Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002368

Physical Location & Seq

Genomic Coordinates Forward (+)

65958507 .. 65959934

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG433800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGATGCTATTCAGGCTATAGTTTTATACCCATCACCACCCATAGGCCACTTGGTTTCTATGGTAGAGTTAGGCAAACTCATACTTACTCACCATCCTTCACTAAGCATCCACATAATCCTTGCCACCCCACCTTACAGAGCCGATGATACCGCCCCATACATTGCCTCTGTGTCTGCCACTACATCCTCCATCATCTTCCACCGCCTCCCCACTGTCTCTCTCCCTCCCTCTATCACTTCCGGCACACGCAACCATGAAACTCTAACCTTTGAAGTTCTCCGCCTCAACAACCCTCACGTCCACCAAGCCCTCCTTTCCATCTCCAACAGCTTCACTGTCCAAGCTTTTATCATGGACTTCTTCTGTGGTCTCGGACTTTCTGTTGCTACTGATCTGAACATCCCTGGTTACTTTTACATAACATCTGGTGCAGGGTTCCTAGCTTCCTTCCTTTACCTTCCTACTATTCACAAAAACACTGACAAGAGCCTTAAAGACCTTGACACCCTCATCTTTATGCCAGGAGTACCACCAGTACATTCCTTAGATATGCCGAAACCATTTCTTGAAAGCAATGACAAGGCTTATGAATGCTTCCTAGAGAACTCAACCCACTCGAGCAAATCAGCTGGGATTATCGTAAACACTTTTGAATCACTTGAACCTAGAACTATCAGAGCACTATCAGATGGACTATGCTTGCCTGATGATATTACCATGCCTCCCATCTACTGCATAGGACCATTAATCATTTCTCAGAGAGGTGGTGGTAGTGATGATGTGCCCGAGTGTTTGACGTGGCTGGATTCACAGCCAAGTGGAAGTGTGGTCTTCCTTTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGAGGAGATAGCTGTGGGGTTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTTGTCCGTAATCCACCTTCTCATAATCAAAGCGTGGCTATTGCAGGCCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGAGCAGAGATTAAATAGGGTTGTTTTGGTTGAGGAAATAAAGATTGCTCTGCCGGTGAACGAATCAAAAAGCGGGTTTGTGAGTGCAAATGAGCTGGAGAATCGAGTTAGAGAGTTGATGGACTCGGAGGAAGGAGAGTCAGTCAGAAAGAAGATCGAGGCTCTGAGAAGTGAAGCAAATGCTGCACTGAGTGAAGGCGGGACATCTAAGGTCGCATTAGCTAAACTGGTTGAATCATGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

418

Amino Acids

45.68

Weight (kDa)

