Rorug01G0411000

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002368
Physical Location & Seq
Forward (+)
51611658 .. 51614450
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0411000.1

Sequence Viewer

Length: 1236 bp
ATGAGTTCAACAGTTTCGACACCTAGAGGGATACTGTCACCCACTAGGCTTGGCTCGTACGGGTCGCCTGATGCCGGGTCGTCTGGTTCTTTTACCCCGCTTGAATCGGACTTCAGTGATGGTGACGAGACTGAGTTGCACTCTGTGTCCTGGAATCAGGACTATGGTTGCTTTGCGGCAGGCACAAGTAATGGTTTTCGTATCTATAACTGTGAGCCTTTCAAGGAGACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAAAATTGTTGAGATGTTGTTCAGATGCAACATTCTTGTACTTGTTGGTGGTGGAGACAATTCCCAATATCCACCCAACAAAGTTATGATTTGGGATGATCATCAGAGCCGATGTATTGGTGAATTTTCATTCAGGTCTGAGATTCGTGCAGTAAAGTTGAGACGTGATCGCATAGTTGTGGTTCTTGAGCACAAGATATATGTTTACAGCTTCATGGATCTAAAGCTGCTGCATCAGATAGAAACTTTATCAAATCCCAGGGGATTGTGTTGCCTTTCACACCATCAAAATACATCTGTGCTGGCTTGCCCAGGCCTTCAGCGGGGACAAGTTCGAATCGAACATTTTGGGCTGATTATGACAAAGTTAATCAATGCTCATGATTCTCATATTGCATGCTTCACCTTAACAATGGATGGGCTGCTTCTTGCAACTGCTAGTACCAAGGGTACTTTAATAAGAATCTTCAACACGATGGATGGGACTCGCTTACAAGAGGTACGCAGAGGTGTGGACAGAGCAGACATCTATAGTATTGCCCTCTCTCCAAATGTTCAGTGGTTGGCAGCATCAAGTGACAAAGGTACTGTGCATATATTCAGCCTCAGAGTTAGAGGGGTTGGAATGGATTTATCTACTCATTCGAATGCTGCTCAAGGGCCATCACTTTTTCAACAGAATTCTTCAAATTCCCTAGAGCCTCTTATTTCTCCAAACACTGGAGCCAATTCGAGTTCATCATTGTCTTTCATGAAAGGGGTTTTACCTAAATATTTTAGCTCAGAGTGGTCTTTTGCTCAGTTCCACTTGCCAGAAGATACACAATTCATTACTGCATTTGGTTCTCAAAACAGTGTCATCATTGTTGGCCTGGATGGGAGCTTCTACAGGTGCAGTTTTGATCCAGTGAATGGAGGTGAGATGTTGCAGCAGGAATATGTACGGTTTCTGAAAACAGACAGTAGACCAAGATAG

Protein Analysis

411

Amino Acids

45.59

Weight (kDa)

