Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Reverse (-)

54278386 .. 54280237

Gene Structure 1852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0422300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGATAACAAGAAATCCTCTTCAAGTGCTTTGATAGCATTACCTTCGCCAATTGAAGAAGATGAAATTGAATGGAAGAAGAGCTTACCATCTGGAGTGAAGTTTCGGCCCTCACATAAAGATTTATATCATTATCTCCATATGAAGGTTCATACTGGGCGCATTGATTTTGGTGGAGTTATTAGAAGCATCAATCTTTATATATATAAGCCCGAGGACCTAAGAGGTTTAGCATTTGATAATGATGATGGCCGCTTGTACTTCTTCACACCATTGCAAAAGAAGTTCACAAAGGGAAAAAAGACAAACAGAGTAACCGGACATGGTTTTTGGAAGGTCACGCAGAAGTCTGTAAAGATTATGGACGATGACAACAAGCCTATTATGACCAAAACACCTCTGTGTTACTTTTACTTTTGGGGCAAAAAGGGAAGGAAAACTCAGTGGCTCATGGACCAGTACAAGCTCATCAACGAGGGCAGTAATCCTGTAATGTTGAAGAATTGGGTTCTTTGTGTTGTCCACTATAAGCCAAGAGGGAATAATGATACAAACAAAAGAAGCAGCACTGATTCAAGGTCCGAGGCAGTGGGATCTTCTACTCAAAACTCGATGATAGGTTCGTCTTCCGAATCCAATCCCCAAATTTCCTTTGGCAACAATAACTTCAATGTGGCTTCATCTTCTAACCCACAAGGTACTAGTTCATACCCAGAACCGGTGGCATTCCAGACTCCTAGTAACCCAAATAAGAGACAGCAGTGTTCTACTTCTTATGATGAGCCTTTGTGTATCACCTGCCCTGGTAATAACATTGCCTCTTATGCCCAATTTCCTAAACGTAGATCACCTAGTGCTAATGACACCCCCAACATTGATCAAAACCAAGCTAGTGACCCTTCTTTTGATCAAATGGTTTCTAACGTACTCAACCAGGATCCTGATGAATACACGTGTCTAGAGCCATTACTCAACCTAGATATAGGCGATTACGAGTGGAAAGACGATATTTTTAATGTTCTTTTTCCATCTGAACTTAATCCTCAAAATAGTAACCCTAATAGCATGAACCCTACAACTACTACTACTAGTCATCCTACTGTCTCTGCCTCAGATCCACCTCCTCCCACCTTCAACTCTTCTGCCGATGAAAATGCCAGGATAGCATCTATGGCAAAAGTGGGTCAATCCAATGCCACAACAAGCTTATCGATCACTAAGGAAGGGAAGACAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

412

Amino Acids

46.09

Weight (kDa)

