Rw1G037890

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002368
Physical Location & Seq
Forward (+)
65443583 .. 65444947
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037890.1

Sequence Viewer

Length: 1365 bp
ATGGTAGAGCTTGGCAAACTCTTACTCACTCACCACCCTTCTTTCTCCATCACAATCCTCGCCTCAACCGCGCCAACCACCATTGCAGCCACCGCCAAACTGGTCGCCAGCTCCAATGATCAGTTGACAAACTACATCAAAGCCGTCTCTGCCGACAACCCTGCCATCAACTTCCACCATCTCCCAACCATTTCTTCTCTTCCAGAACACATCGAGAAGCTCAACCTCCCTTTCGAATATGCACGTCTCCAAATCCCCAACATCCTCCAAGTCCTCCAAACCCTTAAGTCAAGCCTCAAAGCCCTTATCCTCGACATGTTTTGCGACGCATTGTTCGACGTCGCGAAAGACCTCAACATCCCTACATTCTACTTCTACACCTCCGCAGGAAGGAGTCTTGCTGTCTTACTCAACATCCCCACCTTCCATCGCACAACCAACAGTCTGTCTGATTTTGGCGACGTCCAGATTTCCATTTCGGGCATGCCGCCGATTCCTGTTTCGGCAATGCCCAAGCTGTTGTTTGACCGCTCTACTAATTTCTACAAGAGCTTCCTTTCGACTTCAACTCACATGGCAAAGTCCAATGGAATCATTCTCAACACGTTTGATCTGCTGGAAGAGAGAGCCCTCAAAGCGTTGAGGGCTGGACTGTGCTTGCCGAACCAACCTACACCTCCGATCTTCACCGTCGGACCGTTGATCTCAGGGAAGAGTGGAGATAATGATGAGCATGAGAGCTTGAAGTGGCTAAACAACCAGCCCAAAGACAGCGTTGTGTTTCTATGTTTCGGAAGCATGGGAGTGTTTTCTATCAAACAGTTGGAGGCCATGGCTTTAGGTTTAGAGAAAAGTGGCCAGAGGTTTTTGTGGGTGGTACGTAATCCACCTATAGAAGAGTTACCGGTAGAGGAGCCAAGTTTGGAGGAAATATTGCCAAAGGGTTTTGTGGAAAGAACAAAGGATAGGGGACTTGTGGTGAGGAAGTGGGCGCCTCAGGTGGAGGTACTCAGTCATGACTCGGTGGGCGGGTTCGTGACTCACTGTGGGTGGAACTCGGTTTTGGAAGCAGTGTGTAATGGGGTGCCGATGGTTGCGTGGCCTTTGTACGCCGAGCAAAAGCTGGGCAGGGTGTTTCTTGTGGAGGAGATGAAGGTGGCTGTGGGGGTGAAAGAGTCCGAAACCGGGTTTGTGAGTGCGGACGAGTTGGAGAAGCGAGTGAGGGAGTTGATGGACTCCAAGAGTGGGGATGAAATAAGAGGGAGGGTTTTGGAGTTTAGAACTGGTGGCGTGAAGGCCAAGGAAGAAGGCGGGTCTTCTGTTGCTTCCTTGGCCAAGTTGGCTCAGCTGTGGAAGCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 map00942
Pfam Domains
Protein Families
UDPGT

Protein Analysis

454

Amino Acids

50.0

Weight (kDa)

