RchiOBHm_Chr1g0378901

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002368
Physical Location & Seq
Forward (+)
65174150 .. 65175974
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60227

Sequence Viewer

Length: 1539 bp
ATGGAGACAGGTTCATCAAAGTCATCAAAACAAGTTATAACACCCTCATTTATACTGGTTATACTTCAAAGAATCGAAAGAGGTGTAATTCATCACCACCAGCAAAGACAGAATAGAGCTATGGATGCTATTCAGGCTATAGTTTTATACCCATCACCACCCATAGGTCACTTGGTTTCTATGGTAGAGTTAGGCAAACTCATACTTACTCACCATCCTTCACTAAGCATCCACATAATCCTTGCCACCCCACCTTACAGAGCCGATGATACCGCCCCATACATTGCCTCTGTGTCTGCCACTACATCCTCCATCATCTTCCACCGCCTCCCCACTGTCTCTCTCCCTCCCTCTATCACTTCCGGCACACGCAACCATGAAACCCTAACCTTTGAAGTTCTCCGCCTCAACAACCCTCACGTCCACCAAGCCCTCCTTTCCATCTCCAACAGCTTCACTGTCCAAGCTTTTATCATGGACTTCTTCTGTGGTCTCATTGCTAATGATCTGAACATCCCTGGTTACTTTTACTTAACATCTGGTGCAGGGTTCCTAGCTTCCTTCCTTTACCTTCCTACTATTCACAAAAACACTGACAAGAGCCTTAAAGACCTTGACACCCTCATCTTTATGCCAGGAGTACCACCAGTACATTCCTTAGATATGCCGAAACCATTTCTTGAACGCAATGACAAGGCTTATGAATGCTTCCTAGAGAACTCAACCCACTCGACCAAATCAGCTGGGATTATCGTAAACACTTTTGAATCACTTGAACCTAGAACTATCAGAGCACTATCAGATGGACTATGCTTGCCTGATGATATTACCATGCCGCCCATCTACTGCATAGGACCATTAATCATTTCTCAGAGAGGTGGTGGTAGTGATGATGTGCCCGAGTGTTTGACGTGGCTGGATTCACAGCCAAGTGGAAGTGTGGTCTTCCTTTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGAGGAGATAGCTGTGGGGTTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTTGTCCGTAATCCACCTTCTCATAATCAAAGCGTGGCTATTGCAGGCCAAGTGGATCCGGATTTGGATTATTTGCTTCCAGATGGTTTTTTGGAGAGAACCAAGCATAGGGGGCTTGTGGTGAAGTCATGGGCGCCACAAGTAGAAGTTCTTAATCATGATTCAGTAGGTGGATTTGTGTGTCACTGTGGGTGGAACTCAATTTTGGAGGCGGTATGTGCTGGGGTGCCAATGTTGGCTTGGCCACTCTATGCAGAGCAGAGATTAAATAGAGTTGTTTTGGTTGAGGAAATAAAGATTGCTCTGCCGGTGAACGAATCAAAAAGTGGGTTTGTGAGTGCAAATGAGCTGGAGAATCGAGTTAGAGAGTTGATGGACTCGGAGGAAGGAGAGTCAGTCAGAAAGAAGATCGAGGCTCTGAGAAGTGAAGCAAATGCTGCACCGAGTGAAGGCGGGACATCTAAGGTCGCATTAGCTAAACTGGTTGAATCATGGAACTAA

Protein Analysis

512

Amino Acids

56.34

Weight (kDa)

