Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002368

Physical Location & Seq

Genomic Coordinates Forward (+)

22711866 .. 22722242

Gene Structure 10377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG250700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTTGCGATGCATTGTTCGACGTCGCGAAAGACCTCAACATCCCTACATTCTACTTCTACACCTCCGCAGGAAGGAGTCTTGCTGTCTTACTCAACATCCCCACCTTCCATCGCACAACCAACAATCTGTCTGATTTTGGCGATGTCCTGATTTCCATTTTGGGCATGCCGCCGATTCCTGTTTTGGCAATGCCCAAGCTGTTGTTTGACCGCTCTACTAATTTCTACAAGAGCTTCCTGTCGACTTCAACTTACATGGCAAAGTCAAATGGAATCATTCTCAACACGTTTGATCTGCTGGAAAAGAGGGCCCTCAAAGCGTTGAGGGCTGGACTGTGCTTGCCTAACCAACCCACACCTCCGATCTTCACTGTCGGACCGTTGATCTCAGGGAAGAGTGGAGATAATGATGAGCATGAGAGCTTGAAGTGGCTAAACAACCAGCCCAAAGACAGCGTTGTGTTTCTATGTTTCGGAAGCATGAGAGTGTTTTCTATCAAACAGTTGGAGGCCATGGCTTTAGGTTTAGAGAAAAGTGGCCAGAGGTTTTTGTGGGTGTCGTATCCCGTGATGACCAACTACCTCAAGATGGGCTACAAGTGCCAAAAACTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

206

Amino Acids

23.13

Weight (kDa)

