Rw0G000090

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00003
OG0002368
Physical Location & Seq
Reverse (-)
9343 .. 11726
2384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000090.1

Sequence Viewer

Length: 1428 bp
ATGGAGGCGATTGTTTTATACCCATCACCACCTATTGGCCACTTGGTTTCCATGGTAGAGTTGGGCAAATTCATACTTACTTGCCATCCTTCGTGTAGTATCCACGTACTTATCACCACCCCACCTTACAGAGCCGATGACACCGCTCCATATATTGCCTCTGTCTCTGCCACTACTCCCTCCATCATCTTCCGCCATCTCCCAACTATCTCTCTCCCTCCCTCCTCCACTTCCTCTCCCAACCATGAAACCCTAACCTTTGAGGTCGTTCGGCTCAACAACCCCAACGTCCACAAAGCCCTCCTTTCCATCTCCAACAACTTTAATGTTCAAGCTTTTATCATGGACTTCTTCTGTGGTCTTGGGCTTTCTGTCGCTATTGATCTGAATATCCCAGGATATTTTTTCTTCACATCTGGTGCAGGATGCCTAGCTTCCTTTCTTACACTCCCTGCTATTCACAAAAACACTGACAAGAGCCTCAAAGACCTTAACACCCTTCTCTCTATTCCAGGAGTACCACCAATACCTTCCTCTGATATGCCAAAACCAGTTTTGGTACGTAATGACAAGGCCTATGAGTGCTTCCTAGAAAACTCAACACAATTTCTCAAATCAGCTGGGATTATCGTGAACACGTTTGAATCACTCGAATCTAGGGCCATCAGAGCAATATCAGATGGACTATGCTTGCCTGAAGATGTTCCCACACCACCCATCTTTTGCATAGGTCCGTTAATCTTTGCTCACAATCAAAGAGGTGGTGGTAATGATGATGTGTCTGAGTGTTTGACATGGCTGGACTCACAGCCAAGTGGCAGTGTAGTCTTCCTCTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGGGGAAATAGCTGCGGGGTTAGAGAGGAGTGACCAAAGGTTCTTGTGGGTTGTCCGTAATCCACCTTCTCATAATCAAAGCGTTGCTATTGCAGGTCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGGTTTTTTGGATAGAACTAAGGATAGGGGTCTTATAGTGAAGTCATGGGCGCCACAAGTGGCAGTGCTGAATCATGATTCTCTAGGTGGGTTTGTGAGTCACTGTGGGTGGAACTCGGTGTTGGAGGCAGTGTGTGCTGGGGTGCCAATTGTGTCTTGGCCACTCTATGCTGAGCAGAGATTTAATAGGGTTATTTTGGTGGAGGAAATAAAGATTGCTTTACCAATGAACGAGTCACTAGACGGTTTTGTAAATGCAACAGAGGTGGAGAAGCGAGTTAGAGAGTTGATGGACTCGGAGAAAGGAGAGTCAATCAGGAAGAGGACCAAGGCCTTGAAGAGTGAAGCAAATGCTGCTCTGAGTGAAGCCGGGACATCTTGGATTGCATTAACTAAACTGGTCGAATCGTGGAATCAAGGCTGA

Protein Analysis

475

Amino Acids

51.77

Weight (kDa)