5.77

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 304 - 474 6.9e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AccB1I GGYRCC 2 cut(s) 1171, 1264
AccIII TCCGGA 1 cut(s) 1096
AciI CCGC 6 cut(s) 273, 325, 403, 836, 1250, 1491
AclWI GGATC 2 cut(s) 1088, 1101
AcoI YGGCCR 2 cut(s) 1021, 1280
AcyI GRCGYC 1 cut(s) 1172
AdeI CACNNNGTG 1 cut(s) 1484
AfaI GTAC 2 cut(s) 642, 651
AfiI CCNNNNNNNGG 3 cut(s) 164, 1146, 1487
AgsI TTSAA 6 cut(s) 68, 395, 683, 767, 776, 1526
AjiI CACGTC 2 cut(s) 421, 912
AjnI CCWGG 2 cut(s) 517, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 1226, 1258
AluBI AGCT 9 cut(s) 119, 453, 467, 557, 743, 963, 1001, 1387, 1514
AluI AGCT 9 cut(s) 119, 453, 467, 557, 743, 963, 1001, 1387, 1514
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 2 cut(s) 343, 497
AlwI GGATC 2 cut(s) 1088, 1101
Ama87I CYCGRG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 1096
AoxI GGCC 3 cut(s) 1021, 1084, 1280
ApeKI GCWGC 1 cut(s) 1475
AseI ATTAAT 1 cut(s) 860
AspLEI GCGC 1 cut(s) 1174
AspS9I GGNCC 1 cut(s) 854
AsuHPI GGTGA 5 cut(s) 86, 147, 203, 1171, 1360
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 1 cut(s) 854
BaeGI GKGCMC 1 cut(s) 900
BalI TGGCCA 2 cut(s) 1023, 1282
BamHI GGATCC 1 cut(s) 1093
BanI GGYRCC 2 cut(s) 1171, 1264
BarI GAAGNNNNNNTAC 2 cut(s) 1039, 1071
BbsI GAAGAC 1 cut(s) 937
Bbv12I GWGCWC 1 cut(s) 796
BbvI GCAGC 1 cut(s) 1462
BccI CCATC 8 cut(s) 160, 222, 320, 449, 797, 848, 1115, 1405
BciT130I CCWGG 2 cut(s) 519, 636
BcoDI GTCTC 2 cut(s) 343, 497
BfaI CTAG 3 cut(s) 554, 713, 780
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 1175
BisI GCNGC 2 cut(s) 836, 1476
BlsI GCNGC 2 cut(s) 837, 1477
Bme1390I CCNGG 2 cut(s) 519, 636
Bme18I GGWCC 1 cut(s) 854
BmeT110I CYCGRG 1 cut(s) 899
BmgBI CACGTC 2 cut(s) 421, 912
BmgT120I GGNCC 1 cut(s) 854
BmiI GGNNCC 4 cut(s) 551, 1095, 1173, 1266
BmrFI CCNGG 2 cut(s) 519, 636
BmsI GCATC 2 cut(s) 115, 237
BpiI GAAGAC 1 cut(s) 937
BpmI CTGGAG 1 cut(s) 1409
Bpu10I CCTNAGC 1 cut(s) 964
BsaHI GRCGYC 1 cut(s) 1172
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 517
BsaWI WCCGGW 1 cut(s) 1096
BsaXI ACNNNNNCTCC 2 cut(s) 1419, 1449
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 1146, 1487
Bse118I RCCGGY 1 cut(s) 1345
Bse1I ACTGG 3 cut(s) 60, 647, 1524
Bse3DI GCAATG 3 cut(s) 282, 495, 694
BseAI TCCGGA 1 cut(s) 1096
BseBI CCWGG 2 cut(s) 519, 636
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 5 cut(s) 130, 214, 228, 305, 513
BseLI CCNNNNNNNGG 3 cut(s) 164, 1146, 1487
