Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002368

Physical Location & Seq

Genomic Coordinates Reverse (-)

2828837 .. 2830264

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGAGGCGATTGTTTTATACCCATCACCACCTATTGGCCACTTGGTTTCCATGGTAGAGTTAGGCAAATTCATACTTACTTGCCATCCTTCATGTAGTATCCACATACTCATCACCACCCCACCGTACAGAGCCGATGACACCGCCCCATATATTGCCTCTGTCTCTGCCACTACTCCCTCCATCATCTTCCACCATCTCCCAACTATCTCTCTCCCTCCCTCCTCCACTTCCTCTCCCAACCATGAAACCCTAACCTTTGAAGTCCTTCGGCTCAACAACCCCAACGTCCACAAAGCCCTCCTTTCCCTCTCCAACAATTTTACTGTTCAAGCTTTTATCATGGACTTCTTCTGTGGTCTTGGGCTTTCTGTTGCTATTGATCTGAATATCCCAGGATATTTTTTCTTCACATCTGGTGCAGGATGCCTAGCTTCCTTTCTTACACTCCCTGCTATTCACAAAAACACTGACAAGAGCCTCAAAGACCTTAACACCCTTCTCTCTATTCCAGGAGTACCACCAATACCTTCCTCTGATATGCCAAAACCAGTTTTGGTACGTAATGACAAGGCCTATGAGTGCTTCCTAGAAAACTCAACACAATTACCCAAATCAGCTGGGATTATCGTGAACACATTTGAATCACTCGAATCTAGGGCCATTAGAGCAATATCAGATGGACTATGCTTGCCTGAAGATGTTCCCACACCACCCATCTTTTGCATAGGTCCGTTAATCGTTGCTCACAATCAAAGAGGTGGTGGTAATGATGATATGCCTGAGTGTTTGACATGGCTGGACTCACAGCCAAGTGGCAGTGTGGTCTTTCTCTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTGGGGGAAATAGCTGTGGGGTTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTGGTCCGTAACCCACCTTCTCTTAATCAAAGTGTGGCTATTGCGGTCCATCCCGACCTGGATTTGGATTCTTTGCTTCCAGATGGCTTCTTGGATAGGACCAAGGATAGGGGTCTTGTAGTGAAGTCATGGGCACCACAGGTGGCAGTGCTGAATCATGATTCTGTAGGTGGGTTTGTGAGTCACTGTGGGTGGAACTCGGTGTTGGAGGCAGTGTGTGCTGGGGTGCCAATTGTGTCTTGGCCACTCTATGCAGAGCAGAGATTTAATAGGGTTATTTTGGTGGAGGAGATAAAGATTACTTTGCCAATGAACGAGTCACTAGACAGTTTTGTAAATGCAATAGAGGTGGAGAAGCGAGTTAGAGAGTTGATGGACTCGGAGAAAGGAGAGTTAATCAGGAAGAGGACCAAGGCCTTGAAGAGTGAAGCAAATGCTGCTCTGAGTGAAGCCGGGACATCTCGGATTGCATTAACTAAACTTGTCGAATCATGGAATCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

476

Amino Acids

51.69

Weight (kDa)