8.35

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	30 - 156	1.4e-23	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	806
Acc36I	ACCTGC	1 cut(s)	806
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	4 cut(s)	601, 932, 945, 1109
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	645
AcvI	CACGTG	1 cut(s)	954
AdeI	CACNNNGTG	1 cut(s)	854
AfaI	GTAC	4 cut(s)	260, 461, 700, 927
AfiI	CCNNNNNNNGG	2 cut(s)	145, 718
AflIII	ACRYGT	2 cut(s)	951, 953
AgeI	ACCGGT	1 cut(s)	718
AgsI	TTSAA	7 cut(s)	24, 56, 71, 499, 576, 670, 1135
AhlI	ACTAGT	2 cut(s)	701, 1088
AjnI	CCWGG	3 cut(s)	802, 933, 1157
AleI	CACNNNNGTG	1 cut(s)	400
AluBI	AGCT	4 cut(s)	84, 466, 890, 1206
AluI	AGCT	4 cut(s)	84, 466, 890, 1206
Alw26I	GTCTC	2 cut(s)	748, 1108
AlwI	GGATC	4 cut(s)	601, 932, 945, 1109
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	107, 250
ApeKI	GCWGC	1 cut(s)	564
ApoI	RAATTY	1 cut(s)	645
ArsI	GACNNNNNNTTYG	4 cut(s)	312, 344, 887, 919
AsiGI	ACCGGT	1 cut(s)	718
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	4 cut(s)	108, 217, 454, 579
AsuHPI	GGTGA	2 cut(s)	787, 840
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	217, 454, 579
BamHI	GGATCC	1 cut(s)	937
BbrPI	CACGTG	1 cut(s)	954
BbsI	GAAGAC	2 cut(s)	618, 1235
BbvI	GCAGC	1 cut(s)	576
BccI	CCATC	3 cut(s)	97, 242, 1036
BcgI	CGANNNNNNTGC	4 cut(s)	27, 61, 1136, 1170
BciT130I	CCWGG	3 cut(s)	804, 935, 1159
BclI	TGATCA	2 cut(s)	877, 907
BcoDI	GTCTC	2 cut(s)	748, 1108
BcuI	ACTAGT	2 cut(s)	701, 1088
BfaI	CTAG	7 cut(s)	702, 738, 852, 891, 959, 977, 1089
BfuAI	ACCTGC	1 cut(s)	806
BisI	GCNGC	2 cut(s)	253, 565
BlsI	GCNGC	2 cut(s)	254, 566
Bme1390I	CCNGG	3 cut(s)	804, 935, 1159
Bme18I	GGWCC	3 cut(s)	217, 454, 579
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	4 cut(s)	108, 217, 454, 579
BmiI	GGNNCC	1 cut(s)	939
BmrFI	CCNGG	3 cut(s)	804, 935, 1159
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	2 cut(s)	198, 1175
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	618, 1235
BpmI	CTGGAG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	1211
BsaAI	YACGTR	1 cut(s)	954
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	213, 582, 802
BsaWI	WCCGGW	2 cut(s)	317, 718
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 718
Bse118I	RCCGGY	1 cut(s)	718
Bse1I	ACTGG	2 cut(s)	160, 457
Bse3DI	GCAATG	2 cut(s)	272, 813
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	3 cut(s)	804, 935, 1159
BseCI	ATCGAT	1 cut(s)	1211
BseDI	CCNNGG	3 cut(s)	213, 582, 802
BseGI	GGATG	1 cut(s)	1093
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	145, 718
BseMI	GCAATG	2 cut(s)	272, 813
BseMII	CTCAG	2 cut(s)	455, 1125
BseNI	ACTGG	2 cut(s)	160, 457
BseRI	GAGGAG	1 cut(s)	1113
BseXI	GCAGC	1 cut(s)	576
BshFI	GGCC	2 cut(s)	109, 252
BshTI	ACCGGT	1 cut(s)	718
BshVI	ATCGAT	1 cut(s)	1211
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	318, 719
BslI	CCNNNNNNNGG	2 cut(s)	145, 718
BsmAI	GTCTC	2 cut(s)	748, 1108
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	2 cut(s)	109, 252
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	2 cut(s)	109, 252
BspCNI	CTCAG	2 cut(s)	454, 1124