BseMI GCAATG 3 cut(s) 282, 495, 694
BseMII CTCAG 2 cut(s) 884, 1448
BseNI ACTGG 3 cut(s) 60, 647, 1524
BseRI GAGGAG 2 cut(s) 1007, 1030
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 1 cut(s) 1462
BseYI CCCAGC 2 cut(s) 743, 1259
BsgI GTGCAG 2 cut(s) 564, 1461
BshFI GGCC 3 cut(s) 1023, 1086, 1282
BshNI GGYRCC 2 cut(s) 1171, 1264
BsiHKAI GWGCWC 1 cut(s) 796
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 3 cut(s) 363, 1097, 1346
BslFI GGGAC 1 cut(s) 1507
BslI CCNNNNNNNGG 3 cut(s) 164, 1146, 1487
BsmAI GTCTC 2 cut(s) 343, 497
BsmFI GGGAC 1 cut(s) 1507
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 3 cut(s) 1023, 1086, 1282
Bso31I GGTCTC 1 cut(s) 497
BsoBI CYCGRG 1 cut(s) 899
Bsp1286I GDGCHC 2 cut(s) 796, 900
Bsp13I TCCGGA 1 cut(s) 1096
Bsp143I GATC 3 cut(s) 505, 1093, 1446
BspACI CCGC 6 cut(s) 273, 325, 403, 836, 1250, 1491
BspANI GGCC 3 cut(s) 1023, 1086, 1282
BspCNI CTCAG 2 cut(s) 883, 1449
BspEI TCCGGA 1 cut(s) 1096
BspHI TCATGA 1 cut(s) 1195
BspLI GGNNCC 4 cut(s) 551, 1095, 1173, 1266
BspPI GGATC 2 cut(s) 1088, 1101
BspT107I GGYRCC 2 cut(s) 1171, 1264
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 3 cut(s) 282, 495, 694
BsrFI RCCGGY 1 cut(s) 1345
BsrI ACTGG 3 cut(s) 60, 647, 1524
BssAI RCCGGY 1 cut(s) 1345
BssECI CCNNGG 1 cut(s) 517
BssMI GATC 3 cut(s) 505, 1093, 1446
BssNI GRCGYC 1 cut(s) 1172
Bst2UI CCWGG 2 cut(s) 519, 636
Bst4CI ACNGT 3 cut(s) 337, 460, 1226
BstACI GRCGYC 1 cut(s) 1172
BstAPI GCANNNNNTGC 1 cut(s) 1475
BstC8I GCNNGC 2 cut(s) 815, 1084
BstDEI CTNAG 6 cut(s) 224, 658, 870, 964, 1457, 1500
BstF5I GGATG 5 cut(s) 130, 214, 228, 305, 513
BstH2I RGCGCY 1 cut(s) 1175
BstHHI GCGC 1 cut(s) 1174
BstKTI GATC 3 cut(s) 508, 1096, 1449
BstMAI GTCTC 2 cut(s) 343, 497
BstMBI GATC 3 cut(s) 505, 1093, 1446
BstMWI GCNNNNNNNGC 5 cut(s) 125, 134, 1150, 1256, 1475
BstNI CCWGG 2 cut(s) 519, 636
BstSCI CCNGG 2 cut(s) 517, 634
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 900
BstV1I GCAGC 1 cut(s) 1462
BstV2I GAAGAC 1 cut(s) 937
BstX2I RGATCY 1 cut(s) 1093
BstYI RGATCY 1 cut(s) 1093
BsuRI GGCC 3 cut(s) 1023, 1086, 1282
BtrI CACGTC 2 cut(s) 421, 912
BtsCI GGATG 5 cut(s) 130, 214, 228, 305, 513
BtsIMutI CAGTG 4 cut(s) 333, 456, 591, 1222
Cac8I GCNNGC 2 cut(s) 815, 1084
CciI TCATGA 1 cut(s) 1195
CfoI GCGC 1 cut(s) 1174
Cfr10I RCCGGY 1 cut(s) 1345
Cfr13I GGNCC 1 cut(s) 854
Csp6I GTAC 2 cut(s) 641, 650
CviAII CATG 6 cut(s) 377, 475, 832, 1167, 1196, 1530
CviQI GTAC 2 cut(s) 641, 650
DdeI CTNAG 6 cut(s) 224, 658, 870, 964, 1457, 1500
