Rh1BG391400

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002368
Physical Location & Seq
Forward (+)
51765821 .. 51767698
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG391400.1

Sequence Viewer

Length: 1440 bp
ATGGATGCTATTCAGGCTATAGTTTTATACCCATCACCACCTATAGGCCACTTGGTTTCTATGGTAGAGTTAGGCAAACTCATACTTACTCACCATCCTTCACTAAGCATCCACATAATCCTTGCCACCCCACCTTACAGAGCCGATGATACCGCCCCATACGTTGCCTCTGTGTCTGCCACTACATCCTCCATCATCTTTCACCGCCTCCCCACTGTCTCTCTCCCTCCCTCTATCACTTCCGGAACACGCAACCATGAAACCCTAACCTTTGAAGTTCTCCGCCTCAACAACCCTCACGTCCACCAAGCCCTCCTTTCCATCTCCAACAGCTTCACTGTCCAGGCTTTTATCATGGACTTCTTCTGCGGTCTCGGACTTTCTGTTGCTACTGATCTGAACATCCCTGGTTACTTTTACTTAACATCTGGTGCAGGGTTCCTAGCTTCCTTCCTTTACCTTCCTACTATTCACAAAAACACTGACAAGAGCCTTAAAGACCTTGACACCCTTTTCTGTATTCCAGGAGTACCACCAGTACATTCCTTAGATATGCCGAAACCATTTCTTGAACGCAATGACAAGGCTTATGAATGCTTCCTAGAGAACTCAACCCACTCGACCAGATCAGCTGGGATTATCATAAACACTTTTGAATCACTTGAACCTAGAACTATCAGAGCACTATCAGATGGACTATGCTTGCCTGATGATATTACCATGCCGCCCATCTACTGCATAGGACCGTTAATCATTTCTCAAAGAGGTGGAGGCCGCGCTGATGTGCCTGAGTGTTTGACGTGGCTGGATTCACAGCCAAGTGGAAGTGTGGTCTTCCTTTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGAAGAGATAGCTGTGGGGTTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTTGTTCGTAATCCACCTTCTCATAATCAAAGCGTGGCTATTGCAGGCCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGGTTTTTTGGAGAGAACCAAGGATAGGGGTCTTGTGGTGAAGTCATGGGCGCCACAAGTAGAAGTTCTGAATCATGATTCAGTAGGCGGATTTGTGTGTCACTGTGGGTGGAACTCAATTTTGGAGGCGGTGTGTGCTGGGGTGCCAATGTTGGCTTGGCCACTCTATGCAGAGCAGAGATTAAATAGGGTTGTTTTGGTTGAGGAAATAAAGATTGCTCTGCCGGTGAACGAATCAAAAAGCGGGTTTGTGAGTGCAAATGAGGTTGAGAATCGAGTTAGAGAGTTGATGAACTCAGAGGAAGGAGAGTCAATCAGGAAGAAGATTGAGGTTCTGAGAAGTGAAGCAAATGCTGCAGTGAGTGAAGGCGGGACATCTAAGGTCGCATTAGCTAAACTGGTTGAATCATGGAATCAAAGCATGTTCTAG

Protein Analysis

479

Amino Acids

52.5

Weight (kDa)

