Rorug01G0411500

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002368
Physical Location & Seq
Reverse (-)
51623735 .. 51626682
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0411500.1

Sequence Viewer

Length: 1404 bp
ATGATGTGGAATGGGGACCGTAGACAGAGTTTATGTATATTTGCACTTGAAACACAGAAGAAGCAGCAAAAAGAGAACCAGAATCTGAATCAGGGAAAAAAGGCTGGTAGTACTAGTACCAAAGATCATCAGACAAATGCTGGTGAGGAGAGATGTGCACTGTATGTTCTCGGAGCCAGTAATGCAGAAGAGGTGGAATATTATTATGATGTCATTAAAGAACCAATGGATTTTGGCACGATTACAGCAAAACTCAATGGAGGAAGCTACAAAGCACTGCAAGAATTTGAGCATGATGTAACACTGGTACGGAGCAATGCTATGCTTTTCAACGATTCAAGTACCCTTTATTATGAAGAGGCTCATGCGATAAGAAATCTAGCGACGAAGTTGTTTAATTTTTTGAAAACTGACCCTTTGTGGAAATATCAAAATCTGATAGGGGACTATACCTGCCGATGCAGAGGTGGAAGAAGATCCAAGTATTCTGAAGTAGATCAACGCTATACCTACCGGCCTCTGAATAAATTGCTCAATGAAAATGAGTCAATAGCAGCTACAGTCTATCTCAGCCCACAAGAACTAGTGCAGAATAAGCAGAATAGTACTGGACACACAGAAAGCCTGCTGCAGTTTGTTAAAGATCTAGGGCCTACTGCTAATACATTTGCGTGTTGGAAGTTACAAAGTTATGCAGAAGAAGCGCCTAACGTGGAAAGGGTATTGACAGCAGATCAAGACACTGGGGGTTTCCACTTTATGAATGCCTTACTTGGAGATGGGAGTTCTGAATGGGACACATACGGTAACCTCGAGGGAAAACCAGTTCGAACTATGCTTGATCAGGACAATGGGAATTCTGACTTTACCAGATCCTTATTTGGAAGTTCCAACTTATCTGCTCAGGGTACAAGCATCCACTTCAGTGGAAAATCTGTCTGGGGCAGGCCTGATCAAAACTGCTGGTGTTCCTTCATCGACAATCCCTCATTTGGAAATGGATATTCTTTTCCTTCTACATGGAAAAGACAAGTTGAAGCCAACAACTTATATTCAAGTGCTTTTGATAAGGGTAAGAATGTCCAAGTAGCTAACATATCTTCTTTAGAGCAGAAGATACCGGCTGCAAAAGGTTATGGTTCTTCATCAGCAGCATGGCTTTCCCAATTTATGTCTGGAGCAACTCAGAGCCCAGCCACTCGCACTAGTTACTCCAGCAATGTGGAGGAGGCAGGCCAAGACTGGAAACGGTTCAGGCCAACAGAGGCACCACCACAGCCTGTTTCTAGCCGGCTGTTCCAGCCGCAATCAACATCAGCTGGGCCCTCACAGTGGGAGACATCAACCTCTAATGCAAAGCCTGTAAAGTTATCAGACATAGATGAATGGCTCCGAAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 map00942
Pfam Domains
Protein Families
UDPGT

Protein Analysis

467

Amino Acids

52.33

Weight (kDa)