6.39

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 236 - 415 1.8e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 342, 465
AccB1I GGYRCC 2 cut(s) 991, 1084
AccBSI CCGCTC 1 cut(s) 531
AccII CGCG 2 cut(s) 71, 344
AciI CCGC 8 cut(s) 69, 93, 384, 488, 529, 1029, 1199, 1311
AcoI YGGCCR 2 cut(s) 856, 1332
AcyI GRCGYC 3 cut(s) 339, 462, 992
AfaI GTAC 3 cut(s) 879, 1008, 1109
AfiI CCNNNNNNNGG 3 cut(s) 390, 1185, 1245
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 2 cut(s) 315, 603
AgeI ACCGGT 1 cut(s) 904
AgsI TTSAA 2 cut(s) 567, 745
AjiI CACGTC 1 cut(s) 245
AjuI GAANNNNNNNTTGG 4 cut(s) 178, 210, 1046, 1078
AluBI AGCT 8 cut(s) 10, 111, 220, 517, 552, 741, 1123, 1348
AluI AGCT 8 cut(s) 10, 111, 220, 517, 552, 741, 1123, 1348
Alw26I GTCTC 2 cut(s) 151, 251
AoxI GGCC 5 cut(s) 828, 856, 1100, 1296, 1332
ApeKI GCWGC 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AsiGI ACCGGT 1 cut(s) 904
AspLEI GCGC 2 cut(s) 73, 994
AspS9I GGNCC 1 cut(s) 695
AsuC2I CCSGG 1 cut(s) 1186
AsuHPI GGTGA 4 cut(s) 23, 679, 991, 1180
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 695
AxyI CCTNAGG 1 cut(s) 996
BalI TGGCCA 2 cut(s) 858, 1334
BanI GGYRCC 2 cut(s) 991, 1084
BanII GRGCYC 1 cut(s) 631
BbsI GAAGAC 1 cut(s) 1308
BbvI GCAGC 1 cut(s) 98
BccI CCATC 6 cut(s) 56, 173, 186, 435, 1084, 1225
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BclI TGATCA 1 cut(s) 118
BcnI CCSGG 1 cut(s) 1186
BcoDI GTCTC 2 cut(s) 151, 251
BfmI CTRYAG 1 cut(s) 891
BfoI RGCGCY 1 cut(s) 995
BfrI CTTAAG 1 cut(s) 284
BglI GCCNNNNNGGC 1 cut(s) 1340
BisI GCNGC 2 cut(s) 87, 488
BlpI GCTNAGC 1 cut(s) 1344
BlsI GCNGC 2 cut(s) 88, 489
Bme1390I CCNGG 1 cut(s) 1186
Bme18I GGWCC 1 cut(s) 695
BmgBI CACGTC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 695
BmiI GGNNCC 3 cut(s) 915, 993, 1086
BmrFI CCNGG 1 cut(s) 1186
BpiI GAAGAC 1 cut(s) 1308
Bpu1102I GCTNAGC 1 cut(s) 1344
Bpu14I TTCGAA 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 1186
BsaAI YACGTR 1 cut(s) 881
BsaHI GRCGYC 3 cut(s) 339, 462, 992
BsaJI CCNNGG 3 cut(s) 831, 1299, 1329
BsaWI WCCGGW 1 cut(s) 904
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 1185, 1245
Bse118I RCCGGY 1 cut(s) 904
Bse1I ACTGG 2 cut(s) 105, 1288
Bse21I CCTNAGG 1 cut(s) 996
Bse3DI GCAATG 2 cut(s) 81, 513
BseDI CCNNGG 3 cut(s) 831, 1299, 1329
BseGI GGATG 4 cut(s) 261, 357, 414, 1255
BseLI CCNNNNNNNGG 3 cut(s) 390, 1185, 1245
BseMI GCAATG 2 cut(s) 81, 513
BseMII CTCAG 4 cut(s) 720, 1010, 1024, 1358
BseNI ACTGG 2 cut(s) 105, 1288
BseRI GAGGAG 2 cut(s) 926, 1160
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 1123
Bsh1236I CGCG 2 cut(s) 71, 344
BshFI GGCC 5 cut(s) 830, 858, 1102, 1298, 1334
BshNI GGYRCC 2 cut(s) 991, 1084