5.34

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 265 - 399 6.2e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 956
AccB1I GGYRCC 2 cut(s) 1054, 1147
AccB7I CCANNNNNTGG 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 146
AccIII TCCGGA 1 cut(s) 979
AciI CCGC 3 cut(s) 144, 193, 887
AclWI GGATC 2 cut(s) 971, 984
AcoI YGGCCR 2 cut(s) 37, 1163
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 1055
AfaI GTAC 3 cut(s) 108, 519, 561
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 3 cut(s) 332, 644, 1342
AjnI CCWGG 2 cut(s) 394, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AluBI AGCT 5 cut(s) 335, 434, 620, 846, 884
AluI AGCT 5 cut(s) 335, 434, 620, 846, 884
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 971, 984
Aor13HI TCCGGA 1 cut(s) 979
AoxI GGCC 5 cut(s) 37, 573, 660, 1163, 1335
ApeKI GCWGC 2 cut(s) 884, 1358
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 1 cut(s) 1057
AspS9I GGNCC 3 cut(s) 660, 731, 1329
AsuC2I CCSGG 1 cut(s) 1375
AsuHPI GGTGA 2 cut(s) 18, 106
AvaII GGWCC 2 cut(s) 731, 1329
BalI TGGCCA 2 cut(s) 39, 1165
BamHI GGATCC 1 cut(s) 976
BanI GGYRCC 2 cut(s) 1054, 1147
BarI GAAGNNNNNNTAC 2 cut(s) 922, 954
BbsI GAAGAC 1 cut(s) 820
BbvI GCAGC 2 cut(s) 871, 1345
BciT130I CCWGG 2 cut(s) 396, 513
BciVI GTATCC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 1375
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 5 cut(s) 431, 590, 657, 1088, 1244
BfoI RGCGCY 1 cut(s) 1058
BfuAI ACCTGC 1 cut(s) 956
BfuI GTATCC 1 cut(s) 110
BisI GCNGC 2 cut(s) 885, 1359
BlpI GCTNAGC 1 cut(s) 1176
BlsI GCNGC 2 cut(s) 886, 1360
Bme1390I CCNGG 3 cut(s) 396, 513, 1375
Bme18I GGWCC 2 cut(s) 731, 1329
BmgT120I GGNCC 3 cut(s) 660, 731, 1329
BmiI GGNNCC 3 cut(s) 978, 1056, 1149
BmrFI CCNGG 3 cut(s) 396, 513, 1375
BmsI GCATC 1 cut(s) 416
BpiI GAAGAC 1 cut(s) 820
Bpu10I CCTNAGC 1 cut(s) 847
Bpu1102I GCTNAGC 1 cut(s) 1176
BpuMI CCSGG 1 cut(s) 1375
BsaAI YACGTR 2 cut(s) 106, 563
BsaHI GRCGYC 1 cut(s) 1055
BsaJI CCNNGG 3 cut(s) 51, 394, 1332
BsaWI WCCGGW 1 cut(s) 979
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 1121, 1151
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 551, 1407
BseAI TCCGGA 1 cut(s) 979
BseBI CCWGG 2 cut(s) 396, 513
BseDI CCNNGG 3 cut(s) 51, 394, 1332
BseGI GGATG 2 cut(s) 85, 431
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 3 cut(s) 774, 1167, 1355
BseNI ACTGG 2 cut(s) 551, 1407
BseRI GAGGAG 2 cut(s) 214, 913
BseXI GCAGC 2 cut(s) 871, 1345
BseYI CCCAGC 2 cut(s) 620, 1142
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 5 cut(s) 39, 575, 662, 1165, 1337
BshNI GGYRCC 2 cut(s) 1054, 1147
BsiSI CCGG 2 cut(s) 980, 1374
BslFI GGGAC 1 cut(s) 1390
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 1390
BsnI GGCC 5 cut(s) 39, 575, 662, 1165, 1337
Bsp13I TCCGGA 1 cut(s) 979
Bsp143I GATC 2 cut(s) 382, 976
Bsp1720I GCTNAGC 1 cut(s) 1176
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 3 cut(s) 144, 193, 887
BspANI GGCC 5 cut(s) 39, 575, 662, 1165, 1337
BspCNI CTCAG 3 cut(s) 775, 1168, 1356
BspEI TCCGGA 1 cut(s) 979
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 3 cut(s) 978, 1056, 1149
BspMI ACCTGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 971, 984
BspT107I GGYRCC 2 cut(s) 1054, 1147
BsrBI CCGCTC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 551, 1407
BssECI CCNNGG 3 cut(s) 51, 394, 1332
BssMI GATC 2 cut(s) 382, 976
