Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002368

Physical Location & Seq

Genomic Coordinates Forward (+)

23830031 .. 23832498

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGAGGCGATTATTTTGTACCCATCACCACCTATTGGCCACTTGGTTTCCATGGTAGAGTTGGGAAAATTCATACTTACTTGCCATCCTTCATGTAGCATACATATACTTATCACCACCCCACCTTACAGAGCCGATGATACCGCCCCGTATATTGCCTCTGTCTCTGCCACCACTCCCTCCATCATCTTCCACCATCTCCCCACTATCTCTCTCCCTCCCTCCTCCATGTCCTCTCCCAACCATGAAAGCCTAACCTTTGAAGTGCTTCGGCTCAACAACCCCAACGTCCACAAAGCCCTCCTTTCCATCTCCAACAACTTTACTGTTCAAGCTTTTATCATGGACTTCTTCTGTGCTCTTGGGCTTTCTGTTGCTAGTGATCTGAACATCCCAGGTTACTTTTTCTTCACATCTGGTGCAGGATGCCTAGCTTCCTTCTTTATACTCCCTGCTATTCACAAAAACACTGAGAAGAGCCTCAAACACCTTAACACCCTTCTCTATGTTCCAGGAGTGCCACCAATACCTTCCTCTGATATGCCAAAACCAGTTTTGGAACGTAATGATAAGGCTTATGAGTGCTTTCTAGAAAACTCAATCCAATTACCCAAATCAGCTGGGATTATCGTGAACACGTTTGAATCACTCGAATCTAGGGCCATCAGAGCAATATCAGATGGACTATGCTTGCCTGAAGATACTCCCACACCTCCCATCTACTGCATAGGACCATTAATCTTTGCTCACAATCAAAGAGGTGGTGGTAGTGATGATGTGCCTGAGTGTTTGACATGGCTGGACTCACAGCCAAGTGGAAGTGTGGTGTTCCTTTGTTTTGGAAGCTTAGGATTGTTTACAAAGGAGCAGTTAGGGGAAATAGCTATGGGGTTAGAGAGGAGTGGCCAAAGGTTCTTGTGGGTGGTCCGTAACCCACCTTCTGATAATCAAAGTGTGGCTATTACGGCCCTATCTGACCCAGATTTGGATTCTTTGCTTCCGGATGGTTTCTTGGTTAGAACCATGGATAGGGGTCTTGTAGTGAAGTCATGGGCACCACAAGTGGCAGTGCTGAATCATGATTCGGTAGGTGGGTTTGTGAGCCACTGTGGATGGAACTCAGTGTTGGAGGCGGTGTGTGCTGGAGTGCCAATGGTGTCTTGGCCACTCTATGCAGAGCAGAGATTTAATCGGGTTGTTTTGGTGGAGGAAATAAAGATCGCTTTGCCAATGAACGAGTCACCGGACGGGTTTGTAAACGCAATAGAGGTAGAGAAGCGTGTTAGAGAGTTAATGGACTCAGAGGAAGGAGAGTCAATCAGGAAGAGGGCCAACGCTCTTAAGAGTGAAGCAAAGGCTGCTCTGAGTGAAGGTGGGACATCTCGGGTTGCATTAACTAAACTCGTCGAATCATGGCACCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

476

Amino Acids

51.74

Weight (kDa)

