Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002368

Physical Location & Seq

Genomic Coordinates Reverse (-)

34459260 .. 34459916

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1281000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTGGACTCACAGCCAAGTGGAAGCGTGGTCAGTTGAAGGAAATTGCGATTGGGTTGGAGAATAGTGGGCACAGATTTTTGTGGGTGGTCCGTAATCCTCCAGCCCAAAATCAAATTGGGCTGGCTATTAAAGAGTCCGATCCGGAATTGAAATCTTTGCTTCCGGACGGGTTCTTGGATCGGACTAAGGGTCGGGGTCTCGTGGTCAAGTCATGGGCCCCGCAAGTGGCAGTGTTGAATCACAACTCGGTGGGTGGGTTTGTGAGTCATTGCGGGTGGAACTCGGTGTTGGAATCGGTGTGTGCCGGTGTGCCGATTGTGGCTTGGCCGCTCTACGCGGAGCAGAGATTCAATCGAGTGGTTTTGGTGGAGGAGATTAAGATTGCTATGCCGATGAACGAGTCAGAAGACGGGTTTGTGAGAGCAGCGGAGGTGGAGAAGCGAGTTACGGAGTTGATGGACTCGGAGGAGGGCGAGTCGATCAGGAAGCGTACAAAGGATTTGCAAAACGATGCCCATGCAGCATTGGGTGAGACCGGGTCGTCTCGGGTTGCATTTACTAAACTACTTGAATTCTGGGGCAAAACCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

199

Amino Acids

21.91

Weight (kDa)