9.16

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16520 AT3G16520 AT3G16520
fragaria_vesca	FvH4_1g30110 FvH4_7g30500 FvH4_7g30540
malus_domestica	MD01G1210600.v1.1 MD01G1210700.v1.1 MD07G1280800.v1.1 MD07G1281000.v1.1
prunus_persica	Prupe.2G303000_v2.0.a1
pyrus_communis	pycom01g22110 pycom07g25550
rosa_chinensis	RchiOBHm_Chr1g0378901 RchiOBHm_Chr1g0378931 RchiOBHm_Chr1g0378941
rosa_laevigata	RLG00000026407 RLG00000026408 RLG00000026410
rosa_multiflora	Rmu_sc0000556.1_g000032 Rmu_sc0000556.1_g000035 Rmu_sc0006761.1_g000001 Rmu_sc0006761.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280260 Rroxscaffold_4G00280270 Rroxscaffold_4G00280280
rosa_rugosa	Rorug01G0411000 Rorug01G0411500 Rorug07G0124400
rosa_samantha	Rh1AG433800 Rh1BG391400 Rh1BG391600 Rh1CG404200 Rh1CG404400 Rh1DG422600 Rh1DG422800 Rh7BG250700
rosa_wichuraiana	Rw0G000080 Rw0G000090 Rw1G037860 Rw1G037880 Rw1G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	245
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	69, 173, 214
AcoI	YGGCCR	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	75, 592
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	252, 430
AluBI	AGCT	3 cut(s)	202, 237, 426
AluI	AGCT	3 cut(s)	202, 237, 426
AoxI	GGCC	3 cut(s)	312, 513, 541
ApaI	GGGCCC	1 cut(s)	316
AspS9I	GGNCC	3 cut(s)	312, 313, 380
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	316
BalI	TGGCCA	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	316
BccI	CCATC	2 cut(s)	120, 586
BciVI	GTATCC	1 cut(s)	576
BfuI	GTATCC	1 cut(s)	576
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	3 cut(s)	312, 313, 380
BmiI	GGNNCC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	572
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 592
Bse3DI	GCAATG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	2 cut(s)	42, 99
BseLI	CCNNNNNNNGG	2 cut(s)	75, 592
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	3 cut(s)	314, 515, 543
BslI	CCNNNNNNNGG	2 cut(s)	75, 592
BsnI	GGCC	3 cut(s)	314, 515, 543
Bsp120I	GGGCCC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	295, 366, 387
Bsp19I	CCATGG	1 cut(s)	516
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	3 cut(s)	69, 173, 214
BspANI	GGCC	3 cut(s)	314, 515, 543
BspCNI	CTCAG	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	295, 366, 387
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	516
Bst4CI	ACNGT	4 cut(s)	339, 376, 384, 507
Bst6I	CTCTTC	1 cut(s)	392
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	170, 344
BstDEI	CTNAG	1 cut(s)	391
BstDSI	CCRYGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	42, 99
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	3 cut(s)	298, 369, 390
BstMBI	GATC	3 cut(s)	295, 366, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 329, 603
BstNSI	RCATGY	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	3 cut(s)	314, 515, 543
BtgI	CCRYGG	1 cut(s)	516
BtgZI	GCGATG	3 cut(s)	24, 98, 159
BtsCI	GGATG	2 cut(s)	42, 99
BtsIMutI	CAGTG	2 cut(s)	372, 616
BtuMI	TCGCGA	1 cut(s)	29
Cac8I	GCNNGC	2 cut(s)	170, 344
Cfr13I	GGNCC	3 cut(s)	312, 313, 380
CpoI	CGGWCCG	1 cut(s)	380
CspI	CGGWCCG	1 cut(s)	380
CviAII	CATG	5 cut(s)	169, 259, 419, 484, 517
DdeI	CTNAG	1 cut(s)	391
DpnI	GATC	3 cut(s)	297, 368, 389
DpnII	GATC	3 cut(s)	295, 366, 387
EaeI	YGGCCR	1 cut(s)	541
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	380
EcoO109I	RGGNCCY	2 cut(s)	312, 313
EcoT14I	CCWWGG	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	5 cut(s)	172, 262, 422, 487, 520
FaiI	YATR	6 cut(s)	170, 260, 420, 472, 485, 518
FatI	CATG	5 cut(s)	168, 258, 418, 483, 516
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	2 cut(s)	29, 86
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	314, 515, 543
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	5 cut(s)	172, 262, 422, 487, 520
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	79, 178, 276
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	4 cut(s)	136, 366, 380, 479
Hpy188III	TCNNGA	3 cut(s)	28, 151, 589
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	2 cut(s)	26, 29
HpyAV	CCTTC	2 cut(s)	69, 118
HpyCH4III	ACNGT	4 cut(s)	339, 376, 384, 507
HpyCH4IV	ACGT	2 cut(s)	24, 290
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 329, 603
HpyF3I	CTNAG	1 cut(s)	391
HpySE526I	ACGT	2 cut(s)	24, 290
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	172, 262, 422, 487, 520
Kzo9I	GATC	3 cut(s)	295, 366, 387
LpnPI	CCDG	9 cut(s)	57, 164, 195, 254, 287, 318, 378, 458, 557
MaeII	ACGT	2 cut(s)	24, 290
MalI	GATC	3 cut(s)	297, 368, 389
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	3 cut(s)	295, 366, 387
MboII	GAAGA	2 cut(s)	361, 409
MhlI	GDGCHC	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	358, 489
MnlI	CCTC	9 cut(s)	47, 76, 303, 321, 326, 372, 505, 540, 596
Mox20I	TGGCCA	1 cut(s)	543
Mph1103I	ATGCAT	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	543
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	320, 329, 603
NcoI	CCATGG	1 cut(s)	516
NdeII	GATC	3 cut(s)	295, 366, 387
NlaIII	CATG	5 cut(s)	172, 262, 422, 487, 520
NlaIV	GGNNCC	1 cut(s)	314
NruI	TCGCGA	1 cut(s)	29
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	178, 276
PkrI	GCNGC	1 cut(s)	174
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	314
PspOMI	GGGCCC	1 cut(s)	312
PspPI	GGNCC	3 cut(s)	312, 313, 380
RruI	TCGCGA	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	488
Rsr2I	CGGWCCG	1 cut(s)	380
RsrII	CGGWCCG	1 cut(s)	380
SalI	GTCGAC	1 cut(s)	244
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	3 cut(s)	295, 366, 387
Sau96I	GGNCC	3 cut(s)	312, 313, 380
SchI	GAGTC	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	3 cut(s)	69, 173, 214
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	4 cut(s)	339, 376, 384, 507
TaiI	ACGT	2 cut(s)	27, 293
TaqI	TCGA	2 cut(s)	21, 245
TasI	AATT	1 cut(s)	223
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	2 cut(s)	178, 276
TscAI	CASTG	1 cut(s)	379
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	380
XceI	RCATGY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	245
ZraI	GACGTC	1 cut(s)	25
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.