7.18

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 44 - 296 4.7e-13 THOC3 beta-propeller domain
PROPPIN PF21032 47 - 290 2.9e-36 PROPPIN
WD40_CDC20-Fz PF24807 142 - 304 2.2e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 211 - 304 5.3e-08 WDR5 beta-propeller domain
WD40_Prp19 PF24814 213 - 302 1.1e-07 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 980, 1172
AccI GTMKAC 1 cut(s) 1225
AciI CCGC 3 cut(s) 98, 176, 583
AclWI GGATC 2 cut(s) 486, 1157
AcsI RAATTY 3 cut(s) 383, 940, 949
AcuI CTGAAG 2 cut(s) 97, 563
AdeI CACNNNGTG 1 cut(s) 145
AfaI GTAC 7 cut(s) 59, 300, 703, 712, 762, 847, 1203
AfiI CCNNNNNNNGG 4 cut(s) 74, 583, 980, 1172
AgsI TTSAA 7 cut(s) 9, 104, 223, 247, 730, 935, 948
AjiI CACGTC 2 cut(s) 239, 425
AjnI CCWGG 4 cut(s) 149, 518, 571, 1131
AluBI AGCT 4 cut(s) 471, 487, 1041, 1143
AluI AGCT 4 cut(s) 471, 487, 1041, 1143
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 4 cut(s) 122, 221, 309, 415
AlwI GGATC 2 cut(s) 486, 1157
AoxI GGCC 3 cut(s) 574, 920, 1129
ApeKI GCWGC 6 cut(s) 487, 490, 682, 827, 911, 1189
ApoI RAATTY 3 cut(s) 383, 940, 949
AspS9I GGNCC 1 cut(s) 920
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 5 cut(s) 30, 134, 392, 655, 1190
AsuII TTCGAA 2 cut(s) 595, 905
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 6 cut(s) 474, 477, 669, 839, 898, 1201
BccI CCATC 7 cut(s) 113, 552, 671, 730, 734, 931, 1130
BciT130I CCWGG 4 cut(s) 151, 520, 573, 1133
BciVI GTATCC 1 cut(s) 24
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 4 cut(s) 122, 221, 309, 415
BfaI CTAG 4 cut(s) 24, 45, 699, 956
BfmI CTRYAG 2 cut(s) 790, 1147
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 7 cut(s) 177, 488, 491, 683, 828, 912, 1190
BlsI GCNGC 7 cut(s) 178, 489, 492, 684, 829, 913, 1191
Bme1390I CCNGG 5 cut(s) 76, 151, 520, 573, 1133
BmgBI CACGTC 2 cut(s) 239, 425
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 1 cut(s) 985
BmrFI CCNGG 5 cut(s) 76, 151, 520, 573, 1133
BmsI GCATC 4 cut(s) 61, 275, 502, 839
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 1 cut(s) 1002
Bpu14I TTCGAA 2 cut(s) 595, 905
BpuEI CTTGAG 2 cut(s) 467, 900
BpuMI CCSGG 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 518, 519, 571, 705
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 583, 980, 1172
Bse1I ACTGG 2 cut(s) 985, 1166
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 4 cut(s) 151, 520, 573, 1133
BseDI CCNNGG 4 cut(s) 518, 519, 571, 705
BseGI GGATG 4 cut(s) 361, 682, 745, 1141
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 4 cut(s) 74, 583, 980, 1172
BseMII CTCAG 5 cut(s) 123, 390, 880, 1056, 1073
BseNI ACTGG 2 cut(s) 985, 1166
BseXI GCAGC 6 cut(s) 474, 477, 669, 839, 898, 1201
BsgI GTGCAG 2 cut(s) 429, 1174
BshFI GGCC 3 cut(s) 576, 922, 1131
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 1 cut(s) 75
BsiWI CGTACG 1 cut(s) 57
BslFI GGGAC 2 cut(s) 600, 757
BslI CCNNNNNNNGG 4 cut(s) 74, 583, 980, 1172
BsmAI GTCTC 4 cut(s) 122, 221, 309, 415
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 600, 757
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 3 cut(s) 576, 922, 1131
Bsp119I TTCGAA 2 cut(s) 595, 905
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 4 cut(s) 358, 427, 478, 1162
BspACI CCGC 3 cut(s) 98, 176, 583
BspANI GGCC 3 cut(s) 576, 922, 1131