6.92

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	12 - 122	8.4e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16520 AT3G16520 AT3G16520
fragaria_vesca	FvH4_1g30110 FvH4_7g30500 FvH4_7g30540
malus_domestica	MD01G1210600.v1.1 MD01G1210700.v1.1 MD07G1280800.v1.1 MD07G1281000.v1.1
prunus_persica	Prupe.2G303000_v2.0.a1
pyrus_communis	pycom01g22110 pycom07g25550
rosa_chinensis	RchiOBHm_Chr1g0378901 RchiOBHm_Chr1g0378931 RchiOBHm_Chr1g0378941
rosa_laevigata	RLG00000026407 RLG00000026408 RLG00000026410
rosa_multiflora	Rmu_sc0000556.1_g000032 Rmu_sc0000556.1_g000035 Rmu_sc0006761.1_g000001 Rmu_sc0006761.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280260 Rroxscaffold_4G00280270 Rroxscaffold_4G00280280
rosa_rugosa	Rorug01G0411000 Rorug01G0411500 Rorug07G0124400
rosa_samantha	Rh1AG433800 Rh1BG391400 Rh1BG391600 Rh1CG404200 Rh1CG404400 Rh1DG422600 Rh1DG422800 Rh7BG250700
rosa_wichuraiana	Rw0G000080 Rw0G000090 Rw1G037860 Rw1G037880 Rw1G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	544
AccBSI	CCGCTC	1 cut(s)	334
AccII	CGCG	1 cut(s)	341
AccIII	TCCGGA	2 cut(s)	145, 166
AciI	CCGC	5 cut(s)	224, 276, 332, 341, 431
AclWI	GGATC	2 cut(s)	137, 189
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	1 cut(s)	575
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	40, 154, 241, 355, 575
AhdI	GACNNNNNGTC	1 cut(s)	192
AjuI	GAANNNNNNNTTGG	4 cut(s)	36, 68, 275, 307
Alw26I	GTCTC	3 cut(s)	206, 530, 552
AlwI	GGATC	2 cut(s)	137, 189
Ama87I	CYCGRG	1 cut(s)	549
Aor13HI	TCCGGA	2 cut(s)	145, 166
AoxI	GGCC	2 cut(s)	219, 329
ApaI	GGGCCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	428, 524
ApoI	RAATTY	1 cut(s)	575
AspS9I	GGNCC	3 cut(s)	91, 219, 220
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	549
AvaII	GGWCC	1 cut(s)	91
BaeGI	GKGCMC	2 cut(s)	75, 223
BanII	GRGCYC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	440, 536
BccI	CCATC	1 cut(s)	454
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	3 cut(s)	206, 530, 552
BisI	GCNGC	3 cut(s)	332, 429, 525
BlsI	GCNGC	3 cut(s)	333, 430, 526
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	91
BmeRI	GACNNNNNGTC	1 cut(s)	192
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	3 cut(s)	91, 219, 220
BmiI	GGNNCC	2 cut(s)	221, 222
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	541
BsaI	GGTCTC	2 cut(s)	206, 530
BsaWI	WCCGGW	2 cut(s)	145, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	271
BseAI	TCCGGA	2 cut(s)	145, 166
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	271
BseRI	GAGGAG	2 cut(s)	389, 485
BseSI	GKGCMC	2 cut(s)	75, 223
BseXI	GCAGC	2 cut(s)	440, 536
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	221, 331
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	4 cut(s)	146, 167, 309, 540
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	3 cut(s)	206, 530, 552
BsmBI	CGTCTC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	221, 331
Bso31I	GGTCTC	2 cut(s)	206, 530
BsoBI	CYCGRG	1 cut(s)	549
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	75, 223
Bsp13I	TCCGGA	2 cut(s)	145, 166
Bsp143I	GATC	3 cut(s)	142, 181, 483
BspACI	CCGC	5 cut(s)	224, 276, 332, 341, 431
BspANI	GGCC	2 cut(s)	221, 331
BspEI	TCCGGA	2 cut(s)	145, 166
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	221, 222
BspPI	GGATC	2 cut(s)	137, 189
BspTNI	GGTCTC	2 cut(s)	206, 530
BsrBI	CCGCTC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssMI	GATC	3 cut(s)	142, 181, 483
BssSI	CACGAG	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	341
BstKTI	GATC	3 cut(s)	145, 184, 486
BstMAI	GTCTC	3 cut(s)	206, 530, 552
BstMBI	GATC	3 cut(s)	142, 181, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	539
BstSLI	GKGCMC	2 cut(s)	75, 223
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	440, 536
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	221, 331
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	91, 219, 220
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	2 cut(s)	216, 521
CviJI	RGCY	8 cut(s)	5, 17, 107, 124, 128, 221, 326, 331
CviKI_1	RGCY	8 cut(s)	5, 17, 107, 124, 128, 221, 326, 331
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	144, 183, 485
DpnII	GATC	3 cut(s)	142, 181, 483
DrdI	GACNNNNNNGTC	1 cut(s)	544
DriI	GACNNNNNGTC	1 cut(s)	192
DseDI	GACNNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	329
Eam1105I	GACNNNNNGTC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	2 cut(s)	206, 530
Eco47I	GGWCC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	2 cut(s)	219, 524
FaiI	YATR	3 cut(s)	217, 392, 522
FatI	CATG	2 cut(s)	215, 520
FauI	CCCGC	2 cut(s)	231, 269
Fnu4HI	GCNGC	3 cut(s)	332, 429, 525
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	332, 429, 525
GluI	GCNGC	3 cut(s)	332, 429, 525
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	221, 331
HapII	CCGG	4 cut(s)	146, 167, 309, 540
Hin1II	CATG	2 cut(s)	219, 524
HinfI	GANTC	9 cut(s)	9, 137, 241, 268, 296, 351, 404, 464, 479
HpaII	CCGG	4 cut(s)	146, 167, 309, 540
HphI	GGTGA	1 cut(s)	545
Hpy188I	TCNGA	4 cut(s)	142, 186, 409, 469
Hpy188III	TCNNGA	3 cut(s)	146, 167, 487
HpyAV	CCTTC	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	508, 524, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	219, 524
Kpn2I	TCCGGA	2 cut(s)	145, 166
Kzo9I	GATC	3 cut(s)	142, 181, 483
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	8 cut(s)	110, 117, 159, 180, 322, 472, 553, 565
Lsp1109I	GCAGC	2 cut(s)	440, 536
LweI	GCATC	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	3 cut(s)	144, 183, 485
MbiI	CCGCTC	1 cut(s)	334
MboI	GATC	3 cut(s)	142, 181, 483
MboII	GAAGA	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	75, 223
MluCI	AATT	4 cut(s)	45, 117, 149, 575
MlyI	GAGTC	6 cut(s)	3, 146, 277, 413, 458, 488
MmeI	TCCRAC	2 cut(s)	39, 273
MnlI	CCTC	5 cut(s)	111, 367, 427, 463, 466
MroI	TCCGGA	2 cut(s)	145, 166
MseI	TTAA	2 cut(s)	132, 381
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	4 cut(s)	146, 167, 309, 540
MspR9I	CCNGG	1 cut(s)	541
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	524
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	3 cut(s)	142, 181, 483
NlaIII	CATG	2 cut(s)	219, 524
NlaIV	GGNNCC	2 cut(s)	221, 222
PfeI	GAWTC	3 cut(s)	241, 296, 351
PflFI	GACNNNGTC	1 cut(s)	541
PkrI	GCNGC	3 cut(s)	333, 430, 526
PleI	GAGTC	6 cut(s)	3, 145, 276, 412, 458, 487
PpsI	GAGTC	6 cut(s)	3, 145, 276, 412, 458, 487
PspN4I	GGNNCC	2 cut(s)	221, 222
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	3 cut(s)	91, 219, 220
PsyI	GACNNNGTC	1 cut(s)	541
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	132, 381
SatI	GCNGC	3 cut(s)	332, 429, 525
Sau3AI	GATC	3 cut(s)	142, 181, 483
Sau96I	GGNCC	3 cut(s)	91, 219, 220
SchI	GAGTC	6 cut(s)	3, 146, 277, 413, 458, 488
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	2 cut(s)	75, 223
SetI	ASST	2 cut(s)	438, 593
SfaNI	GCATC	1 cut(s)	505
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	4 cut(s)	45, 117, 149, 575
SsiI	CCGC	5 cut(s)	224, 276, 332, 341, 431
StyD4I	CCNGG	1 cut(s)	539
TaqI	TCGA	2 cut(s)	358, 482
TasI	AATT	4 cut(s)	45, 117, 149, 575
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	3 cut(s)	241, 296, 351
Tru1I	TTAA	2 cut(s)	132, 381
Tru9I	TTAA	2 cut(s)	132, 381
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	2 cut(s)	428, 524
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	2 cut(s)	83, 467
TspRI	CASTG	1 cut(s)	240
Tth111I	GACNNNGTC	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.