5.33

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	266 - 399	3.7e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16520 AT3G16520 AT3G16520
fragaria_vesca	FvH4_1g30110 FvH4_7g30500 FvH4_7g30540
malus_domestica	MD01G1210600.v1.1 MD01G1210700.v1.1 MD07G1280800.v1.1 MD07G1281000.v1.1
prunus_persica	Prupe.2G303000_v2.0.a1
pyrus_communis	pycom01g22110 pycom07g25550
rosa_chinensis	RchiOBHm_Chr1g0378901 RchiOBHm_Chr1g0378931 RchiOBHm_Chr1g0378941
rosa_laevigata	RLG00000026407 RLG00000026408 RLG00000026410
rosa_multiflora	Rmu_sc0000556.1_g000032 Rmu_sc0000556.1_g000035 Rmu_sc0006761.1_g000001 Rmu_sc0006761.1_g000002
rosa_roxburghii	Rroxscaffold_4G00280260 Rroxscaffold_4G00280270 Rroxscaffold_4G00280280
rosa_rugosa	Rorug01G0411000 Rorug01G0411500 Rorug07G0124400
rosa_samantha	Rh1AG433800 Rh1BG391400 Rh1BG391600 Rh1CG404200 Rh1CG404400 Rh1DG422600 Rh1DG422800 Rh7BG250700
rosa_wichuraiana	Rw0G000080 Rw0G000090 Rw1G037860 Rw1G037880 Rw1G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1054, 1416
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	2 cut(s)	144, 1133
AcoI	YGGCCR	3 cut(s)	37, 904, 1163
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
AflII	CTTAAG	1 cut(s)	1340
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	3 cut(s)	263, 332, 644
AjnI	CCWGG	2 cut(s)	394, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	1109, 1141
AluBI	AGCT	5 cut(s)	335, 434, 620, 846, 884
AluI	AGCT	5 cut(s)	335, 434, 620, 846, 884
Alw21I	GWGCWC	1 cut(s)	361
Alw26I	GTCTC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	1383
Aor13HI	TCCGGA	1 cut(s)	1000
AoxI	GGCC	6 cut(s)	37, 660, 904, 966, 1163, 1329
ApeKI	GCWGC	1 cut(s)	1358
ApoI	RAATTY	1 cut(s)	68
AseI	ATTAAT	1 cut(s)	737
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	5 cut(s)	660, 731, 925, 967, 1329
AsuHPI	GGTGA	3 cut(s)	18, 106, 1233
AvaI	CYCGRG	1 cut(s)	1383
AvaII	GGWCC	2 cut(s)	731, 925
BaeGI	GKGCMC	1 cut(s)	1057
BalI	TGGCCA	3 cut(s)	39, 906, 1165
BanI	GGYRCC	2 cut(s)	1054, 1416
BarI	GAAGNNNNNNTAC	2 cut(s)	922, 954
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	1345
BceAI	ACGGC	1 cut(s)	981
BciT130I	CCWGG	2 cut(s)	396, 513
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	4 cut(s)	378, 431, 590, 657
BfrI	CTTAAG	1 cut(s)	1340
BisI	GCNGC	1 cut(s)	1359
BlsI	GCNGC	1 cut(s)	1360
Bme1390I	CCNGG	2 cut(s)	396, 513
Bme18I	GGWCC	2 cut(s)	731, 925
BmeT110I	CYCGRG	1 cut(s)	1383
BmgT120I	GGNCC	5 cut(s)	660, 731, 925, 967, 1329
BmiI	GGNNCC	2 cut(s)	1056, 1418
BmrFI	CCNGG	2 cut(s)	396, 513
BmsI	GCATC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	1164
Bpu10I	CCTNAGC	1 cut(s)	847
BsaJI	CCNNGG	4 cut(s)	51, 394, 1023, 1420
BsaWI	WCCGGW	2 cut(s)	1000, 1243
BsaXI	ACNNNNNCTCC	2 cut(s)	1121, 1151
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
Bse1I	ACTGG	1 cut(s)	551
BseAI	TCCGGA	1 cut(s)	1000
BseBI	CCWGG	2 cut(s)	396, 513
BseDI	CCNNGG	4 cut(s)	51, 394, 1023, 1420
BseGI	GGATG	5 cut(s)	85, 390, 431, 1009, 1118
BseLI	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
BseMII	CTCAG	5 cut(s)	462, 774, 1134, 1314, 1355
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	2 cut(s)	214, 913
BseSI	GKGCMC	1 cut(s)	1057
BseXI	GCAGC	1 cut(s)	1345
BseYI	CCCAGC	1 cut(s)	620
BsgI	GTGCAG	1 cut(s)	441
BshFI	GGCC	6 cut(s)	39, 662, 906, 968, 1165, 1331
BshNI	GGYRCC	2 cut(s)	1054, 1416
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	1383
BsiSI	CCGG	2 cut(s)	1001, 1244
BslFI	GGGAC	1 cut(s)	1390
BslI	CCNNNNNNNGG	3 cut(s)	35, 985, 1029
