Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000556.1

Orthogroup ID

OG0002368

Physical Location & Seq

Genomic Coordinates Reverse (-)

164535 .. 165242

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000556.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgccgcccatctactgcataggaccattaatcatttctcagagaggtggtggtagtgatgatgtgcccgagtgtttgacgtggctggattcacagccaagtggaagtgtggtcttcctttgttttggaagcttaggattgtttacaaaggagcagttggaggagatagctgtggggttagagaggagtggccaaaggttcttgtgggttgtccgtaatccaccttctcataatcaaagcgtggctattgcaggccaagtggatccggatttggattatttgcttccagatggttttttggatagaaccaagcatagggggcttgtggtgaagtcatgggcgccacaagtagaagttcttaatcatgattcagtaggtggatttgtgtgtcactgtgggtggaactcaattttggaggcggtatgtgctggggtgccaatgttggcttggccactctatgcagagcagagattaaatagagttgttttggttgaggaaataaagattgctctgccggtgaacgaatcaaaaagtgggtttgtgagtgcaaatgagctggagaatcgagttagagagttgatggactcggaggaaggagagtcagtcagaaagaagatcgaggctctgagaagtgaagcaaatgctgcaccgagtgaaggcgggacatctaaggtcgcattagctaaactggttgaatcatggaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

235

Amino Acids

25.69

Weight (kDa)

