Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002320.1

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

54282 .. 55130

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002320.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgatgaaagaggaactgacaagaggaatggtgtttaggcaaggaacaagttttcctggttttccatttggttttggagttcagaagtatatttgtttcttgttttgctgggttgtgattttctttactgtgagtgacatattatgggttttgcatcactccaacagaaagacttctagtttacccatacatgtccagtggcttctcatctcagagggaaatggatcgccttttggagctgcaagaggacatgaatgtgacccgaaagttatccatagggatgtgaaggcagcaaatgtacttgatgactactgtgaagccgtagtcggagattttgatttggcaaagcttttgaatcaccaagattcacatgtcaccactgcagtgaggggtaccataggacacatagctccagtcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

15.66

Weight (kDa)

6.69

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	392
AclWI	GGATC	1 cut(s)	232
AfaI	GTAC	2 cut(s)	300, 394
AflIII	ACRYGT	2 cut(s)	190, 370
AgsI	TTSAA	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	383
AloI	GAACNNNNNNTCC	2 cut(s)	37, 69
AluBI	AGCT	3 cut(s)	239, 349, 410
AluI	AGCT	3 cut(s)	239, 349, 410
AlwI	GGATC	1 cut(s)	232
ApeKI	GCWGC	2 cut(s)	239, 290
Asp700I	GAANNNNTTC	1 cut(s)	172
Asp718I	GGTACC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	350, 367
BanI	GGYRCC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	226, 302
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	2 cut(s)	240, 291
BlsI	GCNGC	2 cut(s)	241, 292
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	196, 413
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	196, 413
BseXI	GCAGC	2 cut(s)	226, 302
BseYI	CCCAGC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	196, 413
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	130, 314
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	194, 374
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	226, 302
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	2 cut(s)	378, 390
BtsIMutI	CAGTG	3 cut(s)	203, 378, 390
Csp6I	GTAC	2 cut(s)	299, 393
CviAII	CATG	3 cut(s)	191, 251, 371
CviJI	RGCY	5 cut(s)	202, 239, 320, 349, 410
CviKI_1	RGCY	5 cut(s)	202, 239, 320, 349, 410
CviQI	GTAC	2 cut(s)	299, 393
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	194, 254, 374
FatI	CATG	3 cut(s)	190, 250, 370
Fnu4HI	GCNGC	2 cut(s)	240, 291
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	240, 291
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	2 cut(s)	240, 291
GsaI	CCCAGC	1 cut(s)	112
GsuI	CTGGAG	1 cut(s)	396
Hin1II	CATG	3 cut(s)	194, 254, 374
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	2 cut(s)	355, 365
HphI	GGTGA	2 cut(s)	350, 367
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	4 cut(s)	84, 214, 329, 422
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	130, 314
HpyCH4V	TGCA	3 cut(s)	154, 242, 383
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	194, 254, 374
KpnI	GGTACC	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	236, 415
LpnPI	CCDG	4 cut(s)	42, 69, 94, 209
Lsp1109I	GCAGC	2 cut(s)	226, 302
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	134, 257, 373
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	186, 307
MnlI	CCTC	5 cut(s)	4, 17, 208, 239, 381
MroXI	GAANNNNTTC	1 cut(s)	172
MslI	CAYNNNNRTG	3 cut(s)	255, 279, 383
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	3 cut(s)	194, 254, 374
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	3 cut(s)	134, 257, 373
NspI	RCATGY	2 cut(s)	194, 374
OliI	CACNNNNGTG	1 cut(s)	383
PciI	ACATGT	2 cut(s)	190, 370
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	355, 365
PkrI	GCNGC	2 cut(s)	241, 292
PscI	ACATGT	2 cut(s)	190, 370
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	300, 394
RsaNI	GTAC	2 cut(s)	299, 393
RseI	CAYNNNNRTG	3 cut(s)	255, 279, 383
SatI	GCNGC	2 cut(s)	240, 291
Sau3AI	GATC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	3 cut(s)	241, 351, 412
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	3 cut(s)	255, 279, 383
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	130, 314
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	355, 365
TscAI	CASTG	3 cut(s)	203, 385, 390
TseFI	GTSAC	3 cut(s)	134, 257, 373
TseI	GCWGC	2 cut(s)	239, 290
Tsp45I	GTSAC	3 cut(s)	134, 257, 373
TspDTI	ATGAA	2 cut(s)	20, 267
TspRI	CASTG	3 cut(s)	203, 385, 390
XceI	RCATGY	2 cut(s)	194, 374
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.