BssNI GRCGYC 1 cut(s) 1055
BssT1I CCWWGG 2 cut(s) 51, 1332
Bst2UI CCWGG 2 cut(s) 396, 513
Bst4CI ACNGT 2 cut(s) 1109, 1250
Bst6I CTCTTC 2 cut(s) 1319, 1337
BstACI GRCGYC 1 cut(s) 1055
BstAPI GCANNNNNTGC 2 cut(s) 1139, 1358
BstBAI YACGTR 2 cut(s) 106, 563
BstC8I GCNNGC 1 cut(s) 692
BstDEI CTNAG 5 cut(s) 783, 847, 1023, 1176, 1364
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 85, 431
BstH2I RGCGCY 1 cut(s) 1058
BstHHI GCGC 1 cut(s) 1057
BstKTI GATC 2 cut(s) 385, 979
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 2 cut(s) 382, 976
BstMWI GCNNNNNNNGC 3 cut(s) 668, 1139, 1358
BstNI CCWGG 2 cut(s) 396, 513
BstSCI CCNGG 3 cut(s) 394, 511, 1373
BstSNI TACGTA 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 871, 1345
BstV2I GAAGAC 1 cut(s) 820
BstX2I RGATCY 1 cut(s) 976
BstYI RGATCY 1 cut(s) 976
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 5 cut(s) 39, 575, 662, 1165, 1337
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 85, 431
BtsI GCAGTG 3 cut(s) 826, 1074, 1140
BtsIMutI CAGTG 5 cut(s) 468, 826, 1074, 1105, 1140
BveI ACCTGC 1 cut(s) 956
Cac8I GCNNGC 1 cut(s) 692
CciI TCATGA 1 cut(s) 1078
CfoI GCGC 1 cut(s) 1057
Cfr13I GGNCC 3 cut(s) 660, 731, 1329
Csp6I GTAC 3 cut(s) 107, 518, 560
CspCI CAANNNNNGTGG 2 cut(s) 1251, 1286
CviAII CATG 6 cut(s) 52, 245, 343, 795, 1050, 1079
CviQI GTAC 3 cut(s) 107, 518, 560
DdeI CTNAG 5 cut(s) 783, 847, 1023, 1176, 1364
DinI GGCGCC 1 cut(s) 1056
DpnI GATC 2 cut(s) 384, 978
DpnII GATC 2 cut(s) 382, 976
EaeI YGGCCR 2 cut(s) 37, 1163
Eam1104I CTCTTC 2 cut(s) 1319, 1337
EarI CTCTTC 2 cut(s) 1319, 1337
EciI GGCGGA 1 cut(s) 182
Eco105I TACGTA 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 51, 1332
Eco147I AGGCCT 2 cut(s) 575, 1337
Eco47I GGWCC 2 cut(s) 731, 1329
Eco57I CTGAAG 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 394, 511
EcoT14I CCWWGG 2 cut(s) 51, 1332
EgeI GGCGCC 1 cut(s) 1056
EheI GGCGCC 1 cut(s) 1056
ErhI CCWWGG 2 cut(s) 51, 1332
FaeI CATG 6 cut(s) 55, 248, 346, 798, 1053, 1082
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 1 cut(s) 1390
FatI CATG 6 cut(s) 51, 244, 342, 794, 1049, 1078
FauI CCCGC 1 cut(s) 880
Fnu4HI GCNGC 2 cut(s) 885, 1359
FokI GGATG 2 cut(s) 72, 438
Fsp4HI GCNGC 2 cut(s) 885, 1359
FspBI CTAG 5 cut(s) 431, 590, 657, 1088, 1244
GlaI GCGC 1 cut(s) 1056
GluI GCNGC 2 cut(s) 885, 1359
GsaI CCCAGC 2 cut(s) 624, 1146
HaeII RGCGCY 1 cut(s) 1058
HaeIII GGCC 5 cut(s) 39, 575, 662, 1165, 1337
HapII CCGG 2 cut(s) 980, 1374
HhaI GCGC 1 cut(s) 1057
Hin1I GRCGYC 1 cut(s) 1055
Hin1II CATG 6 cut(s) 55, 248, 346, 798, 1053, 1082
Hin6I GCGC 1 cut(s) 1055
HinP1I GCGC 1 cut(s) 1055
HindIII AAGCTT 2 cut(s) 333, 844
HpaII CCGG 2 cut(s) 980, 1374
HphI GGTGA 2 cut(s) 18, 106
Hpy166II GTNNAC 3 cut(s) 292, 634, 858
Hpy188I TCNGA 7 cut(s) 387, 538, 668, 679, 784, 1303, 1365
Hpy188III TCNNGA 5 cut(s) 631, 980, 1001, 1079, 1321
Hpy8I GTNNAC 3 cut(s) 292, 634, 858
HpyAV CCTTC 4 cut(s) 99, 509, 540, 948
HpyCH4III ACNGT 2 cut(s) 1109, 1250
HpyCH4IV ACGT 4 cut(s) 105, 288, 562, 638
HpyCH4V TGCA 5 cut(s) 422, 726, 965, 1262, 1391
HpyF10VI GCNNNNNNNGC 3 cut(s) 668, 1139, 1358
HpyF3I CTNAG 5 cut(s) 783, 847, 1023, 1176, 1364
HpySE526I ACGT 4 cut(s) 105, 288, 562, 638
Hsp92I GRCGYC 1 cut(s) 1055
Hsp92II CATG 6 cut(s) 55, 248, 346, 798, 1053, 1082
HspAI GCGC 1 cut(s) 1055
KasI GGCGCC 1 cut(s) 1054
Kpn2I TCCGGA 1 cut(s) 979
Kzo9I GATC 2 cut(s) 382, 976