5.4

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 437 4.2e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1060, 1153
AccII CGCG 1 cut(s) 777
AccIII TCCGGA 2 cut(s) 242, 985
AclWI GGATC 2 cut(s) 977, 990
AcoI YGGCCR 2 cut(s) 910, 1169
AcyI GRCGYC 1 cut(s) 1061
AfaI GTAC 2 cut(s) 531, 540
AfiI CCNNNNNNNGG 2 cut(s) 44, 1035
AgsI TTSAA 5 cut(s) 275, 572, 656, 665, 1415
AjiI CACGTC 2 cut(s) 301, 801
AjnI CCWGG 3 cut(s) 342, 406, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 1115, 1147
AluBI AGCT 6 cut(s) 333, 446, 632, 852, 890, 1403
AluI AGCT 6 cut(s) 333, 446, 632, 852, 890, 1403
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 2 cut(s) 223, 377
AlwI GGATC 2 cut(s) 977, 990
Aor13HI TCCGGA 2 cut(s) 242, 985
AoxI GGCC 5 cut(s) 46, 772, 910, 973, 1169
ApeKI GCWGC 1 cut(s) 1364
AspLEI GCGC 2 cut(s) 779, 1063
AspS9I GGNCC 1 cut(s) 743
AsuHPI GGTGA 5 cut(s) 27, 83, 194, 1060, 1249
AvaII GGWCC 1 cut(s) 743
BalI TGGCCA 2 cut(s) 912, 1171
BamHI GGATCC 1 cut(s) 982
BanI GGYRCC 2 cut(s) 1060, 1153
BarI GAAGNNNNNNTAC 2 cut(s) 928, 960
BbsI GAAGAC 1 cut(s) 826
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 1 cut(s) 1351
BccI CCATC 7 cut(s) 40, 102, 200, 329, 686, 737, 1004
BciT130I CCWGG 3 cut(s) 344, 408, 525
BcoDI GTCTC 2 cut(s) 223, 377
BfaI CTAG 4 cut(s) 443, 602, 669, 1438
BfmI CTRYAG 3 cut(s) 18, 42, 1365
BfoI RGCGCY 1 cut(s) 1064
BisI GCNGC 3 cut(s) 725, 775, 1365
BlsI GCNGC 3 cut(s) 726, 776, 1366
Bme1390I CCNGG 3 cut(s) 344, 408, 525
Bme18I GGWCC 1 cut(s) 743
BmgBI CACGTC 2 cut(s) 301, 801
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 4 cut(s) 440, 984, 1062, 1155
BmrFI CCNGG 3 cut(s) 344, 408, 525
BmsI GCATC 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 826
Bpu10I CCTNAGC 1 cut(s) 853
BsaHI GRCGYC 1 cut(s) 1061
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 406, 1029
BsaWI WCCGGW 2 cut(s) 242, 985
BsaXI ACNNNNNCTCC 2 cut(s) 1127, 1157
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 1035
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 2 cut(s) 536, 1413
Bse3DI GCAATG 1 cut(s) 583
BseAI TCCGGA 2 cut(s) 242, 985
BseBI CCWGG 3 cut(s) 344, 408, 525
BseDI CCNNGG 2 cut(s) 406, 1029
BseGI GGATG 5 cut(s) 10, 94, 108, 185, 402
BseLI CCNNNNNNNGG 2 cut(s) 44, 1035
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 3 cut(s) 780, 1320, 1337
BseNI ACTGG 2 cut(s) 536, 1413
BseRI GAGGAG 1 cut(s) 919
BseXI GCAGC 1 cut(s) 1351
BseYI CCCAGC 2 cut(s) 632, 1148
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 5 cut(s) 48, 774, 912, 975, 1171
BshNI GGYRCC 2 cut(s) 1060, 1153
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 3 cut(s) 243, 986, 1235
BslFI GGGAC 1 cut(s) 1396
BslI CCNNNNNNNGG 2 cut(s) 44, 1035
BsmAI GTCTC 2 cut(s) 223, 377
BsmFI GGGAC 1 cut(s) 1396
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 5 cut(s) 48, 774, 912, 975, 1171
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 685
Bsp13I TCCGGA 2 cut(s) 242, 985
Bsp143I GATC 3 cut(s) 394, 626, 982
BspANI GGCC 5 cut(s) 48, 774, 912, 975, 1171
BspCNI CTCAG 3 cut(s) 781, 1319, 1338
BspEI TCCGGA 2 cut(s) 242, 985
BspFNI CGCG 1 cut(s) 777
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 4 cut(s) 440, 984, 1062, 1155
BspMAI CTGCAG 1 cut(s) 1369
BspPI GGATC 2 cut(s) 977, 990
BspT107I GGYRCC 2 cut(s) 1060, 1153
