Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

30537857 .. 30538851

Gene Structure 995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATGACATAAACGCTTGTCACATTTGTTTCAAGACGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCGTTTTGATAAGTTCAATCTGAAGTACAACCACTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCCGTTTCCTTGCTAAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGCACAGAATATCAAAATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTCTGCCACGGCTGTACAATATATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

122

Amino Acids

14.59

Weight (kDa)

8.42

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	11 - 122	1.8e-55	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	4 cut(s)	41, 119, 329, 356
AfiI	CCNNNNNNNGG	2 cut(s)	52, 163
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	34, 109
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	55, 292
AvaII	GGWCC	2 cut(s)	55, 292
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	2 cut(s)	168, 365
BfaI	CTAG	2 cut(s)	303, 367
BfrI	CTTAAG	1 cut(s)	158
BlpI	GCTNAGC	2 cut(s)	195, 249
Bme18I	GGWCC	2 cut(s)	55, 292
BmgT120I	GGNCC	2 cut(s)	55, 292
BmiI	GGNNCC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	2 cut(s)	195, 249
BsaJI	CCNNGG	2 cut(s)	178, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 163
Bse1I	ACTGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	178, 347
BseGI	GGATG	2 cut(s)	10, 70
BseLI	CCNNNNNNNGG	2 cut(s)	52, 163
BseMII	CTCAG	2 cut(s)	157, 240
BseNI	ACTGG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	255
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	52, 163
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	2 cut(s)	327, 354
Bsp143I	GATC	1 cut(s)	220
Bsp1720I	GCTNAGC	2 cut(s)	195, 249
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	156, 241
BspLI	GGNNCC	1 cut(s)	293
BspTI	CTTAAG	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	327, 354
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	178, 347
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	128, 332
BstAFI	CTTAAG	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	327, 354
BstDEI	CTNAG	3 cut(s)	143, 195, 249
BstDSI	CCRYGG	1 cut(s)	347
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	10, 70
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	10, 70
BtsIMutI	CAGTG	2 cut(s)	124, 337
Cfr13I	GGNCC	2 cut(s)	55, 292
Csp6I	GTAC	4 cut(s)	40, 118, 328, 355
CspCI	CAANNNNNGTGG	4 cut(s)	109, 144, 269, 304
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	142, 183, 199, 248, 302, 352
CviKI_1	RGCY	6 cut(s)	142, 183, 199, 248, 302, 352
CviQI	GTAC	4 cut(s)	40, 118, 328, 355
DdeI	CTNAG	3 cut(s)	143, 195, 249
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	55, 292
Eco57I	CTGAAG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	74
FaiI	YATR	5 cut(s)	11, 72, 270, 362, 364
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	70
FokI	GGATG	2 cut(s)	17, 77
FspBI	CTAG	2 cut(s)	303, 367
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	55, 316
Hpy188I	TCNGA	3 cut(s)	114, 220, 243
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	55, 316
HpyCH4III	ACNGT	2 cut(s)	128, 332
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	3 cut(s)	143, 195, 249
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	59, 130, 149, 244, 259
MaeI	CTAG	2 cut(s)	303, 367
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	287
MseI	TTAA	1 cut(s)	159
MspCI	CTTAAG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	20
Pfl23II	CGTACG	1 cut(s)	39
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	55, 292
RsaI	GTAC	4 cut(s)	41, 119, 329, 356
RsaNI	GTAC	4 cut(s)	40, 118, 328, 355
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	55, 292
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	4 cut(s)	41, 48, 60, 201
SinI	GGWCC	2 cut(s)	55, 292
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	323
SspMI	CTAG	2 cut(s)	303, 367
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	128, 332
TaiI	ACGT	1 cut(s)	41
TasI	AATT	1 cut(s)	323
TatI	WGTACW	3 cut(s)	117, 327, 354
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	131, 337
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	59, 80, 336
TspRI	CASTG	2 cut(s)	131, 337
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	55, 292
XagI	CCTNNNNNAGG	1 cut(s)	161
XspI	CTAG	2 cut(s)	303, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.