FvH4_7g30500

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002368
Physical Location & Seq
Forward (+)
22191921 .. 22193620
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30500.t1

Sequence Viewer

Length: 1458 bp
ATGGATTCCAATCAGGCTATAGTTTTATACCCATCACCACCTATAGGCCACTTAGTTTCTATGGTCGAGTTAGGCAAACTCATACTTACTTGCCATCCTTCACTTAGCATCCACATCCTCCTTGCCACCCCACCTTACCGAGCCGACACCACCGCCTCATACATCGCCTCCGTCTCCGGCACCACATCCTCCATCATCTTCCACCGCCTCCCCACTGTCTCTCTCCCTCCCTCTATAACTTCCGCCTCACGCAACCATGAAACCCTAACCTTTGAAGTTCTCCGCCAAAGTAACCCCCACGTCCACCAAGCCCTTGTTTCCATTTCCAACACTTTCACTGTCCAAGCTTTCGTCATGGACTTCTTCTGCGGCCTCGGACTTTCGGTTGCGACTGAGCTGAACATTCCTGGTTACTTTTACTTAACTTCTGGTGCAGGGTTTCTAGCTTCGTTTCTTTACCTTCCTACCATACACAAAAACACTGACAAGAGCATCAAAGACCTTGACACCCTTCTCTCTATTCCAGGAGTTCCACCACTACATTCCTCTGATATGCCAAAACCATTTCTTGAACGCAACGACCCGGCTTATGAATGCTTCCTAGAGAACGCAACTTACTTGCCCAAATCAGCTGGGATTATTATAAACACATTTGAATCACTTGAAGCAAGAACTCTCAGAGCAATATCAGATGGACAATGCTTGGCTGACGATGACGATACTACCATGCCGCCCATCTACTCCATCGGGCCGCTGATCTTTTCTCAGAGAGGTGGAAAAGGTCAAGATCTTGATGATGTGCATGAGTGTTTGAAGTGGCTGGATTCACAGCCAAGAGGAAGTGTGGTGTTCCTTTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGAGGAAATAGCTGTGGGGCTAGAAAGGAGTGGCCAAAGGTTCTTGTGGGTGGTCCGTAATCCACCGTCTAGTAATGAAAGTGTGGCCATTGCGGGCCAATCTGACCCTGACTTGAATAATTTGCTTCCTGATGGTTTTTTGGGTAGAACGAAAGATAGAGGACTTGTGGTGAAGTCATGGGCGCCACAAGTGGATGTGTTGAATCATAATTCAATAGGTGGATTTGTGAGTCACTGTGGATGGAACTCGGTATTGGAGGCGGTGTGTGCTGGGGTGCCAATGGTGGCTTGGCCACTCTATGCAGAGCAAAGGATCAATAGGGTTGTGTTGGTGGAGGAAATAAAGATTGCTTTGCCGATGAACGAGTCAAAAAACGGGTTTGTGGGTGCATATGAGGTGGAGAATCGAGTTAGGGAGTTGATGGAGTCGGAAAAAGGAGAGTCTATCAGGAAGAGGATCGAGGCTTTGAAGAGTGATGCAAATGCTGCATTGAGTGAAGGTGGGACATCTAAGGTTGCATTAGTTAAACTGATTGAATCATGGAACCAAGTCAAGGCAGGGTGA

Protein Analysis

486

Amino Acids

52.94

Weight (kDa)

