AT3G16520

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002368
Physical Location & Seq
Reverse (-)
5618408 .. 5620969
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16520.1

Sequence Viewer

Length: 1356 bp
ATGGGTGAAGAAGCTATAGTTCTGTATCCTGCACCACCAATAGGTCACTTAGTGTCCATGGTTGAGTTAGGTAAAACCATCCTCTCCAAAAACCCATCTCTCTCCATCCACATTATCTTAGTTCCACCGCCTTATCAGCCGGAATCAACCGCCACTTACATCTCCTCCGTCTCCTCCTCCTTCCCTTCAATAACCTTCCACCATCTTCCCGCCGTCACACCGTACTCCTCCTCCTCCACCTCTCGCCACCACCACGAATCTCTCCTCCTAGAGATCCTCTGTTTTAGCAACCCAAGTGTCCACCGAACTCTTTTCTCACTCTCTCGGAATTTCAATGTCCGAGCAATGATCATCGATTTCTTCTGCACCGCCGTTTTAGACATCACCGCTGACTTCACGTTCCCGGTTTACTTCTTCTACACCTCTGGAGCCGCATGTCTCGCCTTTTCCTTCTATCTCCCGACCATCGACGAAACAACCCCCGGAAAAAACCTCAAAGACATTCCTACAGTTCATATCCCCGGCGTTCCTCCGATGAAGGGCTCCGATATGCCTAAGGCGGTGCTCGAACGAGACGATGAGGTCTACGATGTTTTTATAATGTTCGGTAAACAGCTCTCGAAGTCGTCAGGGATTATTATCAATACGTTTGATGCTTTAGAAAACAGAGCCATCAAGGCCATAACAGAGGAGCTCTGTTTTCGCAATATTTATCCAATTGGACCGCTCATTGTAAACGGAAGAATCGAAGATAGAAACGACAACAAGGCAGTTTCTTGTCTCAATTGGCTGGATTCGCAGCCGGAAAAGAGTGTTGTGTTTCTCTGTTTTGGAAGCTTAGGTTTGTTCTCAAAAGAACAGGTGATAGAGATTGCTGTTGGTTTAGAGAAAAGTGGGCAGAGATTCTTGTGGGTGGTCCGTAATCCACCCGAGTTAGAAAAGACAGAACTGGATTTGAAATCACTCTTACCAGAAGGATTCTTAAGCCGAACCGAAGACAAAGGGATGGTCGTGAAATCATGGGCTCCGCAAGTTCCGGTTCTGAATCATAAAGCAGTCGGGGGATTCGTCACTCATTGCGGTTGGAATTCAATTCTTGAAGCTGTTTGTGCTGGTGTGCCGATGGTGGCTTGGCCGTTGTACGCTGAGCAGAGGTTTAATAGAGTGATGATTGTGGATGAGATCAAGATTGCGATTTCGATGAATGAATCAGAGACGGGTTTCGTGAGCTCTACAGAGGTGGAGAAACGAGTCCAAGAGATAATTGGGGAGTGTCCGGTTAGGGAGCGAACCATGGCTATGAAGAACGCAGCCGAATTAGCCTTGACAGAAACTGATTGCAATTCCGATGGATGA

Protein Analysis

451

Amino Acids

50.0

Weight (kDa)