BspTNI GGTCTC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 2 cut(s) 536, 1413
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 2 cut(s) 406, 1029
BssMI GATC 3 cut(s) 394, 626, 982
BssNI GRCGYC 1 cut(s) 1061
BssT1I CCWWGG 1 cut(s) 1029
Bst2UI CCWGG 3 cut(s) 344, 408, 525
Bst4CI ACNGT 4 cut(s) 217, 340, 747, 1115
Bst6I CTCTTC 1 cut(s) 876
BstACI GRCGYC 1 cut(s) 1061
BstAPI GCANNNNNTGC 1 cut(s) 1364
BstC8I GCNNGC 2 cut(s) 704, 973
BstDEI CTNAG 7 cut(s) 104, 547, 789, 853, 1306, 1346, 1389
BstF5I GGATG 5 cut(s) 10, 94, 108, 185, 402
BstFNI CGCG 1 cut(s) 777
BstH2I RGCGCY 1 cut(s) 1064
BstHHI GCGC 2 cut(s) 779, 1063
BstKTI GATC 3 cut(s) 397, 629, 985
BstMAI GTCTC 2 cut(s) 223, 377
BstMBI GATC 3 cut(s) 394, 626, 982
BstMWI GCNNNNNNNGC 3 cut(s) 14, 1145, 1364
BstNI CCWGG 3 cut(s) 344, 408, 525
BstNSI RCATGY 1 cut(s) 1435
BstSCI CCNGG 3 cut(s) 342, 406, 523
BstSFI CTRYAG 3 cut(s) 18, 42, 1365
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 1 cut(s) 1351
BstV2I GAAGAC 1 cut(s) 826
BstX2I RGATCY 1 cut(s) 982
BstYI RGATCY 1 cut(s) 982
BsuRI GGCC 5 cut(s) 48, 774, 912, 975, 1171
BtrI CACGTC 2 cut(s) 301, 801
BtsCI GGATG 5 cut(s) 10, 94, 108, 185, 402
BtsI GCAGTG 1 cut(s) 1374
BtsIMutI CAGTG 5 cut(s) 213, 336, 480, 1111, 1374
Cac8I GCNNGC 2 cut(s) 704, 973
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 2 cut(s) 779, 1063
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 1 cut(s) 743
Csp6I GTAC 2 cut(s) 530, 539
CviAII CATG 7 cut(s) 257, 355, 721, 1056, 1085, 1419, 1432
CviQI GTAC 2 cut(s) 530, 539
DdeI CTNAG 7 cut(s) 104, 547, 789, 853, 1306, 1346, 1389
DinI GGCGCC 1 cut(s) 1062
DpnI GATC 3 cut(s) 396, 628, 984
DpnII GATC 3 cut(s) 394, 626, 982
EaeI YGGCCR 2 cut(s) 910, 1169
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
EciI GGCGGA 2 cut(s) 272, 1113
Eco130I CCWWGG 1 cut(s) 1029
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 743
EcoRII CCWGG 3 cut(s) 342, 406, 523
EcoT14I CCWWGG 1 cut(s) 1029
EgeI GGCGCC 1 cut(s) 1062
EheI GGCGCC 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 1396
FatI CATG 7 cut(s) 256, 354, 720, 1055, 1084, 1418, 1431
FauI CCCGC 2 cut(s) 1247, 1373
Fnu4HI GCNGC 3 cut(s) 725, 775, 1365
FokI GGATG 5 cut(s) 17, 81, 95, 172, 389
Fsp4HI GCNGC 3 cut(s) 725, 775, 1365
FspBI CTAG 4 cut(s) 443, 602, 669, 1438
GlaI GCGC 2 cut(s) 778, 1062
GluI GCNGC 3 cut(s) 725, 775, 1365
GsaI CCCAGC 2 cut(s) 636, 1152
HaeII RGCGCY 1 cut(s) 1064
HaeIII GGCC 5 cut(s) 48, 774, 912, 975, 1171
HapII CCGG 3 cut(s) 243, 986, 1235
HhaI GCGC 2 cut(s) 779, 1063
Hin1I GRCGYC 1 cut(s) 1061
Hin1II CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
Hin6I GCGC 2 cut(s) 777, 1061
HinP1I GCGC 2 cut(s) 777, 1061
HindIII AAGCTT 1 cut(s) 850
HinfI GANTC 9 cut(s) 656, 809, 1081, 1088, 1244, 1282, 1319, 1415, 1423
HpaII CCGG 3 cut(s) 243, 986, 1235
HphI GGTGA 5 cut(s) 27, 83, 194, 1060, 1249
Hpy166II GTNNAC 3 cut(s) 304, 864, 1240
Hpy188I TCNGA 7 cut(s) 377, 399, 680, 691, 1080, 1309, 1347
Hpy188III TCNNGA 6 cut(s) 243, 569, 986, 1007, 1085, 1327
Hpy8I GTNNAC 3 cut(s) 304, 864, 1240
HpyAV CCTTC 6 cut(s) 108, 460, 470, 954, 1307, 1370
HpyCH4III ACNGT 4 cut(s) 217, 340, 747, 1115
HpyCH4IV ACGT 3 cut(s) 162, 300, 800
HpyCH4V TGCA 6 cut(s) 434, 738, 971, 1181, 1268, 1367
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 1145, 1364
HpyF3I CTNAG 7 cut(s) 104, 547, 789, 853, 1306, 1346, 1389