5.06

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16520 AT3G16520 AT3G16520
fragaria_vesca	FvH4_1g30110 FvH4_7g30500 FvH4_7g30540
malus_domestica	MD01G1210600.v1.1 MD01G1210700.v1.1 MD07G1280800.v1.1 MD07G1281000.v1.1
prunus_persica	Prupe.2G303000_v2.0.a1
pyrus_communis	pycom01g22110 pycom07g25550
rosa_chinensis	RchiOBHm_Chr1g0378901 RchiOBHm_Chr1g0378931 RchiOBHm_Chr1g0378941
rosa_laevigata	RLG00000026407 RLG00000026408 RLG00000026410
rosa_multiflora	Rmu_sc0000556.1_g000032 Rmu_sc0000556.1_g000035 Rmu_sc0006761.1_g000001 Rmu_sc0006761.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280260 Rroxscaffold_4G00280270 Rroxscaffold_4G00280280
rosa_rugosa	Rorug01G0411000 Rorug01G0411500 Rorug07G0124400
rosa_samantha	Rh1AG433800 Rh1BG391400 Rh1BG391600 Rh1CG404200 Rh1CG404400 Rh1DG422600 Rh1DG422800 Rh7BG250700
rosa_wichuraiana	Rw0G000080 Rw0G000090 Rw1G037860 Rw1G037880 Rw1G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	985
AciI	CCGC	5 cut(s)	153, 205, 283, 1083, 1209
AclWI	GGATC	2 cut(s)	977, 990
AcoI	YGGCCR	1 cut(s)	910
AdeI	CACNNNGTG	1 cut(s)	1202
AfaI	GTAC	2 cut(s)	531, 540
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	275, 572, 656, 665, 1244
AjiI	CACGTC	2 cut(s)	301, 801
AjnI	CCWGG	2 cut(s)	406, 523
AluBI	AGCT	8 cut(s)	333, 347, 446, 632, 852, 890, 1105, 1232
AluI	AGCT	8 cut(s)	333, 347, 446, 632, 852, 890, 1105, 1232
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	2 cut(s)	223, 377
AlwI	GGATC	2 cut(s)	977, 990
Ama87I	CYCGRG	2 cut(s)	619, 788
Aor13HI	TCCGGA	1 cut(s)	985
AoxI	GGCC	3 cut(s)	46, 910, 973
ApeKI	GCWGC	1 cut(s)	1193
AseI	ATTAAT	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	3 cut(s)	27, 83, 1078
AvaI	CYCGRG	2 cut(s)	619, 788
AvaII	GGWCC	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	789
BalI	TGGCCA	1 cut(s)	912
BamHI	GGATCC	1 cut(s)	982
BarI	GAAGNNNNNNTAC	2 cut(s)	928, 960
BbsI	GAAGAC	1 cut(s)	826
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	1 cut(s)	1180
BccI	CCATC	7 cut(s)	40, 102, 200, 329, 686, 737, 1123
BciT130I	CCWGG	2 cut(s)	408, 525
BcoDI	GTCTC	2 cut(s)	223, 377
BfaI	CTAG	3 cut(s)	443, 602, 669
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	1194
BlsI	GCNGC	1 cut(s)	1195
Bme1390I	CCNGG	2 cut(s)	408, 525
Bme18I	GGWCC	1 cut(s)	743
BmeT110I	CYCGRG	2 cut(s)	619, 788
BmgBI	CACGTC	2 cut(s)	301, 801
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	2 cut(s)	440, 984
BmrFI	CCNGG	2 cut(s)	408, 525
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	826
BpmI	CTGGAG	1 cut(s)	1127
Bpu10I	CCTNAGC	1 cut(s)	853
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	985
BsaXI	ACNNNNNCTCC	4 cut(s)	709, 739, 1137, 1167
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	1063
Bse1I	ACTGG	2 cut(s)	536, 1242
Bse3DI	GCAATG	2 cut(s)	162, 583
BseAI	TCCGGA	1 cut(s)	985
BseBI	CCWGG	2 cut(s)	408, 525
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	5 cut(s)	10, 94, 108, 185, 402
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	2 cut(s)	162, 583
BseMII	CTCAG	3 cut(s)	773, 1166, 1190
BseNI	ACTGG	2 cut(s)	536, 1242
BseRI	GAGGAG	2 cut(s)	896, 919