5.32

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 255 - 433 5.6e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AasI GACNNNNNNGTC 1 cut(s) 581
AccBSI CCGCTC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 585
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 1133
AcsI RAATTY 2 cut(s) 328, 1087
AdeI CACNNNGTG 1 cut(s) 52
AfaI GTAC 2 cut(s) 224, 1142
AfiI CCNNNNNNNGG 2 cut(s) 41, 539
AflII CTTAAG 1 cut(s) 982
AgsI TTSAA 5 cut(s) 189, 334, 958, 1092, 1100
AluBI AGCT 6 cut(s) 14, 616, 694, 837, 1103, 1230
AluI AGCT 6 cut(s) 14, 616, 694, 837, 1103, 1230
Alw21I GWGCWC 3 cut(s) 567, 696, 1232
Alw26I GTCTC 5 cut(s) 175, 443, 567, 785, 1208
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 1334
Ama87I CYCGRG 1 cut(s) 929
AoxI GGCC 2 cut(s) 678, 1133
ApeKI GCWGC 2 cut(s) 799, 1310
ApoI RAATTY 2 cut(s) 328, 1087
ArsI GACNNNNNNTTYG 2 cut(s) 993, 1025
AspS9I GGNCC 2 cut(s) 722, 916
AsuC2I CCSGG 3 cut(s) 404, 483, 522
AsuHPI GGTGA 3 cut(s) 17, 376, 874
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 2 cut(s) 722, 916
AxyI CCTNAGG 1 cut(s) 555
BanII GRGCYC 4 cut(s) 545, 696, 1027, 1232
BbsI GAAGAC 1 cut(s) 1002
Bbv12I GWGCWC 3 cut(s) 567, 696, 1232
BbvI GCAGC 2 cut(s) 811, 1322
BccI CCATC 9 cut(s) 86, 103, 113, 210, 473, 680, 1000, 1117, 1343
BceAI ACGGC 3 cut(s) 197, 356, 1120
BciVI GTATCC 1 cut(s) 36
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 3 cut(s) 404, 483, 522
BcoDI GTCTC 5 cut(s) 175, 443, 567, 785, 1208
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 3 cut(s) 15, 507, 1233
BfrI CTTAAG 1 cut(s) 982
BfuI GTATCC 1 cut(s) 36
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 3 cut(s) 432, 800, 1311
BlpI GCTNAGC 1 cut(s) 1146
BlsI GCNGC 3 cut(s) 433, 801, 1312
Bme1390I CCNGG 3 cut(s) 404, 483, 522
Bme18I GGWCC 2 cut(s) 722, 916
BmeT110I CYCGRG 1 cut(s) 929
BmgT120I GGNCC 2 cut(s) 722, 916
BmiI GGNNCC 3 cut(s) 430, 544, 1026
BmrFI CCNGG 3 cut(s) 404, 483, 522
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 838
Bpu1102I GCTNAGC 1 cut(s) 1146
BpuMI CCSGG 3 cut(s) 404, 483, 522
Bsa29I ATCGAT 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 638
BsaJI CCNNGG 4 cut(s) 57, 481, 520, 1293
BsaWI WCCGGW 2 cut(s) 1036, 1276
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 539
Bse1I ACTGG 1 cut(s) 954
Bse21I CCTNAGG 1 cut(s) 555
Bse3DI GCAATG 2 cut(s) 351, 1075
Bse8I GATNNNNATC 1 cut(s) 638
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 57, 481, 520, 1293
BseGI GGATG 4 cut(s) 78, 105, 1011, 1183
BseJI GATNNNNATC 1 cut(s) 638
BseLI CCNNNNNNNGG 2 cut(s) 41, 539
BseMI GCAATG 2 cut(s) 351, 1075
BseMII CTCAG 1 cut(s) 1137
BseNI ACTGG 1 cut(s) 954
BseRI GAGGAG 8 cut(s) 154, 163, 166, 217, 220, 223, 254, 704
BseXI GCAGC 2 cut(s) 811, 1322
BsgI GTGCAG 2 cut(s) 15, 349
BshFI GGCC 2 cut(s) 680, 1135
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 3 cut(s) 567, 696, 1232
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 7 cut(s) 140, 404, 483, 522, 803, 1037, 1277
BslI CCNNNNNNNGG 2 cut(s) 41, 539
BsmAI GTCTC 5 cut(s) 175, 443, 567, 785, 1208
BsmBI CGTCTC 3 cut(s) 175, 567, 1208
BsnI GGCC 2 cut(s) 680, 1135
BsoBI CYCGRG 1 cut(s) 929
Bsp1286I GDGCHC 5 cut(s) 545, 567, 696, 1027, 1232
Bsp143I GATC 3 cut(s) 273, 348, 1182