5.43

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 408 4.3e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AccB1I GGYRCC 3 cut(s) 179, 1075, 1168
AciI CCGC 9 cut(s) 153, 205, 243, 283, 369, 731, 752, 986, 1154
AclWI GGATC 2 cut(s) 1214, 1358
AcoI YGGCCR 3 cut(s) 925, 978, 1184
AcyI GRCGYC 1 cut(s) 1076
AfiI CCNNNNNNNGG 2 cut(s) 44, 1447
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 2 cut(s) 406, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
AluBI AGCT 6 cut(s) 347, 397, 446, 632, 867, 905
AluI AGCT 6 cut(s) 347, 397, 446, 632, 867, 905
Alw26I GTCTC 2 cut(s) 178, 223
AlwI GGATC 2 cut(s) 1214, 1358
AoxI GGCC 7 cut(s) 46, 370, 749, 925, 978, 988, 1184
ApeKI GCWGC 1 cut(s) 1379
AspLEI GCGC 1 cut(s) 1078
AspS9I GGNCC 3 cut(s) 749, 946, 988
AsuC2I CCSGG 1 cut(s) 584
AsuHPI GGTGA 2 cut(s) 27, 1075
AvaII GGWCC 1 cut(s) 946
BalI TGGCCA 3 cut(s) 927, 980, 1186
BanI GGYRCC 3 cut(s) 179, 1075, 1168
BbvI GCAGC 1 cut(s) 1366
BccI CCATC 9 cut(s) 40, 102, 200, 686, 743, 752, 1019, 1128, 1309
BciT130I CCWGG 2 cut(s) 408, 525
BcnI CCSGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 178, 223
BfaI CTAG 4 cut(s) 443, 602, 914, 963
BfmI CTRYAG 2 cut(s) 18, 42
BfoI RGCGCY 1 cut(s) 1079
BglII AGATCT 1 cut(s) 787
BisI GCNGC 4 cut(s) 370, 731, 752, 1380
BlsI GCNGC 4 cut(s) 371, 732, 753, 1381
Bme1390I CCNGG 3 cut(s) 408, 525, 584
Bme18I GGWCC 1 cut(s) 946
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 749, 946, 988
BmiI GGNNCC 4 cut(s) 181, 1077, 1170, 1439
BmrFI CCNGG 3 cut(s) 408, 525, 584
BmsI GCATC 3 cut(s) 117, 501, 1360
Bpu10I CCTNAGC 1 cut(s) 868
BpuMI CCSGG 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 1076
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 1142, 1172
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 1447
Bse3DI GCAATG 1 cut(s) 981
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 408, 525
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 6 cut(s) 94, 108, 114, 185, 1093, 1139
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 44, 1447
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 3 cut(s) 384, 691, 779
BseXI GCAGC 1 cut(s) 1366
BseYI CCCAGC 2 cut(s) 632, 1163
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 7 cut(s) 48, 372, 751, 927, 980, 990, 1186
BshNI GGYRCC 3 cut(s) 179, 1075, 1168
BsiSI CCGG 2 cut(s) 177, 584
BslFI GGGAC 1 cut(s) 1411
BslI CCNNNNNNNGG 2 cut(s) 44, 1447
BsmAI GTCTC 2 cut(s) 178, 223
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 1411
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 7 cut(s) 48, 372, 751, 927, 980, 990, 1186
Bsp143I GATC 4 cut(s) 756, 787, 1206, 1350
BspACI CCGC 9 cut(s) 153, 205, 243, 283, 369, 731, 752, 986, 1154
BspANI GGCC 7 cut(s) 48, 372, 751, 927, 980, 990, 1186
BspCNI CTCAG 3 cut(s) 385, 690, 778
BspLI GGNNCC 4 cut(s) 181, 1077, 1170, 1439
BspPI GGATC 2 cut(s) 1214, 1358
BspT107I GGYRCC 3 cut(s) 179, 1075, 1168
BsrDI GCAATG 1 cut(s) 981
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 4 cut(s) 756, 787, 1206, 1350