6.06

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 59 - 122 8.8e-16 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 812
Acc36I ACCTGC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 1267
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 1304
AclWI GGATC 2 cut(s) 471, 867
AcsI RAATTY 2 cut(s) 284, 856
AcuI CTGAAG 2 cut(s) 510, 907
AfaI GTAC 6 cut(s) 112, 118, 309, 343, 607, 910
AfiI CCNNNNNNNGG 2 cut(s) 992, 1332
AgsI TTSAA 6 cut(s) 50, 331, 339, 406, 1037, 1056
AhlI ACTAGT 3 cut(s) 113, 583, 1205
AleI CACNNNNGTG 1 cut(s) 924
AloI GAACNNNNNNTCC 2 cut(s) 810, 842
AluBI AGCT 4 cut(s) 267, 557, 1091, 1319
AluI AGCT 4 cut(s) 267, 557, 1091, 1319
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 1331
Alw44I GTGCAC 1 cut(s) 156
AlwI GGATC 2 cut(s) 471, 867
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 812
AoxI GGCC 6 cut(s) 515, 650, 947, 1234, 1256, 1322
ApaI GGGCCC 1 cut(s) 1326
ApaLI GTGCAC 1 cut(s) 156
ApeKI GCWGC 5 cut(s) 64, 554, 628, 1124, 1151
ApoI RAATTY 2 cut(s) 284, 856
Asp700I GAANNNNTTC 1 cut(s) 1250
AspLEI GCGC 1 cut(s) 706
AspS9I GGNCC 4 cut(s) 16, 650, 1322, 1323
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 829
AvaI CYCGRG 1 cut(s) 812
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 2 cut(s) 160, 1326
BanI GGYRCC 1 cut(s) 1267
BanII GRGCYC 2 cut(s) 1193, 1326
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 5 cut(s) 76, 566, 615, 1111, 1163
BccI CCATC 1 cut(s) 773
BclI TGATCA 2 cut(s) 841, 952
BcoDI GTCTC 1 cut(s) 1331
BcuI ACTAGT 3 cut(s) 113, 583, 1205
BfaI CTAG 6 cut(s) 114, 380, 584, 647, 1206, 1287
BfmI CTRYAG 2 cut(s) 558, 629
BfoI RGCGCY 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 461
BglII AGATCT 1 cut(s) 643
BisI GCNGC 6 cut(s) 65, 555, 629, 1125, 1152, 1304
BlsI GCNGC 6 cut(s) 66, 556, 630, 1126, 1153, 1305
BmcAI AGTACT 2 cut(s) 112, 607
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 812
BmgT120I GGNCC 4 cut(s) 16, 650, 1322, 1323
BmiI GGNNCC 5 cut(s) 17, 175, 1269, 1324, 1391
BmrI ACTGGG 1 cut(s) 753
BmsI GCATC 2 cut(s) 449, 924
BmuI ACTGGG 1 cut(s) 753
BpmI CTGGAG 2 cut(s) 1197, 1198
Bpu10I CCTNAGC 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 829
Bsc4I CCNNNNNNNGG 2 cut(s) 992, 1332
Bse118I RCCGGY 3 cut(s) 513, 1120, 1290
Bse1I ACTGG 6 cut(s) 177, 309, 613, 748, 824, 1247
Bse3DI GCAATG 2 cut(s) 322, 1225
BseGI GGATG 1 cut(s) 915
BseLI CCNNNNNNNGG 2 cut(s) 992, 1332
BseMI GCAATG 2 cut(s) 322, 1225
BseMII CTCAG 3 cut(s) 583, 917, 1199
BseNI ACTGG 6 cut(s) 177, 309, 613, 748, 824, 1247
BseRI GAGGAG 2 cut(s) 161, 1241
BseSI GKGCMC 2 cut(s) 160, 1326
BseXI GCAGC 5 cut(s) 76, 566, 615, 1111, 1163
BseYI CCCAGC 2 cut(s) 1192, 1319