Bsp1720I GCTNAGC 1 cut(s) 1146
Bsp19I CCATGG 2 cut(s) 57, 1293
BspANI GGCC 2 cut(s) 680, 1135
BspCNI CTCAG 1 cut(s) 1138
BspDI ATCGAT 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 430, 544, 1026
BspPI GGATC 1 cut(s) 268
BspTI CTTAAG 1 cut(s) 982
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 2 cut(s) 351, 1075
BsrI ACTGG 1 cut(s) 954
BssECI CCNNGG 4 cut(s) 57, 481, 520, 1293
BssMI GATC 3 cut(s) 273, 348, 1182
BssT1I CCWWGG 2 cut(s) 57, 1293
Bst4CI ACNGT 2 cut(s) 222, 511
BstAFI CTTAAG 1 cut(s) 982
BstDEI CTNAG 5 cut(s) 49, 118, 555, 838, 1146
BstDSI CCRYGG 2 cut(s) 57, 1293
BstF5I GGATG 4 cut(s) 78, 105, 1011, 1183
BstKTI GATC 3 cut(s) 276, 351, 1185
BstMAI GTCTC 5 cut(s) 175, 443, 567, 785, 1208
BstMBI GATC 3 cut(s) 273, 348, 1182
BstMWI GCNNNNNNNGC 6 cut(s) 136, 440, 677, 796, 1109, 1319
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 3 cut(s) 402, 481, 520
BstSFI CTRYAG 3 cut(s) 15, 507, 1233
BstV1I GCAGC 2 cut(s) 811, 1322
BstV2I GAAGAC 1 cut(s) 1002
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
Bsu15I ATCGAT 1 cut(s) 354
Bsu36I CCTNAGG 1 cut(s) 555
BsuI GTATCC 1 cut(s) 36
BsuRI GGCC 2 cut(s) 680, 1135
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 2 cut(s) 57, 1293
BtsCI GGATG 4 cut(s) 78, 105, 1011, 1183
CaiI CAGNNNCTG 1 cut(s) 1334
Cfr13I GGNCC 2 cut(s) 722, 916
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 2 cut(s) 223, 1141
CviAII CATG 4 cut(s) 58, 435, 1020, 1294
CviQI GTAC 2 cut(s) 223, 1141
DdeI CTNAG 5 cut(s) 49, 118, 555, 838, 1146
DpnI GATC 3 cut(s) 275, 350, 1184
DpnII GATC 3 cut(s) 273, 348, 1182
DraIII CACNNNGTG 1 cut(s) 52
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 1133
Ecl136II GAGCTC 2 cut(s) 694, 1230
Eco130I CCWWGG 2 cut(s) 57, 1293
Eco24I GRGCYC 4 cut(s) 545, 696, 1027, 1232
Eco47I GGWCC 2 cut(s) 722, 916
Eco53kI GAGCTC 2 cut(s) 694, 1230
Eco81I CCTNAGG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 929
EcoICRI GAGCTC 2 cut(s) 694, 1230
EcoRI GAATTC 1 cut(s) 1087
EcoT14I CCWWGG 2 cut(s) 57, 1293
EcoT38I GRGCYC 4 cut(s) 545, 696, 1027, 1232
ErhI CCWWGG 2 cut(s) 57, 1293
Esp3I CGTCTC 3 cut(s) 175, 567, 1208
FaeI CATG 4 cut(s) 61, 438, 1023, 1297
FatI CATG 4 cut(s) 57, 434, 1019, 1293
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 348
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 3 cut(s) 432, 800, 1311
FokI GGATG 4 cut(s) 65, 92, 1018, 1190
FriOI GRGCYC 4 cut(s) 545, 696, 1027, 1232
Fsp4HI GCNGC 3 cut(s) 432, 800, 1311
FspBI CTAG 1 cut(s) 269
GluI GCNGC 3 cut(s) 432, 800, 1311
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 680, 1135
HapII CCGG 7 cut(s) 140, 404, 483, 522, 803, 1037, 1277
Hin1II CATG 4 cut(s) 61, 438, 1023, 1297
HindIII AAGCTT 1 cut(s) 835
HpaII CCGG 7 cut(s) 140, 404, 483, 522, 803, 1037, 1277
HphI GGTGA 3 cut(s) 17, 376, 874
Hpy166II GTNNAC 5 cut(s) 301, 409, 586, 611, 736
Hpy188I TCNGA 7 cut(s) 327, 341, 534, 547, 1044, 1213, 1348
Hpy188III TCNNGA 7 cut(s) 426, 460, 619, 1012, 1097, 1186, 1225
Hpy8I GTNNAC 5 cut(s) 301, 409, 586, 611, 736
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 6 cut(s) 190, 195, 205, 460, 532, 968
HpyCH4III ACNGT 2 cut(s) 222, 511
HpyCH4IV ACGT 2 cut(s) 398, 647
HpyCH4V TGCA 3 cut(s) 32, 366, 1341