BssNI GRCGYC 1 cut(s) 1076
Bst2UI CCWGG 2 cut(s) 408, 525
Bst4CI ACNGT 4 cut(s) 217, 340, 960, 1130
Bst6I CTCTTC 2 cut(s) 1340, 1358
BstACI GRCGYC 1 cut(s) 1076
BstAPI GCANNNNNTGC 1 cut(s) 1379
BstC8I GCNNGC 1 cut(s) 988
BstDEI CTNAG 7 cut(s) 52, 104, 393, 677, 765, 868, 1404
BstF5I GGATG 6 cut(s) 94, 108, 114, 185, 1093, 1139
BstH2I RGCGCY 1 cut(s) 1079
BstHHI GCGC 1 cut(s) 1078
BstKTI GATC 4 cut(s) 759, 790, 1209, 1353
BstMAI GTCTC 2 cut(s) 178, 223
BstMBI GATC 4 cut(s) 756, 787, 1206, 1350
BstMWI GCNNNNNNNGC 2 cut(s) 1160, 1379
BstNI CCWGG 2 cut(s) 408, 525
BstSCI CCNGG 3 cut(s) 406, 523, 582
BstSFI CTRYAG 2 cut(s) 18, 42
BstV1I GCAGC 1 cut(s) 1366
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
BsuRI GGCC 7 cut(s) 48, 372, 751, 927, 980, 990, 1186
BtgZI GCGATG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 6 cut(s) 94, 108, 114, 185, 1093, 1139
BtsIMutI CAGTG 4 cut(s) 213, 336, 480, 1126
Cac8I GCNNGC 1 cut(s) 988
CfoI GCGC 1 cut(s) 1078
Cfr13I GGNCC 3 cut(s) 749, 946, 988
CviAII CATG 6 cut(s) 257, 355, 727, 803, 1071, 1434
DdeI CTNAG 7 cut(s) 52, 104, 393, 677, 765, 868, 1404
DinI GGCGCC 1 cut(s) 1077
DpnI GATC 4 cut(s) 758, 789, 1208, 1352
DpnII GATC 4 cut(s) 756, 787, 1206, 1350
EaeI YGGCCR 3 cut(s) 925, 978, 1184
Eam1104I CTCTTC 2 cut(s) 1340, 1358
EarI CTCTTC 2 cut(s) 1340, 1358
EciI GGCGGA 2 cut(s) 232, 272
Eco47I GGWCC 1 cut(s) 946
EcoRII CCWGG 2 cut(s) 406, 523
EgeI GGCGCC 1 cut(s) 1077
EheI GGCGCC 1 cut(s) 1077
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 6 cut(s) 260, 358, 730, 806, 1074, 1437
FaqI GGGAC 1 cut(s) 1411
FatI CATG 6 cut(s) 256, 354, 726, 802, 1070, 1433
FauI CCCGC 1 cut(s) 979
FauNDI CATATG 1 cut(s) 1285
Fnu4HI GCNGC 4 cut(s) 370, 731, 752, 1380
FokI GGATG 6 cut(s) 81, 95, 101, 172, 1100, 1146
Fsp4HI GCNGC 4 cut(s) 370, 731, 752, 1380
FspBI CTAG 4 cut(s) 443, 602, 914, 963
GlaI GCGC 1 cut(s) 1077
GluI GCNGC 4 cut(s) 370, 731, 752, 1380
GsaI CCCAGC 2 cut(s) 636, 1167
HaeII RGCGCY 1 cut(s) 1079
HaeIII GGCC 7 cut(s) 48, 372, 751, 927, 980, 990, 1186
HapII CCGG 2 cut(s) 177, 584
HhaI GCGC 1 cut(s) 1078
Hin1I GRCGYC 1 cut(s) 1076
Hin1II CATG 6 cut(s) 260, 358, 730, 806, 1074, 1437
Hin6I GCGC 1 cut(s) 1076
HinP1I GCGC 1 cut(s) 1076
HindIII AAGCTT 2 cut(s) 345, 865
HpaII CCGG 2 cut(s) 177, 584
HphI GGTGA 2 cut(s) 27, 1075
Hpy166II GTNNAC 2 cut(s) 304, 879
Hpy188I TCNGA 7 cut(s) 377, 550, 680, 691, 768, 997, 1324
Hpy188III TCNNGA 5 cut(s) 569, 785, 791, 1022, 1342
Hpy8I GTNNAC 2 cut(s) 304, 879
HpyAV CCTTC 4 cut(s) 108, 470, 521, 1385
HpyCH4III ACNGT 4 cut(s) 217, 340, 960, 1130
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 7 cut(s) 434, 802, 1196, 1283, 1373, 1382, 1412
HpyF10VI GCNNNNNNNGC 2 cut(s) 1160, 1379
HpyF3I CTNAG 7 cut(s) 52, 104, 393, 677, 765, 868, 1404
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 1076
Hsp92II CATG 6 cut(s) 260, 358, 730, 806, 1074, 1437
HspAI GCGC 1 cut(s) 1076
KasI GGCGCC 1 cut(s) 1075