5.49

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	265 - 399	2e-21	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16520 AT3G16520 AT3G16520
fragaria_vesca	FvH4_1g30110 FvH4_7g30500 FvH4_7g30540
malus_domestica	MD01G1210600.v1.1 MD01G1210700.v1.1 MD07G1280800.v1.1 MD07G1281000.v1.1
prunus_persica	Prupe.2G303000_v2.0.a1
pyrus_communis	pycom01g22110 pycom07g25550
rosa_chinensis	RchiOBHm_Chr1g0378901 RchiOBHm_Chr1g0378931 RchiOBHm_Chr1g0378941
rosa_laevigata	RLG00000026407 RLG00000026408 RLG00000026410
rosa_multiflora	Rmu_sc0000556.1_g000032 Rmu_sc0000556.1_g000035 Rmu_sc0006761.1_g000001 Rmu_sc0006761.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280260 Rroxscaffold_4G00280270 Rroxscaffold_4G00280280
rosa_rugosa	Rorug01G0411000 Rorug01G0411500 Rorug07G0124400
rosa_samantha	Rh1AG433800 Rh1BG391400 Rh1BG391600 Rh1CG404200 Rh1CG404400 Rh1DG422600 Rh1DG422800 Rh7BG250700
rosa_wichuraiana	Rw0G000080 Rw0G000090 Rw1G037860 Rw1G037880 Rw1G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1054, 1147
AccB7I	CCANNNNNTGG	1 cut(s)	35
AciI	CCGC	2 cut(s)	144, 965
AcoI	YGGCCR	3 cut(s)	37, 904, 1163
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	3 cut(s)	128, 519, 561
AfiI	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
AgsI	TTSAA	4 cut(s)	263, 332, 644, 1342
AjnI	CCWGG	3 cut(s)	394, 511, 978
AjuI	GAANNNNNNNTTGG	2 cut(s)	1109, 1141
AluBI	AGCT	5 cut(s)	335, 434, 620, 846, 884
AluI	AGCT	5 cut(s)	335, 434, 620, 846, 884
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	6 cut(s)	37, 573, 660, 904, 1163, 1335
ApeKI	GCWGC	1 cut(s)	1358
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	2 cut(s)	267, 702
AspS9I	GGNCC	6 cut(s)	660, 731, 925, 967, 1020, 1329
AsuC2I	CCSGG	1 cut(s)	1375
AsuHPI	GGTGA	2 cut(s)	18, 106
AvaII	GGWCC	5 cut(s)	731, 925, 967, 1020, 1329
BaeGI	GKGCMC	1 cut(s)	1057
BalI	TGGCCA	3 cut(s)	39, 906, 1165
BanI	GGYRCC	2 cut(s)	1054, 1147
BarI	GAAGNNNNNNTAC	2 cut(s)	922, 954
BbvI	GCAGC	1 cut(s)	1345
BccI	CCATC	9 cut(s)	31, 93, 191, 204, 674, 725, 978, 998, 1288
BciT130I	CCWGG	3 cut(s)	396, 513, 980
BciVI	GTATCC	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	1375
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	4 cut(s)	431, 590, 657, 1244
BfmI	CTRYAG	1 cut(s)	1086
BfuI	GTATCC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	1359
BlsI	GCNGC	1 cut(s)	1360
Bme1390I	CCNGG	4 cut(s)	396, 513, 980, 1375
Bme18I	GGWCC	5 cut(s)	731, 925, 967, 1020, 1329
BmgT120I	GGNCC	6 cut(s)	660, 731, 925, 967, 1020, 1329
BmiI	GGNNCC	2 cut(s)	1056, 1149
BmrFI	CCNGG	4 cut(s)	396, 513, 980, 1375
BmsI	GCATC	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	847
BpuMI	CCSGG	1 cut(s)	1375
BsaAI	YACGTR	1 cut(s)	563
BsaJI	CCNNGG	4 cut(s)	51, 394, 1023, 1332
BsaXI	ACNNNNNCTCC	4 cut(s)	220, 250, 1121, 1151
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
Bse1I	ACTGG	1 cut(s)	551
BseBI	CCWGG	3 cut(s)	396, 513, 980
BseDI	CCNNGG	4 cut(s)	51, 394, 1023, 1332
BseGI	GGATG	3 cut(s)	85, 431, 970
BseLI	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
BseMII	CTCAG	2 cut(s)	774, 1355
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	3 cut(s)	214, 913, 1223
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	1 cut(s)	1345
BseYI	CCCAGC	2 cut(s)	620, 1142
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	6 cut(s)	39, 575, 662, 906, 1165, 1337