BshTI ACCGGT 1 cut(s) 904
BsiSI CCGG 2 cut(s) 905, 1185
BslFI GGGAC 1 cut(s) 984
BslI CCNNNNNNNGG 3 cut(s) 390, 1185, 1245
BsmAI GTCTC 2 cut(s) 151, 251
BsmBI CGTCTC 2 cut(s) 151, 251
BsmFI GGGAC 1 cut(s) 984
BsnI GGCC 5 cut(s) 830, 858, 1102, 1298, 1334
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 4 cut(s) 118, 610, 681, 702
Bsp1720I GCTNAGC 1 cut(s) 1344
Bsp19I CCATGG 1 cut(s) 831
Bsp68I TCGCGA 1 cut(s) 344
BspACI CCGC 8 cut(s) 69, 93, 384, 488, 529, 1029, 1199, 1311
BspANI GGCC 5 cut(s) 830, 858, 1102, 1298, 1334
BspCNI CTCAG 4 cut(s) 719, 1009, 1023, 1357
BspFNI CGCG 2 cut(s) 71, 344
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 3 cut(s) 915, 993, 1086
BspT104I TTCGAA 1 cut(s) 234
BspT107I GGYRCC 2 cut(s) 991, 1084
BspTI CTTAAG 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 531
BsrDI GCAATG 2 cut(s) 81, 513
BsrFI RCCGGY 1 cut(s) 904
BsrI ACTGG 2 cut(s) 105, 1288
BssAI RCCGGY 1 cut(s) 904
BssECI CCNNGG 3 cut(s) 831, 1299, 1329
BssMI GATC 4 cut(s) 118, 610, 681, 702
BssNI GRCGYC 3 cut(s) 339, 462, 992
BssT1I CCWWGG 3 cut(s) 831, 1299, 1329
Bst4CI ACNGT 6 cut(s) 443, 654, 691, 699, 822, 1046
Bst6I CTCTTC 4 cut(s) 204, 615, 707, 891
BstACI GRCGYC 3 cut(s) 339, 462, 992
BstAFI CTTAAG 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 881
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 109, 485, 659
BstDEI CTNAG 4 cut(s) 706, 996, 1010, 1344
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 4 cut(s) 261, 357, 414, 1255
BstFNI CGCG 2 cut(s) 71, 344
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 2 cut(s) 73, 994
BstKTI GATC 4 cut(s) 121, 613, 684, 705
BstMAI GTCTC 2 cut(s) 151, 251
BstMBI GATC 4 cut(s) 118, 610, 681, 702
BstMWI GCNNNNNNNGC 8 cut(s) 68, 92, 149, 635, 644, 1331, 1340, 1354
BstNSI RCATGY 2 cut(s) 319, 487
BstSCI CCNGG 1 cut(s) 1184
BstSFI CTRYAG 1 cut(s) 891
BstSNI TACGTA 1 cut(s) 881
BstUI CGCG 2 cut(s) 71, 344
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 1308
Bsu36I CCTNAGG 1 cut(s) 996
BsuRI GGCC 5 cut(s) 830, 858, 1102, 1298, 1334
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 4 cut(s) 261, 357, 414, 1255
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 2 cut(s) 1042, 1077
BtuMI TCGCGA 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 109, 485, 659
CciI TCATGA 1 cut(s) 1015
CfoI GCGC 2 cut(s) 73, 994
Cfr10I RCCGGY 1 cut(s) 904
Cfr13I GGNCC 1 cut(s) 695
CpoI CGGWCCG 1 cut(s) 695
CseI GACGC 1 cut(s) 335
Csp6I GTAC 3 cut(s) 878, 1007, 1108
CspAI ACCGGT 1 cut(s) 904
CspI CGGWCCG 1 cut(s) 695
CviAII CATG 7 cut(s) 316, 484, 574, 734, 799, 832, 1016
CviQI GTAC 3 cut(s) 878, 1007, 1108
DdeI CTNAG 4 cut(s) 706, 996, 1010, 1344
DinI GGCGCC 1 cut(s) 993