DinI GGCGCC 1 cut(s) 1173
DpnI GATC 3 cut(s) 507, 1095, 1448
DpnII GATC 3 cut(s) 505, 1093, 1446
DraIII CACNNNGTG 1 cut(s) 1484
EaeI YGGCCR 2 cut(s) 1021, 1280
EciI GGCGGA 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 854
Eco88I CYCGRG 1 cut(s) 899
EcoRII CCWGG 2 cut(s) 517, 634
EgeI GGCGCC 1 cut(s) 1173
EheI GGCGCC 1 cut(s) 1173
FaeI CATG 6 cut(s) 380, 478, 835, 1170, 1199, 1533
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 1507
FatI CATG 6 cut(s) 376, 474, 831, 1166, 1195, 1529
FauI CCCGC 1 cut(s) 1484
Fnu4HI GCNGC 2 cut(s) 836, 1476
FokI GGATG 5 cut(s) 137, 201, 215, 292, 500
Fsp4HI GCNGC 2 cut(s) 836, 1476
FspBI CTAG 3 cut(s) 554, 713, 780
GlaI GCGC 1 cut(s) 1173
GluI GCNGC 2 cut(s) 836, 1476
GsaI CCCAGC 2 cut(s) 747, 1263
GsuI CTGGAG 1 cut(s) 1409
HaeII RGCGCY 1 cut(s) 1175
HaeIII GGCC 3 cut(s) 1023, 1086, 1282
HapII CCGG 3 cut(s) 363, 1097, 1346
HhaI GCGC 1 cut(s) 1174
Hin1I GRCGYC 1 cut(s) 1172
Hin1II CATG 6 cut(s) 380, 478, 835, 1170, 1199, 1533
Hin6I GCGC 1 cut(s) 1172
HinP1I GCGC 1 cut(s) 1172
HindIII AAGCTT 2 cut(s) 465, 961
HinfI GANTC 9 cut(s) 72, 767, 920, 1199, 1355, 1393, 1415, 1430, 1526
HpaII CCGG 3 cut(s) 363, 1097, 1346
HphI GGTGA 5 cut(s) 86, 147, 203, 1171, 1360
Hpy166II GTNNAC 4 cut(s) 424, 757, 975, 1351
Hpy188I TCNGA 7 cut(s) 510, 791, 802, 873, 1420, 1439, 1458
Hpy188III TCNNGA 4 cut(s) 680, 1097, 1118, 1196
Hpy8I GTNNAC 4 cut(s) 424, 757, 975, 1351
HpyAV CCTTC 6 cut(s) 228, 571, 581, 1065, 1418, 1481
HpyCH4III ACNGT 3 cut(s) 337, 460, 1226
HpyCH4IV ACGT 2 cut(s) 420, 911
HpyCH4V TGCA 6 cut(s) 545, 849, 1082, 1292, 1379, 1478
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 134, 1150, 1256, 1475
HpyF3I CTNAG 6 cut(s) 224, 658, 870, 964, 1457, 1500
HpySE526I ACGT 2 cut(s) 420, 911
Hsp92I GRCGYC 1 cut(s) 1172
Hsp92II CATG 6 cut(s) 380, 478, 835, 1170, 1199, 1533
HspAI GCGC 1 cut(s) 1172
KasI GGCGCC 1 cut(s) 1171
Kpn2I TCCGGA 1 cut(s) 1096
Kzo9I GATC 3 cut(s) 505, 1093, 1446
LmnI GCTCC 1 cut(s) 982
Lsp1109I GCAGC 1 cut(s) 1462
LweI GCATC 2 cut(s) 115, 237
MaeI CTAG 3 cut(s) 554, 713, 780
MaeII ACGT 2 cut(s) 420, 911
MaeIII GTNAC 3 cut(s) 167, 521, 1220
MalI GATC 3 cut(s) 507, 1095, 1448
MboI GATC 3 cut(s) 505, 1093, 1446
MboII GAAGA 4 cut(s) 310, 475, 937, 1456
MflI RGATCY 1 cut(s) 1093
MhlI GDGCHC 2 cut(s) 796, 900
MlsI TGGCCA 2 cut(s) 1023, 1282
MluCI AATT 2 cut(s) 87, 1239
MluNI TGGCCA 2 cut(s) 1023, 1282
Mly113I GGCGCC 1 cut(s) 1172
MlyI GAGTC 2 cut(s) 1409, 1439
MmeI TCCRAC 2 cut(s) 471, 969
Mox20I TGGCCA 2 cut(s) 1023, 1282
