RchiOBHm_Chr1g0378931

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002368
Physical Location & Seq
Forward (+)
65179892 .. 65181930
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60230

Sequence Viewer

Length: 1023 bp
ATGGACTTCTTCTGTGGTCTTGGGCTTTCTGTCGCTATTGATCTGAATATCCCAGGATATTTTTTCTTCACATCTGGTGCAGGATGCCTAGCTTCCTTTCTTACGCTCCCTGCTATTCACAAAAACACTGACAAGAGCCTCAAAGACCTTAACACCCTTCTCTCTATTCCAGGAGTACCACCAATACCTTCCTCTGATATGCCAAAACCAGTTTTGGTACGTAATGACAAGGCCTATGAGTGCTTCCTAGAAAACTCAACACAATTTCTCAAATCAGCTGGGATTATCGTGAACACGTTTGAATCACTCGAATCTAGGGCCATCAGAGCAATATCAGATGGACTATGCTTGCCTGAAGATGTTCCCACACCACCCATCTTTTGCATAGGTCCGTTAATCTTTGCTCACAATCAAAGAGGTGGTGGTAATGATGATGTTAGCTTAGGATTGTTTACAAAGGAGCAGTTGGGGGAAATAGCTGCGGGGTTAGAGAGGAGTGACCAAAGGTTCTTGTGGGTTGTCCGTAATCCACCTTCTCATAATCAAAGCGTTGCTATTGCAGGTCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGGTTTTTTGGATAGAACTAAGGATAGGGGTCTTATAGTGAAGTCATGGGCGCCACAAGTGGCAGTGCTGAATCATGATTCTCTAGGTGGGTTTGTGAGTCACTGTGGGTGGAACTCGGTGTTGGAGGCAGTGTGTGCTGGGGTGCCAATTGTGTCTTGGCCACTCTATGCTGAGCAGAGATTTAATAGGGTTATTTTGGTGGAGGAAATAAAGATTGCTTTACCAATGAACGAGTCACTAGACGGTTTTGTAAATGCAACAGAGGTGGAGAAGCGAGTTAGAGAGTTGATGGACTCGGAGAAAGGAGAGTCAATCAGGAAGAGGACCAAGGCCTTGAAGAGTGAAGCAAATGCTGCTCTGAGTGAAGCCGGGACATCTTGGATTGCATTAACTAAACTGGTCGAATCGTGGAATCAAGGCTGA

Protein Analysis

340

Amino Acids

37.11

Weight (kDa)