BshNI	GGYRCC	2 cut(s)	1054, 1147
BsiSI	CCGG	1 cut(s)	1374
BslFI	GGGAC	1 cut(s)	1390
BslI	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	1390
BsnI	GGCC	6 cut(s)	39, 575, 662, 906, 1165, 1337
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp143I	GATC	1 cut(s)	382
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	2 cut(s)	144, 965
BspANI	GGCC	6 cut(s)	39, 575, 662, 906, 1165, 1337
BspCNI	CTCAG	2 cut(s)	775, 1356
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	2 cut(s)	1056, 1149
BspT107I	GGYRCC	2 cut(s)	1054, 1147
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	4 cut(s)	51, 394, 1023, 1332
BssMI	GATC	1 cut(s)	382
BssT1I	CCWWGG	3 cut(s)	51, 1023, 1332
Bst2UI	CCWGG	3 cut(s)	396, 513, 980
Bst4CI	ACNGT	4 cut(s)	126, 328, 1109, 1250
Bst6I	CTCTTC	2 cut(s)	1319, 1337
BstAPI	GCANNNNNTGC	2 cut(s)	1139, 1358
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	3 cut(s)	783, 847, 1364
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	85, 431, 970
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	668, 1139, 1358
BstNI	CCWGG	3 cut(s)	396, 513, 980
BstSCI	CCNGG	4 cut(s)	394, 511, 978, 1373
BstSFI	CTRYAG	1 cut(s)	1086
BstSLI	GKGCMC	1 cut(s)	1057
BstSNI	TACGTA	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	1345
BsuI	GTATCC	1 cut(s)	110
BsuRI	GGCC	6 cut(s)	39, 575, 662, 906, 1165, 1337
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	85, 431, 970
BtsI	GCAGTG	3 cut(s)	826, 1074, 1140
BtsIMutI	CAGTG	5 cut(s)	468, 826, 1074, 1105, 1140
Cac8I	GCNNGC	1 cut(s)	692
CciI	TCATGA	1 cut(s)	1078
Cfr13I	GGNCC	6 cut(s)	660, 731, 925, 967, 1020, 1329
Csp6I	GTAC	3 cut(s)	127, 518, 560
CspCI	CAANNNNNGTGG	2 cut(s)	1251, 1286
CviAII	CATG	8 cut(s)	52, 93, 245, 343, 795, 1050, 1079, 1413
CviQI	GTAC	3 cut(s)	127, 518, 560
DdeI	CTNAG	3 cut(s)	783, 847, 1364
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	3 cut(s)	37, 904, 1163
Eam1104I	CTCTTC	2 cut(s)	1319, 1337
EarI	CTCTTC	2 cut(s)	1319, 1337
Eco105I	TACGTA	1 cut(s)	563
Eco130I	CCWWGG	3 cut(s)	51, 1023, 1332
Eco147I	AGGCCT	2 cut(s)	575, 1337
Eco47I	GGWCC	5 cut(s)	731, 925, 967, 1020, 1329
Eco57I	CTGAAG	1 cut(s)	717
EcoRII	CCWGG	3 cut(s)	394, 511, 978
EcoT14I	CCWWGG	3 cut(s)	51, 1023, 1332
ErhI	CCWWGG	3 cut(s)	51, 1023, 1332
FaeI	CATG	8 cut(s)	55, 96, 248, 346, 798, 1053, 1082, 1416
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	1390
FatI	CATG	8 cut(s)	51, 92, 244, 342, 794, 1049, 1078, 1412
Fnu4HI	GCNGC	1 cut(s)	1359
FokI	GGATG	3 cut(s)	72, 438, 957
Fsp4HI	GCNGC	1 cut(s)	1359
FspBI	CTAG	4 cut(s)	431, 590, 657, 1244
GluI	GCNGC	1 cut(s)	1359
GsaI	CCCAGC	2 cut(s)	624, 1146
HaeIII	GGCC	6 cut(s)	39, 575, 662, 906, 1165, 1337
HapII	CCGG	1 cut(s)	1374
Hin1II	CATG	8 cut(s)	55, 96, 248, 346, 798, 1053, 1082, 1416
HindIII	AAGCTT	2 cut(s)	333, 844
HpaII	CCGG	1 cut(s)	1374
HphI	GGTGA	2 cut(s)	18, 106
Hpy166II	GTNNAC	3 cut(s)	292, 634, 858
Hpy188I	TCNGA	6 cut(s)	387, 538, 679, 1303, 1365, 1386
Hpy188III	TCNNGA	5 cut(s)	631, 974, 1001, 1079, 1321
Hpy8I	GTNNAC	3 cut(s)	292, 634, 858
HpyAV	CCTTC	5 cut(s)	99, 278, 509, 540, 948
HpyCH4III	ACNGT	4 cut(s)	126, 328, 1109, 1250
HpyCH4IV	ACGT	2 cut(s)	288, 562
HpyCH4V	TGCA	5 cut(s)	422, 726, 1175, 1262, 1391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	668, 1139, 1358
HpyF3I	CTNAG	3 cut(s)	783, 847, 1364
HpySE526I	ACGT	2 cut(s)	288, 562