BspCNI CTCAG 5 cut(s) 124, 391, 879, 1055, 1072
BspHI TCATGA 2 cut(s) 640, 1011
BspLI GGNNCC 1 cut(s) 985
BspPI GGATC 2 cut(s) 486, 1157
BspT104I TTCGAA 2 cut(s) 595, 905
BsrI ACTGG 2 cut(s) 985, 1166
BssECI CCNNGG 4 cut(s) 518, 519, 571, 705
BssMI GATC 4 cut(s) 358, 427, 478, 1162
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 4 cut(s) 151, 520, 573, 1133
Bst4CI ACNGT 7 cut(s) 13, 36, 212, 850, 1115, 1206, 1223
BstBI TTCGAA 2 cut(s) 595, 905
BstC8I GCNNGC 4 cut(s) 181, 564, 568, 658
BstDEI CTNAG 5 cut(s) 132, 399, 866, 1042, 1059
BstF5I GGATG 4 cut(s) 361, 682, 745, 1141
BstKTI GATC 4 cut(s) 361, 430, 481, 1165
BstMAI GTCTC 4 cut(s) 122, 221, 309, 415
BstMBI GATC 4 cut(s) 358, 427, 478, 1162
BstNI CCWGG 4 cut(s) 151, 520, 573, 1133
BstNSI RCATGY 1 cut(s) 660
BstSCI CCNGG 5 cut(s) 74, 149, 518, 571, 1131
BstSFI CTRYAG 2 cut(s) 790, 1147
BstV1I GCAGC 6 cut(s) 474, 477, 669, 839, 898, 1201
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 3 cut(s) 576, 922, 1131
BtrI CACGTC 2 cut(s) 239, 425
BtsCI GGATG 4 cut(s) 361, 682, 745, 1141
BtsIMutI CAGTG 5 cut(s) 121, 824, 978, 1120, 1173
Cac8I GCNNGC 4 cut(s) 181, 564, 568, 658
CciI TCATGA 2 cut(s) 640, 1011
Cfr13I GGNCC 1 cut(s) 920
Csp6I GTAC 7 cut(s) 58, 299, 702, 711, 761, 846, 1202
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 4 cut(s) 475, 641, 657, 1012
CviQI GTAC 7 cut(s) 58, 299, 702, 711, 761, 846, 1202
DdeI CTNAG 5 cut(s) 132, 399, 866, 1042, 1059
DpnI GATC 4 cut(s) 360, 429, 480, 1164
DpnII GATC 4 cut(s) 358, 427, 478, 1162
DraI TTTAAA 1 cut(s) 262
DraIII CACNNNGTG 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 705
Eco147I AGGCCT 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 97, 563
EcoRI GAATTC 1 cut(s) 940
EcoRII CCWGG 4 cut(s) 149, 518, 571, 1131
EcoT14I CCWWGG 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 705
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 4 cut(s) 478, 644, 660, 1015
FaqI GGGAC 2 cut(s) 600, 757
FatI CATG 4 cut(s) 474, 640, 656, 1011
FauI CCCGC 2 cut(s) 105, 576
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 1225
Fnu4HI GCNGC 7 cut(s) 177, 488, 491, 683, 828, 912, 1190
FokI GGATG 4 cut(s) 368, 689, 752, 1148
Fsp4HI GCNGC 7 cut(s) 177, 488, 491, 683, 828, 912, 1190
FspBI CTAG 4 cut(s) 24, 45, 699, 956
GluI GCNGC 7 cut(s) 177, 488, 491, 683, 828, 912, 1190
GsuI CTGGAG 1 cut(s) 1002
HaeIII GGCC 3 cut(s) 576, 922, 1131
HapII CCGG 1 cut(s) 75
Hin1II CATG 4 cut(s) 478, 644, 660, 1015
HinfI GANTC 7 cut(s) 104, 154, 403, 597, 644, 723, 745
HpaII CCGG 1 cut(s) 75
HphI GGTGA 5 cut(s) 30, 134, 392, 655, 1190
Hpy166II GTNNAC 3 cut(s) 466, 775, 1226
Hpy188I TCNGA 8 cut(s) 109, 284, 366, 400, 498, 869, 1045, 1212
Hpy188III TCNNGA 4 cut(s) 158, 446, 641, 1012
Hpy8I GTNNAC 3 cut(s) 466, 775, 1226
HpyAV CCTTC 1 cut(s) 587
HpyCH4III ACNGT 7 cut(s) 13, 36, 212, 850, 1115, 1206, 1223
HpyCH4IV ACGT 2 cut(s) 238, 424
HpyF3I CTNAG 5 cut(s) 132, 399, 866, 1042, 1059
HpySE526I ACGT 2 cut(s) 238, 424
Hsp92II CATG 4 cut(s) 478, 644, 660, 1015
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 4 cut(s) 358, 427, 478, 1162
LmnI GCTCC 2 cut(s) 983, 1140
Lsp1109I GCAGC 6 cut(s) 474, 477, 669, 839, 898, 1201
LweI GCATC 4 cut(s) 61, 275, 502, 839
MaeI CTAG 4 cut(s) 24, 45, 699, 956
MaeII ACGT 2 cut(s) 238, 424
