Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

71050501 .. 71054558

Gene Structure 4058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG411000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATGACATAAACACTTGTCACATTTGTTTCAAGAGGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCGTTTTGATAAGTTCAATCTGAAGTACAACCACTGTGGTCAAAGTAGGCTCGGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGGGCACAGAATATCAAAATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTCTGCCACCACTGTACAATATATACCAGGAAATGGGGATAGTCACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTGTTTGAGGTTACCATAAATCCAGATTCCCACCCGCAGTTGCAGGTTTTTCTGAAACAGGGAAACGGATTGCCTTTTGGAGCTGCAAGAGGACTGTTATACCTTCATGAGCAGTGTGACCTGAAAGTTATCCACAAGGATGTGAAGGCATCAAATGTACTTGATGACTACTGTGAAGCTGTAGTCGGAGATTTTGATTTGGCAAAGCTTTTGGATCACCAAGATTCACATATCACCACTGCAGTGGTACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

225

Amino Acids

25.87

Weight (kDa)

5.62

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	11 - 164	6.1e-73	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
Acc65I	GGTACC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	2 cut(s)	422, 458
AclWI	GGATC	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	6 cut(s)	41, 119, 329, 356, 582, 672
AfiI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	34, 109
AjnI	CCWGG	1 cut(s)	366
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	4 cut(s)	199, 506, 602, 631
AluI	AGCT	4 cut(s)	199, 506, 602, 631
AlwI	GGATC	1 cut(s)	645
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	506
Asp718I	GGTACC	1 cut(s)	670
AspS9I	GGNCC	2 cut(s)	55, 292
AsuHPI	GGTGA	2 cut(s)	632, 649
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	55, 292
BaeGI	GKGCMC	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	670
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	368
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	2 cut(s)	603, 663
BfrI	CTTAAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	1 cut(s)	507
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	55, 292
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	55, 292
BmiI	GGNNCC	2 cut(s)	293, 672
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	581
Bpu1102I	GCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 163, 373
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	3 cut(s)	10, 70, 568
BseLI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	493
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	670
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	2 cut(s)	327, 354
Bsp143I	GATC	2 cut(s)	220, 637
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	2 cut(s)	422, 458
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	293, 672
BspMAI	CTGCAG	1 cut(s)	667
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	645
BspT107I	GGYRCC	1 cut(s)	670
BspTI	CTTAAG	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	327, 354
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	220, 637
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	5 cut(s)	128, 332, 354, 519, 596
BstAFI	CTTAAG	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	327, 354
BstDEI	CTNAG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	10, 70, 568
BstKTI	GATC	2 cut(s)	223, 640
BstMBI	GATC	2 cut(s)	220, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	603, 663
BstSLI	GKGCMC	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	493
BstXI	CCANNNNNNTGG	1 cut(s)	667
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	10, 70, 568
BtsI	GCAGTG	3 cut(s)	542, 660, 672
BtsIMutI	CAGTG	6 cut(s)	124, 337, 350, 542, 660, 672
BveI	ACCTGC	1 cut(s)	457
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	55, 292
Csp6I	GTAC	6 cut(s)	40, 118, 328, 355, 581, 671
CspCI	CAANNNNNGTGG	4 cut(s)	109, 144, 269, 304
CviAII	CATG	2 cut(s)	71, 530
CviJI	RGCY	8 cut(s)	142, 183, 199, 248, 302, 506, 602, 631
CviKI_1	RGCY	8 cut(s)	142, 183, 199, 248, 302, 506, 602, 631
CviQI	GTAC	6 cut(s)	40, 118, 328, 355, 581, 671
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	222, 639
DpnII	GATC	2 cut(s)	220, 637
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	55, 292
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	2 cut(s)	74, 533
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	70, 529
FauI	CCCGC	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	3 cut(s)	17, 77, 575
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	507
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	74, 533
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	2 cut(s)	449, 647
HphI	GGTGA	2 cut(s)	632, 649
Hpy166II	GTNNAC	2 cut(s)	55, 316
Hpy188I	TCNGA	6 cut(s)	114, 220, 243, 396, 477, 611
Hpy188III	TCNNGA	4 cut(s)	34, 404, 446, 530
Hpy8I	GTNNAC	2 cut(s)	55, 316
HpyAV	CCTTC	2 cut(s)	536, 562
HpyCH4III	ACNGT	5 cut(s)	128, 332, 354, 519, 596
HpyCH4V	TGCA	4 cut(s)	74, 466, 509, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	74, 533
KpnI	GGTACC	1 cut(s)	674
Kzo9I	GATC	2 cut(s)	220, 637
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	4 cut(s)	20, 382, 433, 539
MalI	GATC	2 cut(s)	222, 639
MboI	GATC	2 cut(s)	220, 637
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	323
MmeI	TCCRAC	2 cut(s)	287, 589
MnlI	CCTC	3 cut(s)	30, 424, 506
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	2 cut(s)	561, 665
MspA1I	CMGCKG	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	2 cut(s)	220, 637
NlaIII	CATG	2 cut(s)	74, 533
NlaIV	GGNNCC	2 cut(s)	293, 672
NmuCI	GTSAC	3 cut(s)	20, 382, 539
OliI	CACNNNNGTG	1 cut(s)	665
PagI	TCATGA	1 cut(s)	529
PfeI	GAWTC	2 cut(s)	449, 647
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	508
Psp6I	CCWGG	1 cut(s)	366
PspEI	GGTNACC	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	293, 672
PspPI	GGNCC	2 cut(s)	55, 292
PstI	CTGCAG	1 cut(s)	667
RsaI	GTAC	6 cut(s)	41, 119, 329, 356, 582, 672
RsaNI	GTAC	6 cut(s)	40, 118, 328, 355, 581, 671
RseI	CAYNNNNRTG	2 cut(s)	561, 665
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	2 cut(s)	220, 637
Sau96I	GGNCC	2 cut(s)	55, 292
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	581
SfcI	CTRYAG	2 cut(s)	603, 663
SinI	GGWCC	2 cut(s)	55, 292
SmiMI	CAYNNNNRTG	2 cut(s)	561, 665
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	2 cut(s)	422, 458
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	5 cut(s)	128, 332, 354, 519, 596
TasI	AATT	1 cut(s)	323
TatI	WGTACW	4 cut(s)	117, 327, 354, 580
TfiI	GAWTC	2 cut(s)	449, 647
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	6 cut(s)	131, 337, 357, 542, 667, 672
TseFI	GTSAC	3 cut(s)	20, 382, 539
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	3 cut(s)	20, 382, 539
TspDTI	ATGAA	4 cut(s)	59, 80, 336, 518
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	6 cut(s)	131, 337, 357, 542, 667, 672
Van91I	CCANNNNNTGG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	55, 292
XagI	CCTNNNNNAGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.