Hsp92II	CATG	8 cut(s)	55, 96, 248, 346, 798, 1053, 1082, 1416
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	1 cut(s)	1345
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	4 cut(s)	431, 590, 657, 1244
MaeII	ACGT	2 cut(s)	288, 562
MaeIII	GTNAC	3 cut(s)	929, 1103, 1239
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	6 cut(s)	181, 343, 400, 710, 1336, 1354
MfeI	CAATTG	1 cut(s)	1152
MhlI	GDGCHC	1 cut(s)	1057
MlsI	TGGCCA	3 cut(s)	39, 906, 1165
MluCI	AATT	4 cut(s)	68, 319, 605, 1152
MluNI	TGGCCA	3 cut(s)	39, 906, 1165
MlyI	GAGTC	4 cut(s)	797, 1111, 1247, 1292
MmeI	TCCRAC	2 cut(s)	339, 1107
Mox20I	TGGCCA	3 cut(s)	39, 906, 1165
MroXI	GAANNNNTTC	2 cut(s)	267, 702
MscI	TGGCCA	3 cut(s)	39, 906, 1165
MseI	TTAA	6 cut(s)	492, 737, 945, 1188, 1316, 1394
Msp20I	TGGCCA	3 cut(s)	39, 906, 1165
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	1374
MspR9I	CCNGG	4 cut(s)	396, 513, 980, 1375
MunI	CAATTG	1 cut(s)	1152
MvaI	CCWGG	3 cut(s)	396, 513, 980
MwoI	GCNNNNNNNGC	3 cut(s)	668, 1139, 1358
NciI	CCSGG	1 cut(s)	1375
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	8 cut(s)	55, 96, 248, 346, 798, 1053, 1082, 1416
NlaIV	GGNNCC	2 cut(s)	1056, 1149
NmuCI	GTSAC	2 cut(s)	1103, 1239
PagI	TCATGA	1 cut(s)	1078
PceI	AGGCCT	2 cut(s)	575, 1337
PdmI	GAANNNNTTC	2 cut(s)	267, 702
PfeI	GAWTC	7 cut(s)	644, 653, 989, 1075, 1082, 1409, 1417
PflMI	CCANNNNNTGG	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	1360
PleI	GAGTC	4 cut(s)	797, 1110, 1246, 1292
PpsI	GAGTC	4 cut(s)	797, 1110, 1246, 1292
Ppu21I	YACGTR	1 cut(s)	563
Psp6I	CCWGG	3 cut(s)	394, 511, 978
PspFI	CCCAGC	2 cut(s)	620, 1142
PspGI	CCWGG	3 cut(s)	394, 511, 978
PspN4I	GGNNCC	2 cut(s)	1056, 1149
PspPI	GGNCC	6 cut(s)	660, 731, 925, 967, 1020, 1329
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	3 cut(s)	128, 519, 561
RsaNI	GTAC	3 cut(s)	127, 518, 560
SaqAI	TTAA	6 cut(s)	492, 737, 945, 1188, 1316, 1394
SatI	GCNGC	1 cut(s)	1359
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	6 cut(s)	660, 731, 925, 967, 1020, 1329
SchI	GAGTC	4 cut(s)	797, 1111, 1247, 1292
ScrFI	CCNGG	4 cut(s)	396, 513, 980, 1375
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	1086
SinI	GGWCC	5 cut(s)	731, 925, 967, 1020, 1329
SnaBI	TACGTA	1 cut(s)	563
Sse9I	AATT	4 cut(s)	68, 319, 605, 1152
SseBI	AGGCCT	2 cut(s)	575, 1337
SsiI	CCGC	2 cut(s)	144, 965
SspMI	CTAG	4 cut(s)	431, 590, 657, 1244
StuI	AGGCCT	2 cut(s)	575, 1337
StyD4I	CCNGG	4 cut(s)	394, 511, 978, 1373
StyI	CCWWGG	3 cut(s)	51, 1023, 1332
TaaI	ACNGT	4 cut(s)	126, 328, 1109, 1250
TaiI	ACGT	2 cut(s)	291, 565
TaqI	TCGA	2 cut(s)	651, 1407
TasI	AATT	4 cut(s)	68, 319, 605, 1152
TfiI	GAWTC	7 cut(s)	644, 653, 989, 1075, 1082, 1409, 1417
Tru1I	TTAA	6 cut(s)	492, 737, 945, 1188, 1316, 1394
Tru9I	TTAA	6 cut(s)	492, 737, 945, 1188, 1316, 1394
TscAI	CASTG	5 cut(s)	475, 826, 1074, 1112, 1140
TseFI	GTSAC	2 cut(s)	1103, 1239
TseI	GCWGC	1 cut(s)	1358
Tsp45I	GTSAC	2 cut(s)	1103, 1239
TspDTI	ATGAA	4 cut(s)	61, 81, 261, 1247
TspGWI	ACGGA	2 cut(s)	723, 917
TspRI	CASTG	5 cut(s)	475, 826, 1074, 1112, 1140
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	5 cut(s)	731, 925, 967, 1020, 1329
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1158
XmnI	GAANNNNTTC	2 cut(s)	267, 702
XspI	CTAG	4 cut(s)	431, 590, 657, 1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.