Rw1G037860

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002368
Physical Location & Seq
Forward (+)
65434643 .. 65436476
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037860.1

Sequence Viewer

Length: 1428 bp
ATGGATGCTATTCAGGCTATAGTTTTATACCCATCACCACCCATAGGTCACTTGGTTTCTATGGTAGAGTTAGGCAAACTCATACTTACTCACCATCCTTCACTAAGCATCCACATAATCCTTGCCACCCCACCTTACAGAGCCGATGATACCGCCCCATACATTGCCTCTGTGTCTGCCACTACATCCTCCATCATCTTCCACCGCCTCCCCACTGTCTCTCTCCCTCCCTCTATCACTTCCGGCACACGCAACCATGAAACTCTAACCTTTGAAGTTCTCCGCCTCAACAACCCTCACGTCCACCAAGCCCTCCTTTCCATCTCCAACAGCTTCACTGTCCAAGCTTTTATCATGGACTTCTTCTGTGGTCTCGGACTTTCTGTTGCTACTGATCTGAACATCCCTGGTTACTTTTACATAACATCTGGTGCAGGGTTCCTAGCTTCCTTCCTTTACCTTCCTACTATTCACAAAAACACTGACAAGAGCCTTAAAGACCTTGACACCCTCATCTTTATGCCAGGAGTACCACCAGTACATTCCTTAGATATGCCGAAACCATTTCTTGAACGCAATGACAAGGCTTATGAATGCTTCCTAGAGAACTCAACCCACTCGAGCAAATCAGCTGGGATTATCGTAAACACTTTTGAATCACTTGAACCTAGAACTATCAGAGCACTATCAGATGGACTATGCTTGCCTGATGATATTACCATGCCGCCCATCTACTGCATAGGACCATTAATCATTTCTCAGAGAGGAGGTGGTAGTGATGATGTGCCCGAGTGTTTGACGTGGCTGGATTCACAGCCAAGTGGAAGTGTGGTCTTCCTTTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGAGGAGATAGCTGTGGGGTTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTTGTCCGTAATCCACCTTCTCATAATCAAAGCGTGGCTATTGCAGGCCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGGTTTTTTGGATAGAACCAAGCATAGGGGGCTTGTGGTGAAGTCATGGGCGCCACAAGTAGAAGTTCTTAATCATGATTCAGTAGGTGGATTTGTGTGTCACTGTGGGTGGAACTCAATTTTGGAGGCGGTATGTGCTGGAGTGCCAATGTTGGCTTGGCCACTCTATGCAGAGCAGAGATTAAATAGGGTTGTTTTGGTTGAGGAAATAAAGATTGCTCTGCCGGTGAACGAATCAAAAAGCGGGTTTGTGAGTGCAAATGAGCTGGAGAATCGAGTTAGAGAGTTGATGGACTCGGAGGAAGGAGAGTCAGTCAGAAAGAAGATCGAGGCTCTGAGAAGTGAAGCAAATGCTGCACTGAGTGAAGGCGGGACATCTAAGGTCGCATTAGCTAAACTGGTTGAATCATGGAACTAA

Protein Analysis

475

Amino Acids

51.97

Weight (kDa)