BspDI	ATCGAT	1 cut(s)	1211
BspLI	GGNNCC	1 cut(s)	939
BspMI	ACCTGC	1 cut(s)	806
BspPI	GGATC	4 cut(s)	601, 932, 945, 1109
BspQI	GCTCTTC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	272, 813
BsrFI	RCCGGY	1 cut(s)	718
BsrI	ACTGG	2 cut(s)	160, 457
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	3 cut(s)	213, 582, 802
BssMI	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
Bst2UI	CCWGG	3 cut(s)	804, 935, 1159
Bst4CI	ACNGT	1 cut(s)	1102
Bst6I	CTCTTC	3 cut(s)	25, 74, 1144
BstBAI	YACGTR	1 cut(s)	954
BstDEI	CTNAG	4 cut(s)	221, 441, 1111, 1218
BstF5I	GGATG	1 cut(s)	1093
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	7 cut(s)	596, 848, 880, 910, 940, 1117, 1215
BstMAI	GTCTC	2 cut(s)	748, 1108
BstMBI	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 824, 1163, 1172
BstNI	CCWGG	3 cut(s)	804, 935, 1159
BstSCI	CCNGG	3 cut(s)	802, 933, 1157
BstV1I	GCAGC	1 cut(s)	576
BstV2I	GAAGAC	2 cut(s)	618, 1235
BstX2I	RGATCY	3 cut(s)	593, 937, 1114
BstYI	RGATCY	3 cut(s)	593, 937, 1114
Bsu15I	ATCGAT	1 cut(s)	1211
BsuRI	GGCC	2 cut(s)	109, 252
BsuTUI	ATCGAT	1 cut(s)	1211
BtsCI	GGATG	1 cut(s)	1093
BtsI	GCAGTG	2 cut(s)	594, 767
BtsIMutI	CAGTG	4 cut(s)	449, 567, 594, 767
BveI	ACCTGC	1 cut(s)	806
CfoI	GCGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	4 cut(s)	108, 217, 454, 579
ClaI	ATCGAT	1 cut(s)	1211
Csp6I	GTAC	4 cut(s)	259, 460, 699, 926
CspAI	ACCGGT	1 cut(s)	718
CviAII	CATG	3 cut(s)	323, 451, 1066
CviQI	GTAC	4 cut(s)	259, 460, 699, 926
DdeI	CTNAG	4 cut(s)	221, 441, 1111, 1218
DpnI	GATC	7 cut(s)	595, 847, 879, 909, 939, 1116, 1214
DpnII	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
DraIII	CACNNNGTG	1 cut(s)	854
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	3 cut(s)	25, 74, 1144
EarI	CTCTTC	3 cut(s)	25, 74, 1144
Eco47I	GGWCC	3 cut(s)	217, 454, 579
Eco72I	CACGTG	1 cut(s)	954
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	3 cut(s)	802, 933, 1157
FaeI	CATG	3 cut(s)	326, 454, 1069
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	3 cut(s)	322, 450, 1065
FauNDI	CATATG	1 cut(s)	141
FbaI	TGATCA	2 cut(s)	877, 907
Fnu4HI	GCNGC	2 cut(s)	253, 565
FokI	GGATG	1 cut(s)	1080
Fsp4HI	GCNGC	2 cut(s)	253, 565
FspBI	CTAG	7 cut(s)	702, 738, 852, 891, 959, 977, 1089
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	253, 565
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	109, 252
HapII	CCGG	2 cut(s)	318, 719
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	326, 454, 1069
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	1204
HinfI	GANTC	3 cut(s)	572, 632, 733
HpaII	CCGG	2 cut(s)	318, 719
HphI	GGTGA	2 cut(s)	787, 840
Hpy166II	GTNNAC	2 cut(s)	288, 523
Hpy188I	TCNGA	4 cut(s)	583, 631, 1033, 1114
Hpy188III	TCNNGA	4 cut(s)	93, 730, 941, 959
Hpy8I	GTNNAC	2 cut(s)	288, 523
HpyAV	CCTTC	7 cut(s)	54, 139, 328, 426, 909, 1141, 1217
HpyCH4III	ACNGT	1 cut(s)	1102
HpyCH4IV	ACGT	3 cut(s)	841, 924, 953
HpyCH4V	TGCA	1 cut(s)	277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 824, 1163, 1172
HpyF3I	CTNAG	4 cut(s)	221, 441, 1111, 1218
HpySE526I	ACGT	3 cut(s)	841, 924, 953