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 440, 677, 796, 1109, 1319
HpyF3I CTNAG 5 cut(s) 49, 118, 555, 838, 1146
HpySE526I ACGT 2 cut(s) 398, 647
Hsp92II CATG 4 cut(s) 61, 438, 1023, 1297
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 273, 348, 1182
LmnI GCTCC 5 cut(s) 428, 548, 691, 1030, 1285
Lsp1109I GCAGC 2 cut(s) 811, 1322
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 398, 647
MaeIII GTNAC 3 cut(s) 44, 214, 1069
MalI GATC 3 cut(s) 275, 350, 1184
MbiI CCGCTC 1 cut(s) 727
MboI GATC 3 cut(s) 273, 348, 1182
MboII GAAGA 8 cut(s) 20, 197, 352, 406, 753, 761, 1007, 1315
MfeI CAATTG 2 cut(s) 717, 784
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 5 cut(s) 545, 567, 696, 1027, 1232
MluCI AATT 8 cut(s) 328, 717, 784, 1087, 1092, 1263, 1316, 1342
MlyI GAGTC 1 cut(s) 1260
MmeI TCCRAC 1 cut(s) 1064
MseI TTAA 2 cut(s) 983, 1158
MslI CAYNNNNRTG 1 cut(s) 1298
MspA1I CMGCKG 1 cut(s) 389
MspCI CTTAAG 1 cut(s) 982
MspI CCGG 7 cut(s) 140, 404, 483, 522, 803, 1037, 1277
MspR9I CCNGG 3 cut(s) 404, 483, 522
MunI CAATTG 2 cut(s) 717, 784
MwoI GCNNNNNNNGC 6 cut(s) 136, 440, 677, 796, 1109, 1319
NciI CCSGG 3 cut(s) 404, 483, 522
NcoI CCATGG 2 cut(s) 57, 1293
NdeII GATC 3 cut(s) 273, 348, 1182
NlaIII CATG 4 cut(s) 61, 438, 1023, 1297
NlaIV GGNNCC 3 cut(s) 430, 544, 1026
NmuCI GTSAC 3 cut(s) 44, 214, 1069
NspI RCATGY 1 cut(s) 438
PcsI WCGNNNNNNNCGW 3 cut(s) 573, 744, 1065
PfeI GAWTC 9 cut(s) 143, 257, 744, 794, 903, 978, 1045, 1065, 1208
PkrI GCNGC 3 cut(s) 433, 801, 1312
PleI GAGTC 1 cut(s) 1259
PpsI GAGTC 1 cut(s) 1259
PsiI TTATAA 1 cut(s) 599
Psp124BI GAGCTC 2 cut(s) 696, 1232
PspN4I GGNNCC 3 cut(s) 430, 544, 1026
PspPI GGNCC 2 cut(s) 722, 916
PstNI CAGNNNCTG 1 cut(s) 1334
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 2 cut(s) 224, 1142
RsaNI GTAC 2 cut(s) 223, 1141
RseI CAYNNNNRTG 1 cut(s) 1298
SacI GAGCTC 2 cut(s) 696, 1232
SaqAI TTAA 2 cut(s) 983, 1158
SatI GCNGC 3 cut(s) 432, 800, 1311
Sau3AI GATC 3 cut(s) 273, 348, 1182
Sau96I GGNCC 2 cut(s) 722, 916
SchI GAGTC 1 cut(s) 1260
ScrFI CCNGG 3 cut(s) 404, 483, 522
SduI GDGCHC 5 cut(s) 545, 567, 696, 1027, 1232
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 3 cut(s) 15, 507, 1233
SinI GGWCC 2 cut(s) 722, 916
SmiMI CAYNNNNRTG 1 cut(s) 1298
SmlI CTYRAG 1 cut(s) 982
SmoI CTYRAG 1 cut(s) 982
Sse9I AATT 8 cut(s) 328, 717, 784, 1087, 1092, 1263, 1316, 1342
SspI AATATT 1 cut(s) 709
SspMI CTAG 1 cut(s) 269
SstI GAGCTC 2 cut(s) 696, 1232
StyD4I CCNGG 3 cut(s) 402, 481, 520
StyI CCWWGG 2 cut(s) 57, 1293
TaaI ACNGT 2 cut(s) 222, 511
TaiI ACGT 2 cut(s) 401, 650
TaqI TCGA 6 cut(s) 354, 468, 567, 620, 747, 1199
TasI AATT 8 cut(s) 328, 717, 784, 1087, 1092, 1263, 1316, 1342
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 9 cut(s) 143, 257, 744, 794, 903, 978, 1045, 1065, 1208
Tru1I TTAA 2 cut(s) 983, 1158
Tru9I TTAA 2 cut(s) 983, 1158
TseFI GTSAC 3 cut(s) 44, 214, 1069
TseI GCWGC 2 cut(s) 799, 1310
Tsp45I GTSAC 3 cut(s) 44, 214, 1069
TspDTI ATGAA 5 cut(s) 503, 551, 1217, 1221, 1316
TspGWI ACGGA 3 cut(s) 157, 753, 908
Vha464I CTTAAG 1 cut(s) 982
VpaK11BI GGWCC 2 cut(s) 722, 916
XapI RAATTY 2 cut(s) 328, 1087
XceI RCATGY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 1262
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.