5.31

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 437 4.9e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1060
AccIII TCCGGA 1 cut(s) 985
AciI CCGC 7 cut(s) 153, 205, 283, 725, 1139, 1254, 1380
AclWI GGATC 2 cut(s) 977, 990
AcoI YGGCCR 2 cut(s) 910, 1169
AcyI GRCGYC 1 cut(s) 1061
AdeI CACNNNGTG 1 cut(s) 1373
AfaI GTAC 2 cut(s) 531, 540
AfiI CCNNNNNNNGG 2 cut(s) 44, 1035
AgsI TTSAA 5 cut(s) 275, 572, 656, 665, 1415
AjiI CACGTC 2 cut(s) 301, 801
AjnI CCWGG 2 cut(s) 406, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AluBI AGCT 8 cut(s) 333, 347, 446, 632, 852, 890, 1276, 1403
AluI AGCT 8 cut(s) 333, 347, 446, 632, 852, 890, 1276, 1403
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 2 cut(s) 223, 377
AlwI GGATC 2 cut(s) 977, 990
Ama87I CYCGRG 2 cut(s) 619, 788
Aor13HI TCCGGA 1 cut(s) 985
AoxI GGCC 3 cut(s) 910, 973, 1169
ApeKI GCWGC 1 cut(s) 1364
AseI ATTAAT 1 cut(s) 749
AspLEI GCGC 1 cut(s) 1063
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 4 cut(s) 27, 83, 1060, 1249
AvaI CYCGRG 2 cut(s) 619, 788
AvaII GGWCC 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 789
BalI TGGCCA 2 cut(s) 912, 1171
BamHI GGATCC 1 cut(s) 982
BanI GGYRCC 1 cut(s) 1060
BarI GAAGNNNNNNTAC 2 cut(s) 928, 960
BbsI GAAGAC 1 cut(s) 826
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 1351
BccI CCATC 8 cut(s) 40, 102, 200, 329, 686, 737, 1004, 1294
BciT130I CCWGG 2 cut(s) 408, 525
BcoDI GTCTC 2 cut(s) 223, 377
BfaI CTAG 3 cut(s) 443, 602, 669
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 1064
BisI GCNGC 2 cut(s) 725, 1365
BlsI GCNGC 2 cut(s) 726, 1366
Bme1390I CCNGG 2 cut(s) 408, 525
Bme18I GGWCC 1 cut(s) 743
BmeT110I CYCGRG 2 cut(s) 619, 788
BmgBI CACGTC 2 cut(s) 301, 801
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 3 cut(s) 440, 984, 1062
BmrFI CCNGG 2 cut(s) 408, 525
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 826
BpmI CTGGAG 2 cut(s) 1170, 1298
Bpu10I CCTNAGC 1 cut(s) 853
BsaHI GRCGYC 1 cut(s) 1061
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 985
BsaXI ACNNNNNCTCC 2 cut(s) 1308, 1338
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 1035
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 2 cut(s) 536, 1413
Bse3DI GCAATG 2 cut(s) 162, 583
BseAI TCCGGA 1 cut(s) 985
BseBI CCWGG 2 cut(s) 408, 525
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 5 cut(s) 10, 94, 108, 185, 402
BseLI CCNNNNNNNGG 2 cut(s) 44, 1035
BseMI GCAATG 2 cut(s) 162, 583
BseMII CTCAG 3 cut(s) 773, 1337, 1361
BseNI ACTGG 2 cut(s) 536, 1413
BseRI GAGGAG 3 cut(s) 780, 896, 919
BseSI GKGCMC 1 cut(s) 789
BseXI GCAGC 1 cut(s) 1351
BseYI CCCAGC 1 cut(s) 632
BsgI GTGCAG 2 cut(s) 453, 1350
BshFI GGCC 3 cut(s) 912, 975, 1171
BshNI GGYRCC 1 cut(s) 1060
BsiHKAI GWGCWC 1 cut(s) 685
BsiHKCI CYCGRG 2 cut(s) 619, 788
BsiSI CCGG 3 cut(s) 243, 986, 1235
BslFI GGGAC 1 cut(s) 1396
BslI CCNNNNNNNGG 2 cut(s) 44, 1035
BsmAI GTCTC 2 cut(s) 223, 377
BsmFI GGGAC 1 cut(s) 1396
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 3 cut(s) 912, 975, 1171
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 2 cut(s) 619, 788
Bsp1286I GDGCHC 2 cut(s) 685, 789
Bsp13I TCCGGA 1 cut(s) 985
Bsp143I GATC 3 cut(s) 394, 982, 1335
BspACI CCGC 7 cut(s) 153, 205, 283, 725, 1139, 1254, 1380
BspANI GGCC 3 cut(s) 912, 975, 1171
BspCNI CTCAG 3 cut(s) 772, 1338, 1362
BspEI TCCGGA 1 cut(s) 985