5.09

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 152 - 264 4.8e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 2 cut(s) 649, 742
AccIII TCCGGA 1 cut(s) 574
AciI CCGC 1 cut(s) 482
AclWI GGATC 2 cut(s) 566, 579
AcoI YGGCCR 1 cut(s) 758
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 650
AfaI GTAC 2 cut(s) 177, 219
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 2 cut(s) 302, 937
AjnI CCWGG 2 cut(s) 52, 169
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 4 cut(s) 92, 278, 441, 479
AluI AGCT 4 cut(s) 92, 278, 441, 479
AlwI GGATC 2 cut(s) 566, 579
Aor13HI TCCGGA 1 cut(s) 574
AoxI GGCC 4 cut(s) 231, 318, 758, 930
ApeKI GCWGC 2 cut(s) 479, 953
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 3 cut(s) 318, 389, 924
AsuC2I CCSGG 1 cut(s) 970
AvaII GGWCC 2 cut(s) 389, 924
BalI TGGCCA 1 cut(s) 760
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 2 cut(s) 649, 742
BarI GAAGNNNNNNTAC 2 cut(s) 517, 549
BbvI GCAGC 2 cut(s) 466, 940
BccI CCATC 5 cut(s) 329, 332, 383, 593, 883
BciT130I CCWGG 2 cut(s) 54, 171
BcnI CCSGG 1 cut(s) 970
BfaI CTAG 5 cut(s) 89, 248, 315, 683, 839
BfoI RGCGCY 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 2 cut(s) 480, 954
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 2 cut(s) 481, 955
Bme1390I CCNGG 3 cut(s) 54, 171, 970
Bme18I GGWCC 2 cut(s) 389, 924
BmgT120I GGNCC 3 cut(s) 318, 389, 924
BmiI GGNNCC 3 cut(s) 573, 651, 744
BmrFI CCNGG 3 cut(s) 54, 171, 970
BmsI GCATC 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 442
Bpu1102I GCTNAGC 1 cut(s) 771
BpuMI CCSGG 1 cut(s) 970
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 650
BsaJI CCNNGG 2 cut(s) 52, 927
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 2 cut(s) 716, 746
Bse1I ACTGG 2 cut(s) 209, 1002
BseAI TCCGGA 1 cut(s) 574
BseBI CCWGG 2 cut(s) 54, 171
BseDI CCNNGG 2 cut(s) 52, 927
BseGI GGATG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 762, 950
BseNI ACTGG 2 cut(s) 209, 1002
BseRI GAGGAG 1 cut(s) 508
BseXI GCAGC 2 cut(s) 466, 940
BseYI CCCAGC 2 cut(s) 278, 737
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 4 cut(s) 233, 320, 760, 932
BshNI GGYRCC 2 cut(s) 649, 742
BsiSI CCGG 2 cut(s) 575, 969
BslFI GGGAC 1 cut(s) 985
BsmFI GGGAC 1 cut(s) 985
BsnI GGCC 4 cut(s) 233, 320, 760, 932
Bsp13I TCCGGA 1 cut(s) 574
Bsp143I GATC 2 cut(s) 40, 571
Bsp1720I GCTNAGC 1 cut(s) 771
BspACI CCGC 1 cut(s) 482
BspANI GGCC 4 cut(s) 233, 320, 760, 932
BspCNI CTCAG 2 cut(s) 763, 951
BspEI TCCGGA 1 cut(s) 574
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 573, 651, 744
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 2 cut(s) 566, 579
BspT107I GGYRCC 2 cut(s) 649, 742
BsrI ACTGG 2 cut(s) 209, 1002
BssECI CCNNGG 2 cut(s) 52, 927
BssMI GATC 2 cut(s) 40, 571
BssNI GRCGYC 1 cut(s) 650
BssT1I CCWWGG 1 cut(s) 927
Bst2UI CCWGG 2 cut(s) 54, 171
Bst4CI ACNGT 2 cut(s) 704, 845
Bst6I CTCTTC 2 cut(s) 914, 932
BstACI GRCGYC 1 cut(s) 650
BstAPI GCANNNNNTGC 2 cut(s) 734, 953
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 4 cut(s) 442, 618, 771, 959
BstF5I GGATG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 2 cut(s) 43, 574
BstMBI GATC 2 cut(s) 40, 571
BstMWI GCNNNNNNNGC 3 cut(s) 326, 734, 953
BstNI CCWGG 2 cut(s) 54, 171
BstSCI CCNGG 3 cut(s) 52, 169, 968
BstSNI TACGTA 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 466, 940
BstX2I RGATCY 1 cut(s) 571
BstYI RGATCY 1 cut(s) 571
BsuRI GGCC 4 cut(s) 233, 320, 760, 932
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 2 cut(s) 669, 735
BtsIMutI CAGTG 4 cut(s) 126, 669, 700, 735
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 350
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 3 cut(s) 318, 389, 924
Csp6I GTAC 2 cut(s) 176, 218
CspCI CAANNNNNGTGG 2 cut(s) 846, 881
CviAII CATG 2 cut(s) 645, 674
CviQI GTAC 2 cut(s) 176, 218
DdeI CTNAG 4 cut(s) 442, 618, 771, 959
DinI GGCGCC 1 cut(s) 651
DpnI GATC 2 cut(s) 42, 573
DpnII GATC 2 cut(s) 40, 571
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 2 cut(s) 914, 932
EarI CTCTTC 2 cut(s) 914, 932
Eco105I TACGTA 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 927
Eco147I AGGCCT 2 cut(s) 233, 932
Eco47I GGWCC 2 cut(s) 389, 924
Eco57I CTGAAG 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 52, 169
EcoT14I CCWWGG 1 cut(s) 927
EgeI GGCGCC 1 cut(s) 651
EheI GGCGCC 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 927