Kzo9I GATC 4 cut(s) 756, 787, 1206, 1350
LmnI GCTCC 1 cut(s) 886
Lsp1109I GCAGC 1 cut(s) 1366
LweI GCATC 3 cut(s) 117, 501, 1360
MaeI CTAG 4 cut(s) 443, 602, 914, 963
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 3 cut(s) 290, 410, 1124
MalI GATC 4 cut(s) 758, 789, 1208, 1352
MboI GATC 4 cut(s) 756, 787, 1206, 1350
MboII GAAGA 4 cut(s) 190, 355, 1357, 1375
MflI RGATCY 1 cut(s) 787
MlsI TGGCCA 3 cut(s) 927, 980, 1186
MluCI AATT 2 cut(s) 1012, 1102
MluNI TGGCCA 3 cut(s) 927, 980, 1186
Mly113I GGCGCC 1 cut(s) 1076
MlyI GAGTC 4 cut(s) 1132, 1268, 1328, 1343
MmeI TCCRAC 3 cut(s) 351, 873, 1302
Mox20I TGGCCA 3 cut(s) 927, 980, 1186
MscI TGGCCA 3 cut(s) 927, 980, 1186
MseI TTAA 2 cut(s) 422, 1419
Msp20I TGGCCA 3 cut(s) 927, 980, 1186
MspA1I CMGCKG 2 cut(s) 632, 754
MspI CCGG 2 cut(s) 177, 584
MspR9I CCNGG 3 cut(s) 408, 525, 584
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 2 cut(s) 408, 525
MwoI GCNNNNNNNGC 2 cut(s) 1160, 1379
NarI GGCGCC 1 cut(s) 1076
NciI CCSGG 1 cut(s) 584
NdeI CATATG 1 cut(s) 1285
NdeII GATC 4 cut(s) 756, 787, 1206, 1350
NlaIII CATG 6 cut(s) 260, 358, 730, 806, 1074, 1437
NlaIV GGNNCC 4 cut(s) 181, 1077, 1170, 1439
NmuCI GTSAC 1 cut(s) 1124
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 6 cut(s) 5, 656, 824, 1096, 1297, 1430
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 4 cut(s) 371, 732, 753, 1381
PleI GAGTC 4 cut(s) 1131, 1267, 1327, 1342
PluTI GGCGCC 1 cut(s) 1079
PpsI GAGTC 4 cut(s) 1131, 1267, 1327, 1342
PsiI TTATAA 1 cut(s) 644
Psp6I CCWGG 2 cut(s) 406, 523
PspFI CCCAGC 2 cut(s) 632, 1163
PspGI CCWGG 2 cut(s) 406, 523
PspN4I GGNNCC 4 cut(s) 181, 1077, 1170, 1439
PspPI GGNCC 3 cut(s) 749, 946, 988
PsrI GAACNNNNNNTAC 2 cut(s) 599, 631
PsuI RGATCY 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 632
SaqAI TTAA 2 cut(s) 422, 1419
SatI GCNGC 4 cut(s) 370, 731, 752, 1380
Sau3AI GATC 4 cut(s) 756, 787, 1206, 1350
Sau96I GGNCC 3 cut(s) 749, 946, 988
SchI GAGTC 4 cut(s) 1132, 1268, 1328, 1343
ScrFI CCNGG 3 cut(s) 408, 525, 584
SfaNI GCATC 3 cut(s) 117, 501, 1360
SfcI CTRYAG 2 cut(s) 18, 42
SfoI GGCGCC 1 cut(s) 1077
SinI GGWCC 1 cut(s) 946
Sse9I AATT 2 cut(s) 1012, 1102
SsiI CCGC 9 cut(s) 153, 205, 243, 283, 369, 731, 752, 986, 1154
SspDI GGCGCC 1 cut(s) 1075
SspMI CTAG 4 cut(s) 443, 602, 914, 963
StyD4I CCNGG 3 cut(s) 406, 523, 582
TaaI ACNGT 4 cut(s) 217, 340, 960, 1130
TaiI ACGT 1 cut(s) 303
TaqI TCGA 3 cut(s) 66, 1300, 1353
TasI AATT 2 cut(s) 1012, 1102
TauI GCSGC 3 cut(s) 372, 733, 754
TfiI GAWTC 6 cut(s) 5, 656, 824, 1096, 1297, 1430
Tru1I TTAA 2 cut(s) 422, 1419
Tru9I TTAA 2 cut(s) 422, 1419
TscAI CASTG 4 cut(s) 220, 343, 487, 1133
TseFI GTSAC 1 cut(s) 1124
TseI GCWGC 1 cut(s) 1379
Tsp45I GTSAC 1 cut(s) 1124
TspDTI ATGAA 4 cut(s) 273, 606, 984, 1268
TspGWI ACGGA 2 cut(s) 160, 938
TspRI CASTG 4 cut(s) 220, 343, 487, 1133
VpaK11BI GGWCC 1 cut(s) 946
XcmI CCANNNNNNNNNTGG 1 cut(s) 1179
XspI CTAG 4 cut(s) 443, 602, 914, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.