Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002368

Physical Location & Seq

Genomic Coordinates Forward (+)

25811446 .. 25812118

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTGGACTCACAGCCAAGTGGAAGCGTGGTCAGTTGAAGGAAATTGCGATTGGGTTGGAGAACAGTGGCCACAGATTTTTGTGGGTGGTCCGTAATCCGCCAGCCCAAAATCAAATTCAGGTGGCCATTACAGGCCAGTCCGATCGGGAATTGAAATCTCTACTCCCGGAAGGGTTCTTGGATCGGACCAAGGACCGGGGGCTCGTGGTCAAGTCGTGGGCCCCGCAAGTGGCGGTGTTGAATCACGACTCAGTGGGTGGGTTTGTGAGTCATTGCGGGTGGAACTCGGTGTTGGAATCGGTGTGTGCCGGTGTGCCGATTGTGGCTTGGCCGCTCTACGCCGAGCAGAGATTCAATCGAGTGGTTTTGGTGGAGGAGATTAAGATTGCTTTGCCGATGAACGAGTCAGAAGATGGGTTTGTGAGAGCGGCGGAGGTGGAGAAGCGAGTTACGGAGTTGATGGACTCGGAGGAAGGCGAGGTGATGAGGAAGCGTACAAAGGCTGTGCAAAATGAAGCCCATGCAGCGTTGGGTGAGACCGGGTCGTCTGGGTTTGCATTGACTAAACTACTTGAAATGTGGGGCACAACTGGCTCGAGCAGTTCCACGAAAGCCCTATTCACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

211

Amino Acids

23.05

Weight (kDa)