FaeI CATG 2 cut(s) 648, 677
FaiI YATR 9 cut(s) 200, 237, 346, 386, 540, 635, 646, 675, 768
FaqI GGGAC 1 cut(s) 985
FatI CATG 2 cut(s) 644, 673
FauI CCCGC 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 480, 954
FokI GGATG 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 480, 954
FspBI CTAG 5 cut(s) 89, 248, 315, 683, 839
GlaI GCGC 1 cut(s) 651
GluI GCNGC 2 cut(s) 480, 954
GsaI CCCAGC 2 cut(s) 282, 741
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 4 cut(s) 233, 320, 760, 932
HapII CCGG 2 cut(s) 575, 969
HhaI GCGC 1 cut(s) 652
Hin1I GRCGYC 1 cut(s) 650
Hin1II CATG 2 cut(s) 648, 677
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HpaII CCGG 2 cut(s) 575, 969
Hpy166II GTNNAC 2 cut(s) 292, 453
Hpy188I TCNGA 6 cut(s) 45, 196, 326, 337, 898, 960
Hpy188III TCNNGA 5 cut(s) 289, 575, 596, 674, 916
Hpy8I GTNNAC 2 cut(s) 292, 453
HpyAV CCTTC 3 cut(s) 167, 198, 543
HpyCH4III ACNGT 2 cut(s) 704, 845
HpyCH4IV ACGT 2 cut(s) 220, 296
HpyCH4V TGCA 5 cut(s) 80, 384, 560, 857, 986
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 734, 953
HpyF3I CTNAG 4 cut(s) 442, 618, 771, 959
HpySE526I ACGT 2 cut(s) 220, 296
Hsp92I GRCGYC 1 cut(s) 650
Hsp92II CATG 2 cut(s) 648, 677
HspAI GCGC 1 cut(s) 650
KasI GGCGCC 1 cut(s) 649
Kpn2I TCCGGA 1 cut(s) 574
Kzo9I GATC 2 cut(s) 40, 571
LmnI GCTCC 2 cut(s) 111, 460
Lsp1109I GCAGC 2 cut(s) 466, 940
LweI GCATC 1 cut(s) 74
MaeI CTAG 5 cut(s) 89, 248, 315, 683, 839
MaeII ACGT 2 cut(s) 220, 296
MaeIII GTNAC 3 cut(s) 497, 698, 834
MalI GATC 2 cut(s) 42, 573
MboI GATC 2 cut(s) 40, 571
MboII GAAGA 4 cut(s) 58, 368, 931, 949
MfeI CAATTG 1 cut(s) 747
MflI RGATCY 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 760
MluCI AATT 2 cut(s) 263, 747
MluNI TGGCCA 1 cut(s) 760
Mly113I GGCGCC 1 cut(s) 650
MlyI GAGTC 4 cut(s) 706, 842, 887, 917
MmeI TCCRAC 1 cut(s) 702
MnlI CCTC 8 cut(s) 149, 202, 410, 486, 718, 796, 856, 915
Mox20I TGGCCA 1 cut(s) 760
MroI TCCGGA 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 360
MscI TGGCCA 1 cut(s) 760
MseI TTAA 4 cut(s) 150, 395, 783, 989
Msp20I TGGCCA 1 cut(s) 760
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 575, 969
MspR9I CCNGG 3 cut(s) 54, 171, 970
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 2 cut(s) 54, 171
MwoI GCNNNNNNNGC 3 cut(s) 326, 734, 953
NarI GGCGCC 1 cut(s) 650
NciI CCSGG 1 cut(s) 970
NdeII GATC 2 cut(s) 40, 571
NlaIII CATG 2 cut(s) 648, 677
NlaIV GGNNCC 3 cut(s) 573, 651, 744
NmuCI GTSAC 3 cut(s) 497, 698, 834
PagI TCATGA 1 cut(s) 673
PceI AGGCCT 2 cut(s) 233, 932
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 6 cut(s) 302, 311, 670, 677, 1004, 1012
PfoI TCCNGGA 1 cut(s) 169
PkrI GCNGC 2 cut(s) 481, 955
PleI GAGTC 4 cut(s) 705, 841, 887, 916
PluTI GGCGCC 1 cut(s) 653
PpsI GAGTC 4 cut(s) 705, 841, 887, 916
Ppu21I YACGTR 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 52, 169
PspFI CCCAGC 2 cut(s) 278, 737
PspGI CCWGG 2 cut(s) 52, 169
PspN4I GGNNCC 3 cut(s) 573, 651, 744
PspPI GGNCC 3 cut(s) 318, 389, 924
PsuI RGATCY 1 cut(s) 571
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 2 cut(s) 177, 219
RsaNI GTAC 2 cut(s) 176, 218
SaqAI TTAA 4 cut(s) 150, 395, 783, 989
SatI GCNGC 2 cut(s) 480, 954
Sau3AI GATC 2 cut(s) 40, 571
Sau96I GGNCC 3 cut(s) 318, 389, 924
SchI GAGTC 4 cut(s) 706, 842, 887, 917
ScrFI CCNGG 3 cut(s) 54, 171, 970
SfaNI GCATC 1 cut(s) 74
SfoI GGCGCC 1 cut(s) 651
SinI GGWCC 2 cut(s) 389, 924
SnaBI TACGTA 1 cut(s) 221
Sse9I AATT 2 cut(s) 263, 747
SseBI AGGCCT 2 cut(s) 233, 932
SsiI CCGC 1 cut(s) 482
SspDI GGCGCC 1 cut(s) 649
SspMI CTAG 5 cut(s) 89, 248, 315, 683, 839
StuI AGGCCT 2 cut(s) 233, 932
StyD4I CCNGG 3 cut(s) 52, 169, 968
StyI CCWWGG 1 cut(s) 927
TaaI ACNGT 2 cut(s) 704, 845
TaiI ACGT 2 cut(s) 223, 299
TaqI TCGA 2 cut(s) 309, 1002
TasI AATT 2 cut(s) 263, 747
TfiI GAWTC 6 cut(s) 302, 311, 670, 677, 1004, 1012
Tru1I TTAA 4 cut(s) 150, 395, 783, 989
Tru9I TTAA 4 cut(s) 150, 395, 783, 989
TscAI CASTG 4 cut(s) 133, 669, 707, 735
TseFI GTSAC 3 cut(s) 497, 698, 834
TseI GCWGC 2 cut(s) 479, 953
Tsp45I GTSAC 3 cut(s) 497, 698, 834
TspDTI ATGAA 1 cut(s) 842
TspGWI ACGGA 2 cut(s) 381, 512
TspRI CASTG 4 cut(s) 133, 669, 707, 735
VpaK11BI GGWCC 2 cut(s) 389, 924
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 5 cut(s) 89, 248, 315, 683, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.