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	1 cut(s)	1180
BseYI	CCCAGC	1 cut(s)	632
BsgI	GTGCAG	2 cut(s)	453, 1179
BshFI	GGCC	3 cut(s)	48, 912, 975
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	2 cut(s)	619, 788
BsiSI	CCGG	3 cut(s)	243, 986, 1064
BslFI	GGGAC	1 cut(s)	1225
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	2 cut(s)	223, 377
BsmFI	GGGAC	1 cut(s)	1225
BsmI	GAATGC	1 cut(s)	599
BsnI	GGCC	3 cut(s)	48, 912, 975
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	2 cut(s)	619, 788
Bsp1286I	GDGCHC	2 cut(s)	685, 789
Bsp13I	TCCGGA	1 cut(s)	985
Bsp143I	GATC	3 cut(s)	394, 982, 1164
BspACI	CCGC	5 cut(s)	153, 205, 283, 1083, 1209
BspANI	GGCC	3 cut(s)	48, 912, 975
BspCNI	CTCAG	3 cut(s)	772, 1167, 1191
BspEI	TCCGGA	1 cut(s)	985
BspLI	GGNNCC	2 cut(s)	440, 984
BspPI	GGATC	2 cut(s)	977, 990
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	2 cut(s)	162, 583
BsrFI	RCCGGY	1 cut(s)	1063
BsrI	ACTGG	2 cut(s)	536, 1242
BssAI	RCCGGY	1 cut(s)	1063
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	3 cut(s)	394, 982, 1164
Bst2UI	CCWGG	2 cut(s)	408, 525
Bst4CI	ACNGT	2 cut(s)	217, 340
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstC8I	GCNNGC	2 cut(s)	704, 973
BstDEI	CTNAG	7 cut(s)	104, 547, 759, 853, 1175, 1199, 1218
BstF5I	GGATG	5 cut(s)	10, 94, 108, 185, 402
BstKTI	GATC	3 cut(s)	397, 985, 1167
BstMAI	GTCTC	2 cut(s)	223, 377
BstMBI	GATC	3 cut(s)	394, 982, 1164
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 1193
BstNI	CCWGG	2 cut(s)	408, 525
BstSCI	CCNGG	2 cut(s)	406, 523
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	789
BstV1I	GCAGC	1 cut(s)	1180
BstV2I	GAAGAC	1 cut(s)	826
BstX2I	RGATCY	1 cut(s)	982
BstYI	RGATCY	1 cut(s)	982
BsuRI	GGCC	3 cut(s)	48, 912, 975
BtrI	CACGTC	2 cut(s)	301, 801
BtsCI	GGATG	5 cut(s)	10, 94, 108, 185, 402
BtsIMutI	CAGTG	4 cut(s)	213, 336, 480, 1196
Cac8I	GCNNGC	2 cut(s)	704, 973
Cfr10I	RCCGGY	1 cut(s)	1063
Cfr13I	GGNCC	1 cut(s)	743
Csp6I	GTAC	2 cut(s)	530, 539
CviAII	CATG	4 cut(s)	257, 355, 721, 1248
CviQI	GTAC	2 cut(s)	530, 539
DdeI	CTNAG	7 cut(s)	104, 547, 759, 853, 1175, 1199, 1218
DpnI	GATC	3 cut(s)	396, 984, 1166
DpnII	GATC	3 cut(s)	394, 982, 1164
DraIII	CACNNNGTG	1 cut(s)	1202
EaeI	YGGCCR	1 cut(s)	910
EciI	GGCGGA	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	743
Eco88I	CYCGRG	2 cut(s)	619, 788
EcoRII	CCWGG	2 cut(s)	406, 523
FaeI	CATG	4 cut(s)	260, 358, 724, 1251
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	1225
FatI	CATG	4 cut(s)	256, 354, 720, 1247
FauI	CCCGC	2 cut(s)	1076, 1202
Fnu4HI	GCNGC	1 cut(s)	1194
FokI	GGATG	5 cut(s)	17, 81, 95, 172, 389
Fsp4HI	GCNGC	1 cut(s)	1194
FspBI	CTAG	3 cut(s)	443, 602, 669
GluI	GCNGC	1 cut(s)	1194
GsaI	CCCAGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	1127
HaeIII	GGCC	3 cut(s)	48, 912, 975
HapII	CCGG	3 cut(s)	243, 986, 1064
Hin1II	CATG	4 cut(s)	260, 358, 724, 1251
HindIII	AAGCTT	2 cut(s)	345, 850
HinfI	GANTC	7 cut(s)	656, 809, 1073, 1111, 1133, 1148, 1244
HpaII	CCGG	3 cut(s)	243, 986, 1064
HphI	GGTGA	3 cut(s)	27, 83, 1078
Hpy166II	GTNNAC	4 cut(s)	304, 646, 864, 1069
Hpy188I	TCNGA	8 cut(s)	377, 399, 680, 691, 762, 1138, 1157, 1176