BsgI GTGCAG 1 cut(s) 608
BshFI GGCC 6 cut(s) 517, 652, 949, 1236, 1258, 1324
BshNI GGYRCC 1 cut(s) 1267
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 812
BsiSI CCGG 3 cut(s) 514, 1121, 1291
BslFI GGGAC 3 cut(s) 29, 458, 809
BslI CCNNNNNNNGG 2 cut(s) 992, 1332
BsmAI GTCTC 1 cut(s) 1331
BsmFI GGGAC 3 cut(s) 29, 458, 809
BsmI GAATGC 1 cut(s) 769
BsnI GGCC 6 cut(s) 517, 652, 949, 1236, 1258, 1324
BsoBI CYCGRG 1 cut(s) 812
Bsp119I TTCGAA 1 cut(s) 829
Bsp120I GGGCCC 1 cut(s) 1322
Bsp1286I GDGCHC 3 cut(s) 160, 1193, 1326
Bsp143I GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
BspACI CCGC 1 cut(s) 1304
BspANI GGCC 6 cut(s) 517, 652, 949, 1236, 1258, 1324
BspCNI CTCAG 3 cut(s) 582, 916, 1198
BspLI GGNNCC 5 cut(s) 17, 175, 1269, 1324, 1391
BspMAI CTGCAG 1 cut(s) 633
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 2 cut(s) 471, 867
BspT104I TTCGAA 1 cut(s) 829
BspT107I GGYRCC 1 cut(s) 1267
BsrDI GCAATG 2 cut(s) 322, 1225
BsrFI RCCGGY 3 cut(s) 513, 1120, 1290
BsrI ACTGG 6 cut(s) 177, 309, 613, 748, 824, 1247
BssAI RCCGGY 3 cut(s) 513, 1120, 1290
BssMI GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
Bst4CI ACNGT 6 cut(s) 20, 162, 562, 806, 1251, 1332
Bst6I CTCTTC 2 cut(s) 183, 351
BstBI TTCGAA 1 cut(s) 829
BstC8I GCNNGC 4 cut(s) 626, 947, 1234, 1292
BstDEI CTNAG 3 cut(s) 569, 903, 1185
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 1 cut(s) 915
BstH2I RGCGCY 1 cut(s) 707
BstHHI GCGC 1 cut(s) 706
BstKTI GATC 8 cut(s) 127, 479, 499, 646, 736, 844, 875, 955
BstMAI GTCTC 1 cut(s) 1331
BstMBI GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
BstMWI GCNNNNNNNGC 4 cut(s) 182, 595, 701, 1300
BstPI GGTNACC 1 cut(s) 806
BstSFI CTRYAG 2 cut(s) 558, 629
BstSLI GKGCMC 2 cut(s) 160, 1326
BstV1I GCAGC 5 cut(s) 76, 566, 615, 1111, 1163
BstX2I RGATCY 3 cut(s) 476, 643, 872
BstXI CCANNNNNNTGG 2 cut(s) 926, 1222
BstYI RGATCY 3 cut(s) 476, 643, 872
BsuRI GGCC 6 cut(s) 517, 652, 949, 1236, 1258, 1324
BtsCI GGATG 1 cut(s) 915
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 6 cut(s) 158, 275, 302, 741, 931, 1337
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 4 cut(s) 626, 947, 1234, 1292
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 706
Cfr10I RCCGGY 3 cut(s) 513, 1120, 1290
Cfr13I GGNCC 4 cut(s) 16, 650, 1322, 1323
Csp6I GTAC 6 cut(s) 111, 117, 308, 342, 606, 909
CviAII CATG 4 cut(s) 293, 365, 1020, 1155
CviQI GTAC 6 cut(s) 111, 117, 308, 342, 606, 909
DdeI CTNAG 3 cut(s) 569, 903, 1185
DpnI GATC 8 cut(s) 126, 478, 498, 645, 735, 843, 874, 954
DpnII GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
Eam1104I CTCTTC 2 cut(s) 183, 351
EarI CTCTTC 2 cut(s) 183, 351
Eco147I AGGCCT 1 cut(s) 949