DpnI GATC 4 cut(s) 120, 612, 683, 704
DpnII GATC 4 cut(s) 118, 610, 681, 702
EaeI YGGCCR 2 cut(s) 856, 1332
Eam1104I CTCTTC 4 cut(s) 204, 615, 707, 891
EarI CTCTTC 4 cut(s) 204, 615, 707, 891
Eco105I TACGTA 1 cut(s) 881
Eco130I CCWWGG 3 cut(s) 831, 1299, 1329
Eco24I GRGCYC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 695
Eco81I CCTNAGG 1 cut(s) 996
EcoT14I CCWWGG 3 cut(s) 831, 1299, 1329
EcoT38I GRGCYC 1 cut(s) 631
EgeI GGCGCC 1 cut(s) 993
EheI GGCGCC 1 cut(s) 993
ErhI CCWWGG 3 cut(s) 831, 1299, 1329
Esp3I CGTCTC 2 cut(s) 151, 251
FaeI CATG 7 cut(s) 319, 487, 577, 737, 802, 835, 1019
FaqI GGGAC 1 cut(s) 984
FatI CATG 7 cut(s) 315, 483, 573, 733, 798, 831, 1015
FauI CCCGC 2 cut(s) 1022, 1304
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 87, 488
FokI GGATG 4 cut(s) 248, 344, 401, 1262
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 2 cut(s) 87, 488
GlaI GCGC 2 cut(s) 72, 993
GluI GCNGC 2 cut(s) 87, 488
GsaI CCCAGC 1 cut(s) 1127
HaeII RGCGCY 1 cut(s) 995
HaeIII GGCC 5 cut(s) 830, 858, 1102, 1298, 1334
HapII CCGG 2 cut(s) 905, 1185
HgaI GACGC 1 cut(s) 335
HhaI GCGC 2 cut(s) 73, 994
Hin1I GRCGYC 3 cut(s) 339, 462, 992
Hin1II CATG 7 cut(s) 319, 487, 577, 737, 802, 835, 1019
Hin6I GCGC 2 cut(s) 71, 992
HinP1I GCGC 2 cut(s) 71, 992
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 7 cut(s) 394, 493, 591, 1019, 1039, 1175, 1235
HpaII CCGG 2 cut(s) 905, 1185
HphI GGTGA 4 cut(s) 23, 679, 991, 1180
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 5 cut(s) 451, 681, 695, 794, 1180
Hpy188III TCNNGA 6 cut(s) 203, 214, 343, 466, 1016, 1036
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 5 cut(s) 329, 341, 344, 464, 695
HpyAV CCTTC 6 cut(s) 48, 384, 433, 1147, 1288, 1301
HpyCH4III ACNGT 6 cut(s) 443, 654, 691, 699, 822, 1046
HpyCH4IV ACGT 5 cut(s) 244, 339, 462, 605, 880
HpyCH4V TGCA 2 cut(s) 86, 242
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 92, 149, 635, 644, 1331, 1340, 1354
HpyF3I CTNAG 4 cut(s) 706, 996, 1010, 1344
HpySE526I ACGT 5 cut(s) 244, 339, 462, 605, 880
Hsp92I GRCGYC 3 cut(s) 339, 462, 992
Hsp92II CATG 7 cut(s) 319, 487, 577, 737, 802, 835, 1019
HspAI GCGC 2 cut(s) 71, 992
KasI GGCGCC 1 cut(s) 991
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 4 cut(s) 118, 610, 681, 702
LmnI GCTCC 2 cut(s) 116, 913
Lsp1109I GCAGC 1 cut(s) 98
MaeII ACGT 5 cut(s) 244, 339, 462, 605, 880
MaeIII GTNAC 2 cut(s) 900, 1036
MalI GATC 4 cut(s) 120, 612, 683, 704
MbiI CCGCTC 1 cut(s) 531
MboI GATC 4 cut(s) 118, 610, 681, 702
MboII GAAGA 8 cut(s) 186, 191, 632, 676, 724, 908, 1308, 1316
MhlI GDGCHC 1 cut(s) 631
MlsI TGGCCA 2 cut(s) 858, 1334
MluCI AATT 1 cut(s) 538
MluNI TGGCCA 2 cut(s) 858, 1334
Mly113I GGCGCC 1 cut(s) 992