6.45

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16520 AT3G16520 AT3G16520
fragaria_vesca	FvH4_1g30110 FvH4_7g30500 FvH4_7g30540
malus_domestica	MD01G1210600.v1.1 MD01G1210700.v1.1 MD07G1280800.v1.1 MD07G1281000.v1.1
prunus_persica	Prupe.2G303000_v2.0.a1
pyrus_communis	pycom01g22110 pycom07g25550
rosa_chinensis	RchiOBHm_Chr1g0378901 RchiOBHm_Chr1g0378931 RchiOBHm_Chr1g0378941
rosa_laevigata	RLG00000026407 RLG00000026408 RLG00000026410
rosa_multiflora	Rmu_sc0000556.1_g000032 Rmu_sc0000556.1_g000035 Rmu_sc0006761.1_g000001 Rmu_sc0006761.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280260 Rroxscaffold_4G00280270 Rroxscaffold_4G00280280
rosa_rugosa	Rorug01G0411000 Rorug01G0411500 Rorug07G0124400
rosa_samantha	Rh1AG433800 Rh1BG391400 Rh1BG391600 Rh1CG404200 Rh1CG404400 Rh1DG422600 Rh1DG422800 Rh7BG250700
rosa_wichuraiana	Rw0G000080 Rw0G000090 Rw1G037860 Rw1G037880 Rw1G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	547
AccBSI	CCGCTC	2 cut(s)	337, 431
AciI	CCGC	7 cut(s)	101, 227, 236, 279, 335, 431, 434
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	3 cut(s)	70, 126, 332
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	198, 232
AgsI	TTSAA	5 cut(s)	40, 157, 244, 358, 578
AjuI	GAANNNNNNNTTGG	6 cut(s)	36, 68, 102, 134, 278, 310
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	5 cut(s)	70, 126, 136, 222, 332
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	117
AspS9I	GGNCC	5 cut(s)	91, 189, 196, 222, 223
AsuC2I	CCSGG	3 cut(s)	170, 200, 544
AsuHPI	GGTGA	2 cut(s)	496, 548
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	3 cut(s)	91, 189, 196
BaeGI	GKGCMC	2 cut(s)	226, 590
BalI	TGGCCA	2 cut(s)	72, 128
BanII	GRGCYC	2 cut(s)	207, 226
BauI	CACGAG	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	2 cut(s)	410, 457
BcnI	CCSGG	3 cut(s)	170, 200, 544
BcoDI	GTCTC	1 cut(s)	533
BisI	GCNGC	3 cut(s)	335, 432, 528
BlsI	GCNGC	3 cut(s)	336, 433, 529
Bme1390I	CCNGG	3 cut(s)	170, 200, 544
Bme18I	GGWCC	3 cut(s)	91, 189, 196
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	5 cut(s)	91, 189, 196, 222, 223
BmiI	GGNNCC	2 cut(s)	224, 225
BmrFI	CCNGG	3 cut(s)	170, 200, 544
BpuMI	CCSGG	3 cut(s)	170, 200, 544
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	192, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 232
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	139, 598
Bse3DI	GCAATG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	192, 199
BseLI	CCNNNNNNNGG	2 cut(s)	198, 232
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	139, 598
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	2 cut(s)	226, 590
BseXI	GCAGC	1 cut(s)	539
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	5 cut(s)	72, 128, 138, 224, 334
BsiEI	CGRYCG	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	4 cut(s)	170, 199, 312, 543
BslI	CCNNNNNNNGG	2 cut(s)	198, 232
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	5 cut(s)	72, 128, 138, 224, 334
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	598
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	207, 226, 590
Bsp143I	GATC	2 cut(s)	145, 184
BspACI	CCGC	7 cut(s)	101, 227, 236, 279, 335, 431, 434
BspANI	GGCC	5 cut(s)	72, 128, 138, 224, 334
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	224, 225
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	2 cut(s)	337, 431
BsrDI	GCAATG	1 cut(s)	274
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	139, 598
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	192, 199
BssMI	GATC	2 cut(s)	145, 184
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	148, 187
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	145, 184
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 594
BstSCI	CCNGG	3 cut(s)	168, 198, 542
BstSLI	GKGCMC	2 cut(s)	226, 590
BstV1I	GCAGC	1 cut(s)	539
BsuRI	GGCC	5 cut(s)	72, 128, 138, 224, 334
BtsIMutI	CAGTG	2 cut(s)	73, 261
Cac8I	GCNNGC	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	5 cut(s)	91, 189, 196, 222, 223
Csp6I	GTAC	1 cut(s)	498
CviAII	CATG	1 cut(s)	524
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	2 cut(s)	147, 186
DpnII	GATC	2 cut(s)	145, 184
DrdI	GACNNNNNNGTC	1 cut(s)	547
DseDI	GACNNNNNNGTC	1 cut(s)	547
EaeI	YGGCCR	3 cut(s)	70, 126, 332
EciI	GGCGGA	2 cut(s)	90, 449
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	2 cut(s)	207, 226
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	3 cut(s)	91, 189, 196
Eco88I	CYCGRG	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	2 cut(s)	207, 226
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	527
FaiI	YATR	1 cut(s)	525
FatI	CATG	1 cut(s)	523
FauI	CCCGC	2 cut(s)	234, 272
Fnu4HI	GCNGC	3 cut(s)	335, 432, 528
FriOI	GRGCYC	2 cut(s)	207, 226
Fsp4HI	GCNGC	3 cut(s)	335, 432, 528
GluI	GCNGC	3 cut(s)	335, 432, 528
HaeIII	GGCC	5 cut(s)	72, 128, 138, 224, 334
HapII	CCGG	4 cut(s)	170, 199, 312, 543
Hin1II	CATG	1 cut(s)	527
HinfI	GANTC	8 cut(s)	9, 244, 251, 271, 299, 354, 407, 467
HpaII	CCGG	4 cut(s)	170, 199, 312, 543
HphI	GGTGA	2 cut(s)	496, 548
Hpy188I	TCNGA	4 cut(s)	145, 189, 412, 472
Hpy188III	TCNNGA	2 cut(s)	149, 248
HpyAV	CCTTC	3 cut(s)	34, 167, 470
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	511, 527, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 594
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	145, 184
Lsp1109I	GCAGC	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	2 cut(s)	147, 186
MbiI	CCGCTC	2 cut(s)	337, 431
MboI	GATC	2 cut(s)	145, 184
MboII	GAAGA	1 cut(s)	425
MhlI	GDGCHC	3 cut(s)	207, 226, 590
MlsI	TGGCCA	2 cut(s)	72, 128
MluCI	AATT	3 cut(s)	45, 117, 152
MluNI	TGGCCA	2 cut(s)	72, 128
MlyI	GAGTC	5 cut(s)	3, 245, 280, 416, 461
MmeI	TCCRAC	2 cut(s)	39, 276
MnlI	CCTC	5 cut(s)	370, 430, 466, 475, 483
Mox20I	TGGCCA	2 cut(s)	72, 128
MscI	TGGCCA	2 cut(s)	72, 128
MseI	TTAA	2 cut(s)	384, 631
Msp20I	TGGCCA	2 cut(s)	72, 128
MspI	CCGG	4 cut(s)	170, 199, 312, 543
MspR9I	CCNGG	3 cut(s)	170, 200, 544
MwoI	GCNNNNNNNGC	2 cut(s)	527, 594
NciI	CCSGG	3 cut(s)	170, 200, 544
NdeII	GATC	2 cut(s)	145, 184
NlaIII	CATG	1 cut(s)	527
NlaIV	GGNNCC	2 cut(s)	224, 225
NmeAIII	GCCGAG	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	244, 299, 354
PflFI	GACNNNGTC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	336, 433, 529
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	5 cut(s)	3, 245, 279, 415, 461
PpsI	GAGTC	5 cut(s)	3, 245, 279, 415, 461
PspN4I	GGNNCC	2 cut(s)	224, 225
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	5 cut(s)	91, 189, 196, 222, 223
PspXI	VCTCGAGB	1 cut(s)	598
PsyI	GACNNNGTC	1 cut(s)	544
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	384, 631
SatI	GCNGC	3 cut(s)	335, 432, 528
Sau3AI	GATC	2 cut(s)	145, 184
Sau96I	GGNCC	5 cut(s)	91, 189, 196, 222, 223
SchI	GAGTC	5 cut(s)	3, 245, 280, 416, 461
ScrFI	CCNGG	3 cut(s)	170, 200, 544
SduI	GDGCHC	3 cut(s)	207, 226, 590
SetI	ASST	3 cut(s)	126, 441, 486
Sfr274I	CTCGAG	1 cut(s)	598
SinI	GGWCC	3 cut(s)	91, 189, 196
SlaI	CTCGAG	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	3 cut(s)	45, 117, 152
SsiI	CCGC	7 cut(s)	101, 227, 236, 279, 335, 431, 434
StyD4I	CCNGG	3 cut(s)	168, 198, 542
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	361, 599
TasI	AATT	3 cut(s)	45, 117, 152
TauI	GCSGC	2 cut(s)	337, 434
TfiI	GAWTC	3 cut(s)	244, 299, 354
Tru1I	TTAA	2 cut(s)	384, 631
Tru9I	TTAA	2 cut(s)	384, 631
TscAI	CASTG	2 cut(s)	73, 261
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	2 cut(s)	416, 531
TspGWI	ACGGA	2 cut(s)	83, 470
TspRI	CASTG	2 cut(s)	73, 261
Tth111I	GACNNNGTC	1 cut(s)	544
VpaK11BI	GGWCC	3 cut(s)	91, 189, 196
XapI	RAATTY	1 cut(s)	117
XhoI	CTCGAG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.