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 3 cut(s) 440, 984, 1062
BspPI GGATC 2 cut(s) 977, 990
BspT107I GGYRCC 1 cut(s) 1060
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 2 cut(s) 162, 583
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 2 cut(s) 536, 1413
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 3 cut(s) 394, 982, 1335
BssNI GRCGYC 1 cut(s) 1061
Bst2UI CCWGG 2 cut(s) 408, 525
Bst4CI ACNGT 3 cut(s) 217, 340, 1115
BstACI GRCGYC 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 1364
BstC8I GCNNGC 2 cut(s) 704, 973
BstDEI CTNAG 7 cut(s) 104, 547, 759, 853, 1346, 1370, 1389
BstF5I GGATG 5 cut(s) 10, 94, 108, 185, 402
BstH2I RGCGCY 1 cut(s) 1064
BstHHI GCGC 1 cut(s) 1063
BstKTI GATC 3 cut(s) 397, 985, 1338
BstMAI GTCTC 2 cut(s) 223, 377
BstMBI GATC 3 cut(s) 394, 982, 1335
BstMWI GCNNNNNNNGC 4 cut(s) 14, 1039, 1145, 1364
BstNI CCWGG 2 cut(s) 408, 525
BstSCI CCNGG 2 cut(s) 406, 523
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 789
BstV1I GCAGC 1 cut(s) 1351
BstV2I GAAGAC 1 cut(s) 826
BstX2I RGATCY 1 cut(s) 982
BstYI RGATCY 1 cut(s) 982
BsuRI GGCC 3 cut(s) 912, 975, 1171
BtrI CACGTC 2 cut(s) 301, 801
BtsCI GGATG 5 cut(s) 10, 94, 108, 185, 402
BtsIMutI CAGTG 5 cut(s) 213, 336, 480, 1111, 1367
Cac8I GCNNGC 2 cut(s) 704, 973
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 1 cut(s) 1063
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 530, 539
CviAII CATG 6 cut(s) 257, 355, 721, 1056, 1085, 1419
CviQI GTAC 2 cut(s) 530, 539
DdeI CTNAG 7 cut(s) 104, 547, 759, 853, 1346, 1370, 1389
DinI GGCGCC 1 cut(s) 1062
DpnI GATC 3 cut(s) 396, 984, 1337
DpnII GATC 3 cut(s) 394, 982, 1335
DraIII CACNNNGTG 1 cut(s) 1373
EaeI YGGCCR 2 cut(s) 910, 1169
EciI GGCGGA 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 743
Eco88I CYCGRG 2 cut(s) 619, 788
EcoRII CCWGG 2 cut(s) 406, 523
EgeI GGCGCC 1 cut(s) 1062
EheI GGCGCC 1 cut(s) 1062
FaeI CATG 6 cut(s) 260, 358, 724, 1059, 1088, 1422
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 1396
FatI CATG 6 cut(s) 256, 354, 720, 1055, 1084, 1418
FauI CCCGC 2 cut(s) 1247, 1373
Fnu4HI GCNGC 2 cut(s) 725, 1365
FokI GGATG 5 cut(s) 17, 81, 95, 172, 389
Fsp4HI GCNGC 2 cut(s) 725, 1365
FspBI CTAG 3 cut(s) 443, 602, 669
GlaI GCGC 1 cut(s) 1062
GluI GCNGC 2 cut(s) 725, 1365
GsaI CCCAGC 1 cut(s) 636
GsuI CTGGAG 2 cut(s) 1170, 1298
HaeII RGCGCY 1 cut(s) 1064
HaeIII GGCC 3 cut(s) 912, 975, 1171
HapII CCGG 3 cut(s) 243, 986, 1235
HhaI GCGC 1 cut(s) 1063
Hin1I GRCGYC 1 cut(s) 1061
Hin1II CATG 6 cut(s) 260, 358, 724, 1059, 1088, 1422
Hin6I GCGC 1 cut(s) 1061
HinP1I GCGC 1 cut(s) 1061
HindIII AAGCTT 2 cut(s) 345, 850
HinfI GANTC 8 cut(s) 656, 809, 1088, 1244, 1282, 1304, 1319, 1415
HpaII CCGG 3 cut(s) 243, 986, 1235
HphI GGTGA 4 cut(s) 27, 83, 1060, 1249
Hpy166II GTNNAC 4 cut(s) 304, 646, 864, 1240
Hpy188I TCNGA 8 cut(s) 377, 399, 680, 691, 762, 1309, 1328, 1347
Hpy188III TCNNGA 4 cut(s) 569, 986, 1007, 1085
Hpy8I GTNNAC 4 cut(s) 304, 646, 864, 1240
HpyAV CCTTC 6 cut(s) 108, 460, 470, 954, 1307, 1370
HpyCH4III ACNGT 3 cut(s) 217, 340, 1115
HpyCH4IV ACGT 2 cut(s) 300, 800
HpyCH4V TGCA 6 cut(s) 434, 738, 971, 1181, 1268, 1367
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 1039, 1145, 1364
HpyF3I CTNAG 7 cut(s) 104, 547, 759, 853, 1346, 1370, 1389
HpySE526I ACGT 2 cut(s) 300, 800
Hsp92I GRCGYC 1 cut(s) 1061