MaeIII GTNAC 3 cut(s) 36, 122, 836
MalI GATC 4 cut(s) 360, 429, 480, 1164
MboI GATC 4 cut(s) 358, 427, 478, 1162
MboII GAAGA 3 cut(s) 718, 936, 1088
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 7 cut(s) 264, 319, 383, 940, 949, 988, 1085
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 862
MnlI CCTC 8 cut(s) 20, 751, 761, 812, 869, 875, 972, 1169
MseI TTAA 4 cut(s) 261, 629, 668, 716
MslI CAYNNNNRTG 2 cut(s) 437, 906
MspA1I CMGCKG 1 cut(s) 583
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 5 cut(s) 76, 151, 520, 573, 1133
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 4 cut(s) 151, 520, 573, 1133
NciI CCSGG 1 cut(s) 76
NdeII GATC 4 cut(s) 358, 427, 478, 1162
NlaIII CATG 4 cut(s) 478, 644, 660, 1015
NlaIV GGNNCC 1 cut(s) 985
NmuCI GTSAC 3 cut(s) 36, 122, 836
NspI RCATGY 1 cut(s) 660
NspV TTCGAA 2 cut(s) 595, 905
PaeI GCATGC 1 cut(s) 660
PagI TCATGA 2 cut(s) 640, 1011
PasI CCCWGGG 1 cut(s) 519
PceI AGGCCT 1 cut(s) 576
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 6 cut(s) 104, 154, 403, 597, 644, 723
Pfl23II CGTACG 1 cut(s) 57
PflMI CCANNNNNTGG 2 cut(s) 980, 1172
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 7 cut(s) 178, 489, 492, 684, 829, 913, 1191
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
Psp6I CCWGG 4 cut(s) 149, 518, 571, 1131
PspGI CCWGG 4 cut(s) 149, 518, 571, 1131
PspLI CGTACG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 985
PspPI GGNCC 1 cut(s) 920
PsuI RGATCY 1 cut(s) 478
RsaI GTAC 7 cut(s) 59, 300, 703, 712, 762, 847, 1203
RsaNI GTAC 7 cut(s) 58, 299, 702, 711, 761, 846, 1202
RseI CAYNNNNRTG 2 cut(s) 437, 906
SaqAI TTAA 4 cut(s) 261, 629, 668, 716
SatI GCNGC 7 cut(s) 177, 488, 491, 683, 828, 912, 1190
Sau3AI GATC 4 cut(s) 358, 427, 478, 1162
Sau96I GGNCC 1 cut(s) 920
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 5 cut(s) 76, 151, 520, 573, 1133
SduI GDGCHC 1 cut(s) 453
SfaNI GCATC 4 cut(s) 61, 275, 502, 839
SfcI CTRYAG 2 cut(s) 790, 1147
SfuI TTCGAA 2 cut(s) 595, 905
SmiMI CAYNNNNRTG 2 cut(s) 437, 906
SmlI CTYRAG 2 cut(s) 446, 915
SmoI CTYRAG 2 cut(s) 446, 915
SphI GCATGC 1 cut(s) 660
Sse9I AATT 7 cut(s) 264, 319, 383, 940, 949, 988, 1085
SseBI AGGCCT 1 cut(s) 576
SsiI CCGC 3 cut(s) 98, 176, 583
SspI AATATT 1 cut(s) 1034
SspMI CTAG 4 cut(s) 24, 45, 699, 956
StuI AGGCCT 1 cut(s) 576
StyD4I CCNGG 5 cut(s) 74, 149, 518, 571, 1131
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 7 cut(s) 13, 36, 212, 850, 1115, 1206, 1223
TaiI ACGT 2 cut(s) 241, 427
TaqI TCGA 5 cut(s) 17, 595, 600, 905, 992
TasI AATT 7 cut(s) 264, 319, 383, 940, 949, 988, 1085
TatI WGTACW 1 cut(s) 298
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 6 cut(s) 104, 154, 403, 597, 644, 723
Tru1I TTAA 4 cut(s) 261, 629, 668, 716
Tru9I TTAA 4 cut(s) 261, 629, 668, 716
TscAI CASTG 5 cut(s) 121, 824, 985, 1120, 1173
TseFI GTSAC 3 cut(s) 36, 122, 836
TseI GCWGC 6 cut(s) 487, 490, 682, 827, 911, 1189
Tsp45I GTSAC 3 cut(s) 36, 122, 836
TspDTI ATGAA 6 cut(s) 378, 463, 987, 1000, 1028, 1078
TspRI CASTG 5 cut(s) 121, 824, 985, 1120, 1173
Van91I CCANNNNNTGG 2 cut(s) 980, 1172
XapI RAATTY 3 cut(s) 383, 940, 949
XceI RCATGY 1 cut(s) 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XmiI GTMKAC 1 cut(s) 1225
XspI CTAG 4 cut(s) 24, 45, 699, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.