LmnI GCTCC 2 cut(s) 151, 865
Lsp1109I GCAGC 2 cut(s) 871, 1345
LweI GCATC 1 cut(s) 416
MaeI CTAG 5 cut(s) 431, 590, 657, 1088, 1244
MaeII ACGT 4 cut(s) 105, 288, 562, 638
MaeIII GTNAC 3 cut(s) 902, 1103, 1239
MalI GATC 2 cut(s) 384, 978
MbiI CCGCTC 1 cut(s) 146
MboI GATC 2 cut(s) 382, 976
MboII GAAGA 7 cut(s) 181, 343, 400, 710, 820, 1336, 1354
MfeI CAATTG 1 cut(s) 1152
MflI RGATCY 1 cut(s) 976
MlsI TGGCCA 2 cut(s) 39, 1165
MluCI AATT 3 cut(s) 68, 605, 1152
MluNI TGGCCA 2 cut(s) 39, 1165
Mly113I GGCGCC 1 cut(s) 1055
MlyI GAGTC 5 cut(s) 797, 1111, 1247, 1292, 1322
MmeI TCCRAC 2 cut(s) 339, 1107
Mox20I TGGCCA 2 cut(s) 39, 1165
MroI TCCGGA 1 cut(s) 979
MroXI GAANNNNTTC 1 cut(s) 702
MscI TGGCCA 2 cut(s) 39, 1165
MseI TTAA 5 cut(s) 324, 492, 737, 1188, 1394
Msp20I TGGCCA 2 cut(s) 39, 1165
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 980, 1374
MspR9I CCNGG 3 cut(s) 396, 513, 1375
MunI CAATTG 1 cut(s) 1152
MvaI CCWGG 2 cut(s) 396, 513
MwoI GCNNNNNNNGC 3 cut(s) 668, 1139, 1358
NarI GGCGCC 1 cut(s) 1055
NciI CCSGG 1 cut(s) 1375
NcoI CCATGG 1 cut(s) 51
NdeII GATC 2 cut(s) 382, 976
NlaIII CATG 6 cut(s) 55, 248, 346, 798, 1053, 1082
NlaIV GGNNCC 3 cut(s) 978, 1056, 1149
NmuCI GTSAC 3 cut(s) 902, 1103, 1239
PagI TCATGA 1 cut(s) 1078
PceI AGGCCT 2 cut(s) 575, 1337
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 6 cut(s) 644, 653, 1075, 1082, 1409, 1417
PflMI CCANNNNNTGG 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 2 cut(s) 886, 1360
PleI GAGTC 5 cut(s) 797, 1110, 1246, 1292, 1321
PluTI GGCGCC 1 cut(s) 1058
PpsI GAGTC 5 cut(s) 797, 1110, 1246, 1292, 1321
Ppu21I YACGTR 2 cut(s) 106, 563
Psp6I CCWGG 2 cut(s) 394, 511
PspFI CCCAGC 2 cut(s) 620, 1142
PspGI CCWGG 2 cut(s) 394, 511
PspN4I GGNNCC 3 cut(s) 978, 1056, 1149
PspPI GGNCC 3 cut(s) 660, 731, 1329
PsuI RGATCY 1 cut(s) 976
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 3 cut(s) 108, 519, 561
RsaNI GTAC 3 cut(s) 107, 518, 560
SaqAI TTAA 5 cut(s) 324, 492, 737, 1188, 1394
SatI GCNGC 2 cut(s) 885, 1359
Sau3AI GATC 2 cut(s) 382, 976
Sau96I GGNCC 3 cut(s) 660, 731, 1329
SchI GAGTC 5 cut(s) 797, 1111, 1247, 1292, 1322
ScrFI CCNGG 3 cut(s) 396, 513, 1375
SfaNI GCATC 1 cut(s) 416
SfoI GGCGCC 1 cut(s) 1056
SinI GGWCC 2 cut(s) 731, 1329
SnaBI TACGTA 1 cut(s) 563
Sse9I AATT 3 cut(s) 68, 605, 1152
SseBI AGGCCT 2 cut(s) 575, 1337
SsiI CCGC 3 cut(s) 144, 193, 887
SspDI GGCGCC 1 cut(s) 1054
SspMI CTAG 5 cut(s) 431, 590, 657, 1088, 1244
StuI AGGCCT 2 cut(s) 575, 1337
StyD4I CCNGG 3 cut(s) 394, 511, 1373
StyI CCWWGG 2 cut(s) 51, 1332
TaaI ACNGT 2 cut(s) 1109, 1250
TaiI ACGT 4 cut(s) 108, 291, 565, 641
TaqI TCGA 2 cut(s) 651, 1407
TasI AATT 3 cut(s) 68, 605, 1152
TfiI GAWTC 6 cut(s) 644, 653, 1075, 1082, 1409, 1417
Tru1I TTAA 5 cut(s) 324, 492, 737, 1188, 1394
Tru9I TTAA 5 cut(s) 324, 492, 737, 1188, 1394
TscAI CASTG 5 cut(s) 475, 826, 1074, 1112, 1140
TseFI GTSAC 3 cut(s) 902, 1103, 1239
TseI GCWGC 2 cut(s) 884, 1358
Tsp45I GTSAC 3 cut(s) 902, 1103, 1239
TspDTI ATGAA 3 cut(s) 61, 261, 1247
TspGWI ACGGA 2 cut(s) 723, 917
TspRI CASTG 5 cut(s) 475, 826, 1074, 1112, 1140
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 731, 1329
XapI RAATTY 1 cut(s) 68
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 1158
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 5 cut(s) 431, 590, 657, 1088, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.