 387, 468, 772
SatI	GCNGC	2 cut(s)	304, 438
Sau3AI	GATC	1 cut(s)	697
Sau96I	GGNCC	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	8 cut(s)	116, 227, 280, 413, 497, 552, 641, 685
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	8 cut(s)	33, 65, 263, 281, 707, 739, 746, 769
SsiI	CCGC	5 cut(s)	53, 82, 239, 301, 437
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	141, 396
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	8, 653, 696
TaqII	GACCGA	2 cut(s)	275, 452
TasI	AATT	8 cut(s)	33, 65, 263, 281, 707, 739, 746, 769
TauI	GCSGC	1 cut(s)	440
Tru1I	TTAA	5 cut(s)	318, 374, 387, 468, 772
Tru9I	TTAA	5 cut(s)	318, 374, 387, 468, 772
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	7 cut(s)	78, 108, 114, 161, 560, 609, 720
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	4 cut(s)	65, 263, 281, 707
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.