MlyI GAGTC 5 cut(s) 403, 1013, 1033, 1184, 1229
MmeI TCCRAC 3 cut(s) 673, 804, 1188
Mox20I TGGCCA 2 cut(s) 858, 1334
MscI TGGCCA 2 cut(s) 858, 1334
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 2 cut(s) 858, 1334
MspA1I CMGCKG 1 cut(s) 1348
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 905, 1185
MspR9I CCNGG 1 cut(s) 1186
MvnI CGCG 2 cut(s) 71, 344
MwoI GCNNNNNNNGC 8 cut(s) 68, 92, 149, 635, 644, 1331, 1340, 1354
NarI GGCGCC 1 cut(s) 992
NciI CCSGG 1 cut(s) 1186
NcoI CCATGG 1 cut(s) 831
NdeII GATC 4 cut(s) 118, 610, 681, 702
NlaIII CATG 7 cut(s) 319, 487, 577, 737, 802, 835, 1019
NlaIV GGNNCC 3 cut(s) 915, 993, 1086
NmeAIII GCCGAG 1 cut(s) 1138
NmuCI GTSAC 1 cut(s) 1036
NruI TCGCGA 1 cut(s) 344
NspI RCATGY 2 cut(s) 319, 487
NspV TTCGAA 1 cut(s) 234
PaeI GCATGC 1 cut(s) 487
PagI TCATGA 1 cut(s) 1015
PciI ACATGT 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 2 cut(s) 493, 591
PinAI ACCGGT 1 cut(s) 904
PkrI GCNGC 2 cut(s) 88, 489
PleI GAGTC 5 cut(s) 402, 1013, 1033, 1183, 1229
PluTI GGCGCC 1 cut(s) 995
PpsI GAGTC 5 cut(s) 402, 1013, 1033, 1183, 1229
Ppu21I YACGTR 1 cut(s) 881
PscI ACATGT 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 1123
PspN4I GGNNCC 3 cut(s) 915, 993, 1086
PspPI GGNCC 1 cut(s) 695
PvuII CAGCTG 1 cut(s) 1348
RruI TCGCGA 1 cut(s) 344
RsaI GTAC 3 cut(s) 879, 1008, 1109
RsaNI GTAC 3 cut(s) 878, 1007, 1108
RseI CAYNNNNRTG 1 cut(s) 803
Rsr2I CGGWCCG 1 cut(s) 695
RsrII CGGWCCG 1 cut(s) 695
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 87, 488
Sau3AI GATC 4 cut(s) 118, 610, 681, 702
Sau96I GGNCC 1 cut(s) 695
SchI GAGTC 5 cut(s) 403, 1013, 1033, 1184, 1229
ScrFI CCNGG 1 cut(s) 1186
SduI GDGCHC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 891
SfoI GGCGCC 1 cut(s) 993
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SnaBI TACGTA 1 cut(s) 881
SphI GCATGC 1 cut(s) 487
Sse9I AATT 1 cut(s) 538
SsiI CCGC 8 cut(s) 69, 93, 384, 488, 529, 1029, 1199, 1311
SspDI GGCGCC 1 cut(s) 991
SspI AATATT 1 cut(s) 933
StyD4I CCNGG 1 cut(s) 1184
StyI CCWWGG 3 cut(s) 831, 1299, 1329
TaaI ACNGT 6 cut(s) 443, 654, 691, 699, 822, 1046
TaiI ACGT 5 cut(s) 247, 342, 465, 608, 883
TaqI TCGA 5 cut(s) 213, 234, 312, 336, 560
TasI AATT 1 cut(s) 538
TauI GCSGC 1 cut(s) 490
TfiI GAWTC 2 cut(s) 493, 591
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 1049, 1077
TseFI GTSAC 1 cut(s) 1036
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 1036
TspDTI ATGAA 2 cut(s) 1166, 1266
TspRI CASTG 2 cut(s) 1049, 1077
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 695
XceI RCATGY 2 cut(s) 319, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
ZraI GACGTC 2 cut(s) 340, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.