Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

84379072 .. 84386476

Gene Structure 7405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036777

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCAGACTCCAAGTTCAAGAATAAAGTCATGTTATTACACCAGATTTGCAGTCTTCATAATTTACTATATTGTATCTTATGCAGTGGAGCTTATTTCCTGGAGGTCTACACCCTAGTGAGGAAGGGTGATCTCTTGATTGTGAGAGGAGGAATGAGGAGTGTCGAGTTCAAGATGGCTGAGTACAGAATATCAATATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGGTTTAGGATTCTGTAAAAATCTTGAATTCTTATTATGCAATTTTTGTCTTCTTTCAGCTGCCACGGCTGTACAATATATACAAGGAAATGGGATAGTCACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTGTTTGAGGTTACCATAAATCCAGATTCCCACCTGCAGTTGCATGTTTTTCTGAAACAGACTCCTAATATGCAGTTTCAGGCTTTGATTTACTACCTAATAGATCTAAGTGAATTGCAGATGGTTTTAGTTTTGGCTACTAGGTATATAACAGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

181

Amino Acids

20.75

Weight (kDa)

6.88

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	52 - 147	2.9e-24	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	423
Acc36I	ACCTGC	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	2 cut(s)	185, 315
AfiI	CCNNNNNNNGG	1 cut(s)	120
AgsI	TTSAA	3 cut(s)	19, 172, 269
AjnI	CCWGG	1 cut(s)	99
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	2 cut(s)	92, 302
AluI	AGCT	2 cut(s)	92, 302
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	47, 284
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	169, 496
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	3 cut(s)	116, 234, 522
BfmI	CTRYAG	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	423
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	47, 284
BpmI	CTGGAG	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	162, 172
BseXI	GCAGC	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	130, 484
BspACI	CCGC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	420
BspMI	ACCTGC	1 cut(s)	423
BsrGI	TGTACA	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	130, 484
Bst2UI	CCWGG	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	180, 488
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	133, 487
BstMBI	GATC	2 cut(s)	130, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	428
BstPI	GGTNACC	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	2 cut(s)	47, 284
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	184, 314
CspCI	CAANNNNNGTGG	2 cut(s)	200, 235
CviAII	CATG	2 cut(s)	31, 425
CviJI	RGCY	7 cut(s)	92, 179, 233, 302, 311, 464, 518
CviKI_1	RGCY	7 cut(s)	92, 179, 233, 302, 311, 464, 518
CviQI	GTAC	2 cut(s)	184, 314
DdeI	CTNAG	2 cut(s)	180, 488
DpnI	GATC	2 cut(s)	132, 486
DpnII	GATC	2 cut(s)	130, 484
Eco47I	GGWCC	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	34, 428
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	30, 424
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	303
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	3 cut(s)	116, 234, 522
GluI	GCNGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	34, 428
HinfI	GANTC	4 cut(s)	8, 252, 407, 442
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	7, 354, 435
Hpy188III	TCNNGA	6 cut(s)	19, 136, 172, 266, 362, 404
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	118
HpyCH4V	TGCA	7 cut(s)	51, 84, 282, 418, 424, 454, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	2 cut(s)	180, 488
Hsp92II	CATG	2 cut(s)	34, 428
Kzo9I	GATC	2 cut(s)	130, 484
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	56, 86, 113, 190, 417, 428, 446
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	116, 234, 522
MaeIII	GTNAC	2 cut(s)	340, 391
MalI	GATC	2 cut(s)	132, 486
MboI	GATC	2 cut(s)	130, 484
MboII	GAAGA	2 cut(s)	47, 284
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	4 cut(s)	61, 269, 283, 494
MlyI	GAGTC	2 cut(s)	2, 436
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	6 cut(s)	97, 114, 140, 143, 150, 382
MseI	TTAA	1 cut(s)	541
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	302, 382
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	308
NdeII	GATC	2 cut(s)	130, 484
NlaIII	CATG	2 cut(s)	34, 428
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	1 cut(s)	428
OliI	CACNNNNGTG	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	252, 407
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	304
PleI	GAGTC	2 cut(s)	2, 436
PpsI	GAGTC	2 cut(s)	2, 436
Psp6I	CCWGG	1 cut(s)	99
PspEI	GGTNACC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	185, 315
RsaNI	GTAC	2 cut(s)	184, 314
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	541
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	130, 484
Sau96I	GGNCC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	2, 436
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	9 cut(s)	94, 108, 247, 304, 393, 417, 480, 527, 541
SfcI	CTRYAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	4 cut(s)	61, 269, 283, 494
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	3 cut(s)	116, 234, 522
StyD4I	CCNGG	1 cut(s)	99
TaqI	TCGA	1 cut(s)	165
TasI	AATT	4 cut(s)	61, 269, 283, 494
TatI	WGTACW	2 cut(s)	183, 313
TfiI	GAWTC	2 cut(s)	252, 407
Tru1I	TTAA	1 cut(s)	541
Tru9I	TTAA	1 cut(s)	541
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	428
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	3 cut(s)	116, 234, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.