HpySE526I ACGT 3 cut(s) 162, 300, 800
Hsp92I GRCGYC 1 cut(s) 1061
Hsp92II CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
HspAI GCGC 2 cut(s) 777, 1061
KasI GGCGCC 1 cut(s) 1060
Kpn2I TCCGGA 2 cut(s) 242, 985
Kzo9I GATC 3 cut(s) 394, 626, 982
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 1 cut(s) 1351
LweI GCATC 1 cut(s) 117
MaeI CTAG 4 cut(s) 443, 602, 669, 1438
MaeII ACGT 3 cut(s) 162, 300, 800
MaeIII GTNAC 2 cut(s) 410, 1109
MalI GATC 3 cut(s) 396, 628, 984
MboI GATC 3 cut(s) 394, 626, 982
MboII GAAGA 5 cut(s) 355, 826, 893, 1342, 1345
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 1 cut(s) 685
MlsI TGGCCA 2 cut(s) 912, 1171
MluCI AATT 1 cut(s) 1128
MluNI TGGCCA 2 cut(s) 912, 1171
Mly113I GGCGCC 1 cut(s) 1061
MlyI GAGTC 1 cut(s) 1328
MmeI TCCRAC 2 cut(s) 351, 858
Mox20I TGGCCA 2 cut(s) 912, 1171
MroI TCCGGA 2 cut(s) 242, 985
MscI TGGCCA 2 cut(s) 912, 1171
MseI TTAA 4 cut(s) 422, 495, 749, 1193
Msp20I TGGCCA 2 cut(s) 912, 1171
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 3 cut(s) 243, 986, 1235
MspR9I CCNGG 3 cut(s) 344, 408, 525
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 3 cut(s) 344, 408, 525
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 3 cut(s) 14, 1145, 1364
NarI GGCGCC 1 cut(s) 1061
NdeII GATC 3 cut(s) 394, 626, 982
NlaIII CATG 7 cut(s) 260, 358, 724, 1059, 1088, 1422, 1435
NlaIV GGNNCC 4 cut(s) 440, 984, 1062, 1155
NmuCI GTSAC 1 cut(s) 1109
NspI RCATGY 1 cut(s) 1435
PagI TCATGA 1 cut(s) 1084
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 8 cut(s) 656, 809, 1081, 1088, 1244, 1282, 1415, 1423
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 3 cut(s) 726, 776, 1366
PleI GAGTC 1 cut(s) 1327
PluTI GGCGCC 1 cut(s) 1064
PpsI GAGTC 1 cut(s) 1327
Psp6I CCWGG 3 cut(s) 342, 406, 523
PspFI CCCAGC 2 cut(s) 632, 1148
PspGI CCWGG 3 cut(s) 342, 406, 523
PspN4I GGNNCC 4 cut(s) 440, 984, 1062, 1155
PspPI GGNCC 1 cut(s) 743
PstI CTGCAG 1 cut(s) 1369
PsuI RGATCY 1 cut(s) 982
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 2 cut(s) 531, 540
RsaNI GTAC 2 cut(s) 530, 539
SaqAI TTAA 4 cut(s) 422, 495, 749, 1193
SatI GCNGC 3 cut(s) 725, 775, 1365
Sau3AI GATC 3 cut(s) 394, 626, 982
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 1 cut(s) 1328
ScrFI CCNGG 3 cut(s) 344, 408, 525
SduI GDGCHC 1 cut(s) 685
SfaNI GCATC 1 cut(s) 117
SfcI CTRYAG 3 cut(s) 18, 42, 1365
SfoI GGCGCC 1 cut(s) 1062
SinI GGWCC 1 cut(s) 743
Sse9I AATT 1 cut(s) 1128
SspDI GGCGCC 1 cut(s) 1060
SspMI CTAG 4 cut(s) 443, 602, 669, 1438
StyD4I CCNGG 3 cut(s) 342, 406, 523
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 4 cut(s) 217, 340, 747, 1115
TaiI ACGT 3 cut(s) 165, 303, 803
TaqI TCGA 2 cut(s) 620, 1285
TasI AATT 1 cut(s) 1128
TatI WGTACW 1 cut(s) 538
TauI GCSGC 2 cut(s) 727, 777
TfiI GAWTC 8 cut(s) 656, 809, 1081, 1088, 1244, 1282, 1415, 1423
Tru1I TTAA 4 cut(s) 422, 495, 749, 1193
Tru9I TTAA 4 cut(s) 422, 495, 749, 1193
TscAI CASTG 5 cut(s) 220, 343, 487, 1118, 1374
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 1 cut(s) 1364
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 3 cut(s) 273, 606, 1316
TspRI CASTG 5 cut(s) 220, 343, 487, 1118, 1374
VpaK11BI GGWCC 1 cut(s) 743
XceI RCATGY 1 cut(s) 1435
XcmI CCANNNNNNNNNTGG 1 cut(s) 1164
XspI CTAG 4 cut(s) 443, 602, 669, 1438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.