Hpy188III	TCNNGA	3 cut(s)	569, 986, 1007
Hpy8I	GTNNAC	4 cut(s)	304, 646, 864, 1069
HpyAV	CCTTC	6 cut(s)	108, 460, 470, 954, 1136, 1199
HpyCH4III	ACNGT	2 cut(s)	217, 340
HpyCH4IV	ACGT	2 cut(s)	300, 800
HpyCH4V	TGCA	5 cut(s)	434, 738, 971, 1097, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 1193
HpyF3I	CTNAG	7 cut(s)	104, 547, 759, 853, 1175, 1199, 1218
HpySE526I	ACGT	2 cut(s)	300, 800
Hsp92II	CATG	4 cut(s)	260, 358, 724, 1251
Kpn2I	TCCGGA	1 cut(s)	985
Kzo9I	GATC	3 cut(s)	394, 982, 1164
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	1 cut(s)	1180
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	3 cut(s)	443, 602, 669
MaeII	ACGT	2 cut(s)	300, 800
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	3 cut(s)	396, 984, 1166
MboI	GATC	3 cut(s)	394, 982, 1164
MboII	GAAGA	4 cut(s)	190, 355, 826, 1174
MflI	RGATCY	1 cut(s)	982
MhlI	GDGCHC	2 cut(s)	685, 789
MlsI	TGGCCA	1 cut(s)	912
MluNI	TGGCCA	1 cut(s)	912
MlyI	GAGTC	2 cut(s)	1127, 1157
MmeI	TCCRAC	2 cut(s)	351, 858
Mox20I	TGGCCA	1 cut(s)	912
MroI	TCCGGA	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	3 cut(s)	495, 749, 1022
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	3 cut(s)	243, 986, 1064
MspR9I	CCNGG	2 cut(s)	408, 525
Mva1269I	GAATGC	1 cut(s)	599
MvaI	CCWGG	2 cut(s)	408, 525
MwoI	GCNNNNNNNGC	2 cut(s)	14, 1193
NdeII	GATC	3 cut(s)	394, 982, 1164
NlaIII	CATG	4 cut(s)	260, 358, 724, 1251
NlaIV	GGNNCC	2 cut(s)	440, 984
PaeR7I	CTCGAG	1 cut(s)	619
PctI	GAATGC	1 cut(s)	599
PfeI	GAWTC	5 cut(s)	656, 809, 1073, 1111, 1244
PkrI	GCNGC	1 cut(s)	1195
PleI	GAGTC	2 cut(s)	1127, 1156
PpsI	GAGTC	2 cut(s)	1127, 1156
PshBI	ATTAAT	1 cut(s)	749
Psp6I	CCWGG	2 cut(s)	406, 523
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	2 cut(s)	406, 523
PspN4I	GGNNCC	2 cut(s)	440, 984
PspPI	GGNCC	1 cut(s)	743
PspXI	VCTCGAGB	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	982
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	2 cut(s)	531, 540
RsaNI	GTAC	2 cut(s)	530, 539
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	495, 749, 1022
SatI	GCNGC	1 cut(s)	1194
Sau3AI	GATC	3 cut(s)	394, 982, 1164
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	2 cut(s)	1127, 1157
ScrFI	CCNGG	2 cut(s)	408, 525
SduI	GDGCHC	2 cut(s)	685, 789
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	619
SinI	GGWCC	1 cut(s)	743
SlaI	CTCGAG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
SsiI	CCGC	5 cut(s)	153, 205, 283, 1083, 1209
SspMI	CTAG	3 cut(s)	443, 602, 669
StyD4I	CCNGG	2 cut(s)	406, 523
TaaI	ACNGT	2 cut(s)	217, 340
TaiI	ACGT	2 cut(s)	303, 803
TaqI	TCGA	3 cut(s)	620, 1114, 1167
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	5 cut(s)	656, 809, 1073, 1111, 1244
Tru1I	TTAA	3 cut(s)	495, 749, 1022
Tru9I	TTAA	3 cut(s)	495, 749, 1022
TscAI	CASTG	4 cut(s)	220, 343, 487, 1203
TseI	GCWGC	1 cut(s)	1193
TspDTI	ATGAA	2 cut(s)	273, 606
TspGWI	ACGGA	1 cut(s)	923
TspRI	CASTG	4 cut(s)	220, 343, 487, 1203
VpaK11BI	GGWCC	1 cut(s)	743
VspI	ATTAAT	1 cut(s)	749
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	619
XspI	CTAG	3 cut(s)	443, 602, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.