4.94

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16520 AT3G16520 AT3G16520
fragaria_vesca	FvH4_1g30110 FvH4_7g30500 FvH4_7g30540
malus_domestica	MD01G1210600.v1.1 MD01G1210700.v1.1 MD07G1280800.v1.1 MD07G1281000.v1.1
prunus_persica	Prupe.2G303000_v2.0.a1
pyrus_communis	pycom01g22110 pycom07g25550
rosa_chinensis	RchiOBHm_Chr1g0378901 RchiOBHm_Chr1g0378931 RchiOBHm_Chr1g0378941
rosa_laevigata	RLG00000026407 RLG00000026408 RLG00000026410
rosa_multiflora	Rmu_sc0000556.1_g000032 Rmu_sc0000556.1_g000035 Rmu_sc0006761.1_g000001 Rmu_sc0006761.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280260 Rroxscaffold_4G00280270 Rroxscaffold_4G00280280
rosa_rugosa	Rorug01G0411000 Rorug01G0411500 Rorug07G0124400
rosa_samantha	Rh1AG433800 Rh1BG391400 Rh1BG391600 Rh1CG404200 Rh1CG404400 Rh1DG422600 Rh1DG422800 Rh7BG250700
rosa_wichuraiana	Rw0G000080 Rw0G000090 Rw1G037860 Rw1G037880 Rw1G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	340, 433
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	3 cut(s)	5, 419, 660
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	2 cut(s)	190, 449
AcyI	GRCGYC	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	653
AfiI	CCNNNNNNNGG	2 cut(s)	315, 656
AgsI	TTSAA	1 cut(s)	695
AjiI	CACGTC	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	4 cut(s)	132, 170, 556, 683
AluI	AGCT	4 cut(s)	132, 170, 556, 683
AlwI	GGATC	2 cut(s)	257, 270
Ama87I	CYCGRG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	3 cut(s)	190, 253, 449
ApeKI	GCWGC	1 cut(s)	644
AseI	ATTAAT	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	340, 529
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	69
BalI	TGGCCA	2 cut(s)	192, 451
BamHI	GGATCC	1 cut(s)	262
BanI	GGYRCC	2 cut(s)	340, 433
BarI	GAAGNNNNNNTAC	2 cut(s)	208, 240
BbsI	GAAGAC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	3 cut(s)	17, 284, 574
BfoI	RGCGCY	1 cut(s)	344
BisI	GCNGC	2 cut(s)	5, 645
BlsI	GCNGC	2 cut(s)	6, 646
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	68
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	3 cut(s)	264, 342, 435
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 656
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	315, 656
BseMII	CTCAG	2 cut(s)	53, 617
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	2 cut(s)	176, 199
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	631
BseYI	CCCAGC	1 cut(s)	428
BsgI	GTGCAG	1 cut(s)	630
BshFI	GGCC	3 cut(s)	192, 255, 451
BshNI	GGYRCC	2 cut(s)	340, 433
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	266, 515
BslFI	GGGAC	1 cut(s)	676
BslI	CCNNNNNNNGG	2 cut(s)	315, 656
BsmFI	GGGAC	1 cut(s)	676
BsnI	GGCC	3 cut(s)	192, 255, 451
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	262, 615
BspACI	CCGC	3 cut(s)	5, 419, 660
BspANI	GGCC	3 cut(s)	192, 255, 451
BspCNI	CTCAG	2 cut(s)	52, 618
BspEI	TCCGGA	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	264, 342, 435
BspPI	GGATC	2 cut(s)	257, 270
BspT107I	GGYRCC	2 cut(s)	340, 433
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	693
BssAI	RCCGGY	1 cut(s)	514
BssMI	GATC	2 cut(s)	262, 615
BssNI	GRCGYC	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	4 cut(s)	39, 133, 626, 669
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	265, 618
BstMBI	GATC	2 cut(s)	262, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 425, 644
BstSLI	GKGCMC	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	192, 255, 451
BtrI	CACGTC	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	23
CviAII	CATG	3 cut(s)	336, 365, 699
DdeI	CTNAG	4 cut(s)	39, 133, 626, 669
DinI	GGCGCC	1 cut(s)	342
DpnI	GATC	2 cut(s)	264, 617
DpnII	GATC	2 cut(s)	262, 615
DraIII	CACNNNGTG	1 cut(s)	653
EaeI	YGGCCR	2 cut(s)	190, 449
Eco47I	GGWCC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	68
EgeI	GGCGCC	1 cut(s)	342
EheI	GGCGCC	1 cut(s)	342
FaeI	CATG	3 cut(s)	339, 368, 702
FaiI	YATR	8 cut(s)	20, 231, 315, 337, 366, 424, 459, 700
FaqI	GGGAC	1 cut(s)	676
FatI	CATG	3 cut(s)	335, 364, 698
FauI	CCCGC	1 cut(s)	653
Fnu4HI	GCNGC	2 cut(s)	5, 645
Fsp4HI	GCNGC	2 cut(s)	5, 645
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	5, 645
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	3 cut(s)	192, 255, 451
HapII	CCGG	2 cut(s)	266, 515
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	339, 368, 702
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	7 cut(s)	89, 368, 524, 562, 584, 599, 695
HpaII	CCGG	2 cut(s)	266, 515
HphI	GGTGA	2 cut(s)	340, 529
Hpy166II	GTNNAC	2 cut(s)	144, 520
Hpy188I	TCNGA	4 cut(s)	42, 589, 608, 627
Hpy188III	TCNNGA	3 cut(s)	266, 287, 365
Hpy8I	GTNNAC	2 cut(s)	144, 520
HpyAV	CCTTC	3 cut(s)	234, 587, 650
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	5 cut(s)	18, 251, 461, 548, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 425, 644
HpyF3I	CTNAG	4 cut(s)	39, 133, 626, 669
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	339, 368, 702
HspAI	GCGC	1 cut(s)	341
KasI	GGCGCC	1 cut(s)	340
Kpn2I	TCCGGA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	262, 615
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	71, 237, 279, 300, 414, 528, 542, 674
Lsp1109I	GCAGC	1 cut(s)	631
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	2 cut(s)	264, 617
MboI	GATC	2 cut(s)	262, 615
MboII	GAAGA	2 cut(s)	106, 625
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	2 cut(s)	192, 451
MluCI	AATT	1 cut(s)	408
MluNI	TGGCCA	2 cut(s)	192, 451
Mly113I	GGCGCC	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	578, 608
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	7 cut(s)	38, 154, 177, 409, 487, 583, 613
Mox20I	TGGCCA	2 cut(s)	192, 451
MroI	TCCGGA	1 cut(s)	265
MscI	TGGCCA	2 cut(s)	192, 451
MseI	TTAA	3 cut(s)	29, 360, 473
Msp20I	TGGCCA	2 cut(s)	192, 451
MspI	CCGG	2 cut(s)	266, 515
MwoI	GCNNNNNNNGC	3 cut(s)	319, 425, 644
NarI	GGCGCC	1 cut(s)	341
NdeII	GATC	2 cut(s)	262, 615
NlaIII	CATG	3 cut(s)	339, 368, 702
NlaIV	GGNNCC	3 cut(s)	264, 342, 435
NmuCI	GTSAC	1 cut(s)	389
PagI	TCATGA	1 cut(s)	364
PfeI	GAWTC	5 cut(s)	89, 368, 524, 562, 695
PkrI	GCNGC	2 cut(s)	6, 646
PleI	GAGTC	2 cut(s)	578, 607
PluTI	GGCGCC	1 cut(s)	344
PpsI	GAGTC	2 cut(s)	578, 607
PshBI	ATTAAT	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	428
PspN4I	GGNNCC	3 cut(s)	264, 342, 435
PspPI	GGNCC	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	29, 360, 473
SatI	GCNGC	2 cut(s)	5, 645
Sau3AI	GATC	2 cut(s)	262, 615
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	2 cut(s)	578, 608
SduI	GDGCHC	1 cut(s)	69
SfoI	GGCGCC	1 cut(s)	342
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	5, 419, 660
SspDI	GGCGCC	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	565, 618
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	5 cut(s)	89, 368, 524, 562, 695
Tru1I	TTAA	3 cut(s)	29, 360, 473
Tru9I	TTAA	3 cut(s)	29, 360, 473
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.