Eco24I GRGCYC 2 cut(s) 1193, 1326
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 510, 907
Eco88I CYCGRG 1 cut(s) 812
Eco91I GGTNACC 1 cut(s) 806
EcoO109I RGGNCCY 2 cut(s) 650, 1323
EcoO65I GGTNACC 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 856
EcoT38I GRGCYC 2 cut(s) 1193, 1326
FaeI CATG 4 cut(s) 296, 368, 1023, 1158
FaqI GGGAC 3 cut(s) 29, 458, 809
FatI CATG 4 cut(s) 292, 364, 1019, 1154
FbaI TGATCA 2 cut(s) 841, 952
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 6 cut(s) 65, 555, 629, 1125, 1152, 1304
FokI GGATG 1 cut(s) 902
FriOI GRGCYC 2 cut(s) 1193, 1326
Fsp4HI GCNGC 6 cut(s) 65, 555, 629, 1125, 1152, 1304
FspBI CTAG 6 cut(s) 114, 380, 584, 647, 1206, 1287
GlaI GCGC 1 cut(s) 705
GluI GCNGC 6 cut(s) 65, 555, 629, 1125, 1152, 1304
GsaI CCCAGC 2 cut(s) 1196, 1323
GsuI CTGGAG 2 cut(s) 1197, 1198
HaeII RGCGCY 1 cut(s) 707
HaeIII GGCC 6 cut(s) 517, 652, 949, 1236, 1258, 1324
HapII CCGG 3 cut(s) 514, 1121, 1291
HhaI GCGC 1 cut(s) 706
Hin1II CATG 4 cut(s) 296, 368, 1023, 1158
Hin6I GCGC 1 cut(s) 704
HinP1I GCGC 1 cut(s) 704
HinfI GANTC 4 cut(s) 82, 88, 335, 545
HpaII CCGG 3 cut(s) 514, 1121, 1291
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 23, 158
Hpy188III TCNNGA 3 cut(s) 737, 845, 1176
Hpy8I GTNNAC 2 cut(s) 23, 158
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 982, 1023
HpyCH4III ACNGT 6 cut(s) 20, 162, 562, 806, 1251, 1332
HpyCH4IV ACGT 1 cut(s) 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 595, 701, 1300
HpyF3I CTNAG 3 cut(s) 569, 903, 1185
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 4 cut(s) 296, 368, 1023, 1158
HspAI GCGC 1 cut(s) 704
KroI GCCGGC 1 cut(s) 1290
KroNI GCCGGC 1 cut(s) 1292
Ksp22I TGATCA 2 cut(s) 841, 952
Kzo9I GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
LmnI GCTCC 4 cut(s) 173, 312, 1178, 1395
Lsp1109I GCAGC 5 cut(s) 76, 566, 615, 1111, 1163
LweI GCATC 2 cut(s) 449, 924
MaeI CTAG 6 cut(s) 114, 380, 584, 647, 1206, 1287
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 4 cut(s) 298, 681, 806, 1208
MalI GATC 8 cut(s) 126, 478, 498, 645, 735, 843, 874, 954
MboI GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
MboII GAAGA 9 cut(s) 70, 200, 368, 483, 486, 710, 1092, 1126, 1134
MflI RGATCY 3 cut(s) 476, 643, 872
MhlI GDGCHC 3 cut(s) 160, 1193, 1326
MluCI AATT 5 cut(s) 284, 397, 527, 856, 1166
MlyI GAGTC 1 cut(s) 554
MmeI TCCRAC 2 cut(s) 656, 915
MroNI GCCGGC 1 cut(s) 1290
MroXI GAANNNNTTC 1 cut(s) 1250
MseI TTAA 4 cut(s) 216, 396, 639, 1402
MslI CAYNNNNRTG 2 cut(s) 670, 924
MspA1I CMGCKG 1 cut(s) 1319
MspI CCGG 3 cut(s) 514, 1121, 1291
Mva1269I GAATGC 1 cut(s) 769
MwoI GCNNNNNNNGC 4 cut(s) 182, 595, 701, 1300
NaeI GCCGGC 1 cut(s) 1292
