Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Reverse (-)

17120004 .. 17125729

Gene Structure 5726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG181800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGGAGAAAAGGAGAGAGGAGACGAAGTGAAAGGGTACTGATTTCCAATCTAATACTAAAGGAGACAACTGATTTGAGAGAGAAGAAGAACATGGGGACGGGAAGAGCACGAACAAGGCAAATCTCGGTTCTCAGTCAACAGCGCCACTTCTATCTCGCCGTCGACAGACTCCAGTTCAAGATGGGAAAAGGATTGCCTTTTGGAGCTGCAAGAGGACTGTTAAACCTTCATGAGCAGTGTGACCTGAAAGTTATCCACAGGGATGTGAAGGCATCAAATGTACTTGATGACTACTGTGAAGCCGTAGTTGGAGATTTTGATTTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACCACTGCAGTGAGGGGTACCATAGGGCACATAGCTCCAGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

9.93

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	71 - 133	1.8e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	348
AfaI	GTAC	3 cut(s)	39, 285, 379
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	3 cut(s)	209, 334, 395
AluI	AGCT	3 cut(s)	209, 334, 395
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	16, 59
AlwI	GGATC	1 cut(s)	348
ApeKI	GCWGC	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	335, 352
BaeGI	GKGCMC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	178
BceAI	ACGGC	2 cut(s)	146, 290
BcoDI	GTCTC	2 cut(s)	16, 59
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	379
BmsI	GCATC	1 cut(s)	284
BpmI	CTGGAG	2 cut(s)	158, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	13, 43
Bse1I	ACTGG	2 cut(s)	175, 398
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	2 cut(s)	175, 398
BseRI	GAGGAG	2 cut(s)	19, 34
BseSI	GKGCMC	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	16, 59
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	112, 390
Bsp143I	GATC	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	379
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	175, 398
BssMI	GATC	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	222, 299
Bst6I	CTCTTC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	2 cut(s)	16, 59
BstMBI	GATC	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	3 cut(s)	245, 363, 375
BtsIMutI	CAGTG	3 cut(s)	245, 363, 375
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	38, 284, 378
CviAII	CATG	3 cut(s)	94, 233, 356
CviJI	RGCY	4 cut(s)	209, 305, 334, 395
CviKI_1	RGCY	4 cut(s)	209, 305, 334, 395
CviQI	GTAC	3 cut(s)	38, 284, 378
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	3 cut(s)	97, 236, 359
FaiI	YATR	5 cut(s)	95, 234, 357, 383, 392
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	93, 232, 355
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	210
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	2 cut(s)	158, 381
HaeII	RGCGCY	1 cut(s)	148
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	97, 236, 359
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	2 cut(s)	140, 166
HindII	GTYRAC	2 cut(s)	140, 166
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	2 cut(s)	171, 350
HphI	GGTGA	2 cut(s)	335, 352
Hpy166II	GTNNAC	2 cut(s)	140, 166
Hpy188I	TCNGA	1 cut(s)	407
Hpy188III	TCNNGA	2 cut(s)	181, 233
Hpy8I	GTNNAC	2 cut(s)	140, 166
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	239, 265
HpyCH4III	ACNGT	2 cut(s)	222, 299
HpyCH4V	TGCA	2 cut(s)	212, 368
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	97, 236, 359
HspAI	GCGC	1 cut(s)	145
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	340
LguI	GCTCTTC	1 cut(s)	100
LmnI	GCTCC	2 cut(s)	206, 400
LpnPI	CCDG	3 cut(s)	188, 247, 260
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	242, 358
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	97, 100, 117
MhlI	GDGCHC	2 cut(s)	112, 390
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	3 cut(s)	12, 209, 366
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	2 cut(s)	264, 368
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	3 cut(s)	97, 236, 359
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	2 cut(s)	242, 358
NspI	RCATGY	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	368
PagI	TCATGA	1 cut(s)	232
PciI	ACATGT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
PscI	ACATGT	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	39, 285, 379
RsaNI	GTAC	3 cut(s)	38, 284, 378
RseI	CAYNNNNRTG	2 cut(s)	264, 368
SalI	GTCGAC	1 cut(s)	164
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	112, 390
SetI	ASST	5 cut(s)	211, 231, 249, 336, 397
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	264, 368
TaaI	ACNGT	2 cut(s)	222, 299
TaqI	TCGA	1 cut(s)	165
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	3 cut(s)	245, 370, 375
TseFI	GTSAC	2 cut(s)	242, 358
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	242, 358
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	245, 370, 375
XceI	RCATGY	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.