MroI TCCGGA 1 cut(s) 1096
MscI TGGCCA 2 cut(s) 1023, 1282
MseI TTAA 5 cut(s) 533, 606, 860, 1191, 1304
MslI CAYNNNNRTG 1 cut(s) 629
Msp20I TGGCCA 2 cut(s) 1023, 1282
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 3 cut(s) 363, 1097, 1346
MspR9I CCNGG 2 cut(s) 519, 636
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 2 cut(s) 519, 636
MwoI GCNNNNNNNGC 5 cut(s) 125, 134, 1150, 1256, 1475
NarI GGCGCC 1 cut(s) 1172
NdeII GATC 3 cut(s) 505, 1093, 1446
NlaIII CATG 6 cut(s) 380, 478, 835, 1170, 1199, 1533
NlaIV GGNNCC 4 cut(s) 551, 1095, 1173, 1266
NmuCI GTSAC 2 cut(s) 167, 1220
PagI TCATGA 1 cut(s) 1195
PctI GAATGC 1 cut(s) 710
PfeI GAWTC 7 cut(s) 72, 767, 920, 1199, 1355, 1393, 1526
PkrI GCNGC 2 cut(s) 837, 1477
PleI GAGTC 2 cut(s) 1409, 1438
PluTI GGCGCC 1 cut(s) 1175
PpsI GAGTC 2 cut(s) 1409, 1438
PshBI ATTAAT 1 cut(s) 860
PsiI TTATAA 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 517, 634
PspFI CCCAGC 2 cut(s) 743, 1259
PspGI CCWGG 2 cut(s) 517, 634
PspN4I GGNNCC 4 cut(s) 551, 1095, 1173, 1266
PspPI GGNCC 1 cut(s) 854
PsuI RGATCY 1 cut(s) 1093
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 2 cut(s) 642, 651
RsaNI GTAC 2 cut(s) 641, 650
RseI CAYNNNNRTG 1 cut(s) 629
SaqAI TTAA 5 cut(s) 533, 606, 860, 1191, 1304
SatI GCNGC 2 cut(s) 836, 1476
Sau3AI GATC 3 cut(s) 505, 1093, 1446
Sau96I GGNCC 1 cut(s) 854
SchI GAGTC 2 cut(s) 1409, 1439
ScrFI CCNGG 2 cut(s) 519, 636
SduI GDGCHC 2 cut(s) 796, 900
SfaNI GCATC 2 cut(s) 115, 237
SfcI CTRYAG 1 cut(s) 138
SfoI GGCGCC 1 cut(s) 1173
SinI GGWCC 1 cut(s) 854
SmiMI CAYNNNNRTG 1 cut(s) 629
Sse9I AATT 2 cut(s) 87, 1239
SsiI CCGC 6 cut(s) 273, 325, 403, 836, 1250, 1491
SspDI GGCGCC 1 cut(s) 1171
SspMI CTAG 3 cut(s) 554, 713, 780
StyD4I CCNGG 2 cut(s) 517, 634
TaaI ACNGT 3 cut(s) 337, 460, 1226
TaiI ACGT 2 cut(s) 423, 914
TaqI TCGA 4 cut(s) 75, 731, 1396, 1449
TasI AATT 2 cut(s) 87, 1239
TatI WGTACW 1 cut(s) 649
TauI GCSGC 1 cut(s) 838
TfiI GAWTC 7 cut(s) 72, 767, 920, 1199, 1355, 1393, 1526
Tru1I TTAA 5 cut(s) 533, 606, 860, 1191, 1304
Tru9I TTAA 5 cut(s) 533, 606, 860, 1191, 1304
TscAI CASTG 4 cut(s) 340, 463, 598, 1229
TseFI GTSAC 2 cut(s) 167, 1220
TseI GCWGC 1 cut(s) 1475
Tsp45I GTSAC 2 cut(s) 167, 1220
TspDTI ATGAA 3 cut(s) 80, 393, 717
TspGWI ACGGA 1 cut(s) 1034
TspRI CASTG 4 cut(s) 340, 463, 598, 1229
VpaK11BI GGWCC 1 cut(s) 854
VspI ATTAAT 1 cut(s) 860
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 1275
XspI CTAG 3 cut(s) 554, 713, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.