Hsp92II	CATG	3 cut(s)	326, 454, 1069
HspAI	GCGC	1 cut(s)	160
Ksp22I	TGATCA	2 cut(s)	877, 907
Kzo9I	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
LguI	GCTCTTC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	576
LweI	GCATC	2 cut(s)	198, 1175
MaeI	CTAG	7 cut(s)	702, 738, 852, 891, 959, 977, 1089
MaeII	ACGT	3 cut(s)	841, 924, 953
MaeIII	GTNAC	6 cut(s)	313, 337, 404, 740, 893, 1052
MalI	GATC	7 cut(s)	595, 847, 879, 909, 939, 1116, 1214
MboI	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	3 cut(s)	593, 937, 1114
MluCI	AATT	5 cut(s)	51, 66, 502, 645, 830
MlyI	GAGTC	1 cut(s)	727
MseI	TTAA	2 cut(s)	1014, 1038
MslI	CAYNNNNRTG	1 cut(s)	400
MspI	CCGG	2 cut(s)	318, 719
MspR9I	CCNGG	3 cut(s)	804, 935, 1159
MunI	CAATTG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	3 cut(s)	804, 935, 1159
MwoI	GCNNNNNNNGC	4 cut(s)	35, 824, 1163, 1172
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
NlaIII	CATG	3 cut(s)	326, 454, 1069
NlaIV	GGNNCC	1 cut(s)	939
NmuCI	GTSAC	2 cut(s)	337, 893
OliI	CACNNNNGTG	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	806
PciSI	GCTCTTC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	725
PfeI	GAWTC	2 cut(s)	572, 632
PinAI	ACCGGT	1 cut(s)	718
PkrI	GCNGC	2 cut(s)	254, 566
PleI	GAGTC	1 cut(s)	727
PmaCI	CACGTG	1 cut(s)	954
PmlI	CACGTG	1 cut(s)	954
PpsI	GAGTC	1 cut(s)	727
Ppu21I	YACGTR	1 cut(s)	954
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	3 cut(s)	802, 933, 1157
PspCI	CACGTG	1 cut(s)	954
PspGI	CCWGG	3 cut(s)	802, 933, 1157
PspN4I	GGNNCC	1 cut(s)	939
PspPI	GGNCC	4 cut(s)	108, 217, 454, 579
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	3 cut(s)	593, 937, 1114
RsaI	GTAC	4 cut(s)	260, 461, 700, 927
RsaNI	GTAC	4 cut(s)	259, 460, 699, 926
RseI	CAYNNNNRTG	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	1014, 1038
SatI	GCNGC	2 cut(s)	253, 565
Sau3AI	GATC	7 cut(s)	593, 845, 877, 907, 937, 1114, 1212
Sau96I	GGNCC	4 cut(s)	108, 217, 454, 579
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	3 cut(s)	804, 935, 1159
SfaNI	GCATC	2 cut(s)	198, 1175
SinI	GGWCC	3 cut(s)	217, 454, 579
SmiMI	CAYNNNNRTG	1 cut(s)	400
SpeI	ACTAGT	2 cut(s)	701, 1088
Sse9I	AATT	5 cut(s)	51, 66, 502, 645, 830
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	7 cut(s)	702, 738, 852, 891, 959, 977, 1089
StyD4I	CCNGG	3 cut(s)	802, 933, 1157
TaaI	ACNGT	1 cut(s)	1102
TaiI	ACGT	3 cut(s)	844, 927, 956
TaqI	TCGA	2 cut(s)	611, 1211
TasI	AATT	5 cut(s)	51, 66, 502, 645, 830
TatI	WGTACW	2 cut(s)	258, 459
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	572, 632
Tru1I	TTAA	2 cut(s)	1014, 1038
Tru9I	TTAA	2 cut(s)	1014, 1038
TscAI	CASTG	4 cut(s)	449, 574, 594, 767
TseFI	GTSAC	2 cut(s)	337, 893
TseI	GCWGC	1 cut(s)	564
Tsp45I	GTSAC	2 cut(s)	337, 893
TspDTI	ATGAA	8 cut(s)	78, 140, 158, 669, 696, 960, 1082, 1164
TspRI	CASTG	4 cut(s)	449, 574, 594, 767
VpaK11BI	GGWCC	3 cut(s)	217, 454, 579
XapI	RAATTY	1 cut(s)	645
XbaI	TCTAGA	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XspI	CTAG	7 cut(s)	702, 738, 852, 891, 959, 977, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.