Hsp92II CATG 6 cut(s) 260, 358, 724, 1059, 1088, 1422
HspAI GCGC 1 cut(s) 1061
KasI GGCGCC 1 cut(s) 1060
Kpn2I TCCGGA 1 cut(s) 985
Kzo9I GATC 3 cut(s) 394, 982, 1335
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 1 cut(s) 1351
LweI GCATC 1 cut(s) 117
MaeI CTAG 3 cut(s) 443, 602, 669
MaeII ACGT 2 cut(s) 300, 800
MaeIII GTNAC 3 cut(s) 47, 410, 1109
MalI GATC 3 cut(s) 396, 984, 1337
MboI GATC 3 cut(s) 394, 982, 1335
MboII GAAGA 4 cut(s) 190, 355, 826, 1345
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 2 cut(s) 685, 789
MlsI TGGCCA 2 cut(s) 912, 1171
MluCI AATT 1 cut(s) 1128
MluNI TGGCCA 2 cut(s) 912, 1171
Mly113I GGCGCC 1 cut(s) 1061
MlyI GAGTC 2 cut(s) 1298, 1328
MmeI TCCRAC 2 cut(s) 351, 858
Mox20I TGGCCA 2 cut(s) 912, 1171
MroI TCCGGA 1 cut(s) 985
MscI TGGCCA 2 cut(s) 912, 1171
MseI TTAA 4 cut(s) 495, 749, 1080, 1193
MslI CAYNNNNRTG 1 cut(s) 518
Msp20I TGGCCA 2 cut(s) 912, 1171
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 3 cut(s) 243, 986, 1235
MspR9I CCNGG 2 cut(s) 408, 525
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 2 cut(s) 408, 525
MwoI GCNNNNNNNGC 4 cut(s) 14, 1039, 1145, 1364
NarI GGCGCC 1 cut(s) 1061
NdeII GATC 3 cut(s) 394, 982, 1335
NlaIII CATG 6 cut(s) 260, 358, 724, 1059, 1088, 1422
NlaIV GGNNCC 3 cut(s) 440, 984, 1062
NmuCI GTSAC 2 cut(s) 47, 1109
PaeR7I CTCGAG 1 cut(s) 619
PagI TCATGA 1 cut(s) 1084
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 6 cut(s) 656, 809, 1088, 1244, 1282, 1415
PkrI GCNGC 2 cut(s) 726, 1366
PleI GAGTC 2 cut(s) 1298, 1327
PluTI GGCGCC 1 cut(s) 1064
PpsI GAGTC 2 cut(s) 1298, 1327
PshBI ATTAAT 1 cut(s) 749
Psp6I CCWGG 2 cut(s) 406, 523
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 2 cut(s) 406, 523
PspN4I GGNNCC 3 cut(s) 440, 984, 1062
PspPI GGNCC 1 cut(s) 743
PspXI VCTCGAGB 1 cut(s) 619
PsuI RGATCY 1 cut(s) 982
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 2 cut(s) 531, 540
RsaNI GTAC 2 cut(s) 530, 539
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 4 cut(s) 495, 749, 1080, 1193
SatI GCNGC 2 cut(s) 725, 1365
Sau3AI GATC 3 cut(s) 394, 982, 1335
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 2 cut(s) 1298, 1328
ScrFI CCNGG 2 cut(s) 408, 525
SduI GDGCHC 2 cut(s) 685, 789
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 1 cut(s) 18
SfoI GGCGCC 1 cut(s) 1062
Sfr274I CTCGAG 1 cut(s) 619
SinI GGWCC 1 cut(s) 743
SlaI CTCGAG 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
Sse9I AATT 1 cut(s) 1128
SsiI CCGC 7 cut(s) 153, 205, 283, 725, 1139, 1254, 1380
SspDI GGCGCC 1 cut(s) 1060
SspMI CTAG 3 cut(s) 443, 602, 669
StyD4I CCNGG 2 cut(s) 406, 523
TaaI ACNGT 3 cut(s) 217, 340, 1115
TaiI ACGT 2 cut(s) 303, 803
TaqI TCGA 3 cut(s) 620, 1285, 1338
TasI AATT 1 cut(s) 1128
TatI WGTACW 1 cut(s) 538
TauI GCSGC 1 cut(s) 727
TfiI GAWTC 6 cut(s) 656, 809, 1088, 1244, 1282, 1415
Tru1I TTAA 4 cut(s) 495, 749, 1080, 1193
Tru9I TTAA 4 cut(s) 495, 749, 1080, 1193
TscAI CASTG 5 cut(s) 220, 343, 487, 1118, 1374
TseFI GTSAC 2 cut(s) 47, 1109
TseI GCWGC 1 cut(s) 1364
Tsp45I GTSAC 2 cut(s) 47, 1109
TspDTI ATGAA 2 cut(s) 273, 606
TspGWI ACGGA 1 cut(s) 923
TspRI CASTG 5 cut(s) 220, 343, 487, 1118, 1374
VpaK11BI GGWCC 1 cut(s) 743
VspI ATTAAT 1 cut(s) 749
XcmI CCANNNNNNNNNTGG 2 cut(s) 49, 1164
XhoI CTCGAG 1 cut(s) 619
XspI CTAG 3 cut(s) 443, 602, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.