NdeII GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
NgoMIV GCCGGC 1 cut(s) 1290
NlaIII CATG 4 cut(s) 296, 368, 1023, 1158
NlaIV GGNNCC 5 cut(s) 17, 175, 1269, 1324, 1391
NspV TTCGAA 1 cut(s) 829
OliI CACNNNNGTG 1 cut(s) 924
PaeR7I CTCGAG 1 cut(s) 812
PceI AGGCCT 1 cut(s) 949
PcsI WCGNNNNNNNCGW 1 cut(s) 810
PctI GAATGC 1 cut(s) 769
PdiI GCCGGC 1 cut(s) 1292
PdmI GAANNNNTTC 1 cut(s) 1250
PfeI GAWTC 3 cut(s) 82, 88, 335
PkrI GCNGC 6 cut(s) 66, 556, 630, 1126, 1153, 1305
PleI GAGTC 1 cut(s) 553
PpsI GAGTC 1 cut(s) 553
PspEI GGTNACC 1 cut(s) 806
PspFI CCCAGC 2 cut(s) 1192, 1319
PspN4I GGNNCC 5 cut(s) 17, 175, 1269, 1324, 1391
PspOMI GGGCCC 1 cut(s) 1322
PspPI GGNCC 4 cut(s) 16, 650, 1322, 1323
PspXI VCTCGAGB 1 cut(s) 812
PstI CTGCAG 1 cut(s) 633
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 3 cut(s) 476, 643, 872
PvuII CAGCTG 1 cut(s) 1319
RsaI GTAC 6 cut(s) 112, 118, 309, 343, 607, 910
RsaNI GTAC 6 cut(s) 111, 117, 308, 342, 606, 909
RseI CAYNNNNRTG 2 cut(s) 670, 924
SaqAI TTAA 4 cut(s) 216, 396, 639, 1402
SatI GCNGC 6 cut(s) 65, 555, 629, 1125, 1152, 1304
Sau3AI GATC 8 cut(s) 124, 476, 496, 643, 733, 841, 872, 952
Sau96I GGNCC 4 cut(s) 16, 650, 1322, 1323
ScaI AGTACT 2 cut(s) 112, 607
SchI GAGTC 1 cut(s) 554
SduI GDGCHC 3 cut(s) 160, 1193, 1326
SfaNI GCATC 2 cut(s) 449, 924
SfcI CTRYAG 2 cut(s) 558, 629
Sfr274I CTCGAG 1 cut(s) 812
SfuI TTCGAA 1 cut(s) 829
SinI GGWCC 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 812
SmiMI CAYNNNNRTG 2 cut(s) 670, 924
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
SpeI ACTAGT 3 cut(s) 113, 583, 1205
Sse9I AATT 5 cut(s) 284, 397, 527, 856, 1166
SseBI AGGCCT 1 cut(s) 949
SsiI CCGC 1 cut(s) 1304
SspI AATATT 1 cut(s) 200
SspMI CTAG 6 cut(s) 114, 380, 584, 647, 1206, 1287
StuI AGGCCT 1 cut(s) 949
TaaI ACNGT 6 cut(s) 20, 162, 562, 806, 1251, 1332
TaiI ACGT 1 cut(s) 714
TaqI TCGA 3 cut(s) 813, 829, 978
TasI AATT 5 cut(s) 284, 397, 527, 856, 1166
TatI WGTACW 2 cut(s) 110, 605
TauI GCSGC 1 cut(s) 1306
TfiI GAWTC 3 cut(s) 82, 88, 335
Tru1I TTAA 4 cut(s) 216, 396, 639, 1402
Tru9I TTAA 4 cut(s) 216, 396, 639, 1402
TscAI CASTG 6 cut(s) 165, 282, 309, 748, 931, 1337
TseI GCWGC 5 cut(s) 64, 554, 628, 1124, 1151
TspDTI ATGAA 6 cut(s) 369, 552, 776, 964, 1134, 1398
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 6 cut(s) 165, 282, 309, 748, 931, 1337
VneI GTGCAC 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 2 cut(s) 284, 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 1172
XhoI CTCGAG 1 cut(s) 812
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 1250
XspI CTAG 6 cut(s) 114, 380, 584, 647, 1206, 1287
ZrmI AGTACT 2 cut(s) 112, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.