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	1390
BsnI	GGCC	6 cut(s)	39, 662, 906, 968, 1165, 1331
BsoBI	CYCGRG	1 cut(s)	1383
Bsp1286I	GDGCHC	2 cut(s)	361, 1057
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp143I	GATC	2 cut(s)	382, 1218
Bsp19I	CCATGG	2 cut(s)	51, 1023
BspACI	CCGC	2 cut(s)	144, 1133
BspANI	GGCC	6 cut(s)	39, 662, 906, 968, 1165, 1331
BspCNI	CTCAG	5 cut(s)	463, 775, 1133, 1313, 1356
BspEI	TCCGGA	1 cut(s)	1000
BspHI	TCATGA	1 cut(s)	1078
BspLI	GGNNCC	2 cut(s)	1056, 1418
BspQI	GCTCTTC	1 cut(s)	470
BspT107I	GGYRCC	2 cut(s)	1054, 1416
BspTI	CTTAAG	1 cut(s)	1340
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	4 cut(s)	51, 394, 1023, 1420
BssMI	GATC	2 cut(s)	382, 1218
BssT1I	CCWWGG	3 cut(s)	51, 1023, 1420
Bst2UI	CCWGG	2 cut(s)	396, 513
Bst4CI	ACNGT	2 cut(s)	328, 1109
Bst6I	CTCTTC	2 cut(s)	470, 1319
BstAFI	CTTAAG	1 cut(s)	1340
BstAPI	GCANNNNNTGC	1 cut(s)	1358
BstC8I	GCNNGC	1 cut(s)	692
BstDEI	CTNAG	6 cut(s)	471, 783, 847, 1120, 1300, 1364
BstDSI	CCRYGG	2 cut(s)	51, 1023
BstF5I	GGATG	5 cut(s)	85, 390, 431, 1009, 1118
BstKTI	GATC	2 cut(s)	385, 1221
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	2 cut(s)	382, 1218
BstMWI	GCNNNNNNNGC	4 cut(s)	668, 965, 1139, 1358
BstNI	CCWGG	2 cut(s)	396, 513
BstSCI	CCNGG	2 cut(s)	394, 511
BstSLI	GKGCMC	1 cut(s)	1057
BstV1I	GCAGC	1 cut(s)	1345
BsuRI	GGCC	6 cut(s)	39, 662, 906, 968, 1165, 1331
BtgI	CCRYGG	2 cut(s)	51, 1023
BtsCI	GGATG	5 cut(s)	85, 390, 431, 1009, 1118
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	4 cut(s)	468, 1074, 1105, 1128
Cac8I	GCNNGC	1 cut(s)	692
CciI	TCATGA	1 cut(s)	1078
Cfr13I	GGNCC	5 cut(s)	660, 731, 925, 967, 1329
Csp6I	GTAC	1 cut(s)	19
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	6 cut(s)	471, 783, 847, 1120, 1300, 1364
DpnI	GATC	2 cut(s)	384, 1220
DpnII	GATC	2 cut(s)	382, 1218
EaeI	YGGCCR	3 cut(s)	37, 904, 1163
Eam1104I	CTCTTC	2 cut(s)	470, 1319
EarI	CTCTTC	2 cut(s)	470, 1319
Eco130I	CCWWGG	3 cut(s)	51, 1023, 1420
Eco47I	GGWCC	2 cut(s)	731, 925
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	1383
EcoRII	CCWGG	2 cut(s)	394, 511
EcoT14I	CCWWGG	3 cut(s)	51, 1023, 1420
ErhI	CCWWGG	3 cut(s)	51, 1023, 1420
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	1390
Fnu4HI	GCNGC	1 cut(s)	1359
FokI	GGATG	5 cut(s)	72, 377, 438, 1016, 1125
Fsp4HI	GCNGC	1 cut(s)	1359
FspBI	CTAG	4 cut(s)	378, 431, 590, 657
GluI	GCNGC	1 cut(s)	1359
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	1164
HaeIII	GGCC	6 cut(s)	39, 662, 906, 968, 1165, 1331
HapII	CCGG	2 cut(s)	1001, 1244
HindIII	AAGCTT	2 cut(s)	333, 844
HpaII	CCGG	2 cut(s)	1001, 1244
HphI	GGTGA	3 cut(s)	18, 106, 1233
Hpy166II	GTNNAC	4 cut(s)	292, 634, 858, 1258
Hpy188I	TCNGA	8 cut(s)	387, 538, 668, 679, 943, 976, 1303, 1365
Hpy188III	TCNNGA	5 cut(s)	590, 631, 1001, 1079, 1321
Hpy8I	GTNNAC	4 cut(s)	292, 634, 858, 1258
Hpy99I	CGWCG	1 cut(s)	1409
HpyAV	CCTTC	7 cut(s)	99, 448, 509, 540, 948, 1301, 1364
HpyCH4III	ACNGT	2 cut(s)	328, 1109
HpyCH4IV	ACGT	3 cut(s)	288, 562, 638
HpyCH4V	TGCA	4 cut(s)	422, 726, 1175, 1391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	668, 965, 1139, 1358
HpyF3I	CTNAG	6 cut(s)	471, 783, 847, 1120, 1300, 1364
HpySE526I	ACGT	3 cut(s)	288, 562, 638
Kpn2I	TCCGGA	1 cut(s)	1000
Kzo9I	GATC	2 cut(s)	382, 1218
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	1 cut(s)	1345
LweI	GCATC	1 cut(s)	416
MaeI	CTAG	4 cut(s)	378, 431, 590, 657
MaeII	ACGT	3 cut(s)	288, 562, 638
MaeIII	GTNAC	3 cut(s)	398, 929, 1239
MalI	GATC	2 cut(s)	384, 1220
MboI	GATC	2 cut(s)	382, 1218
MboII	GAAGA	6 cut(s)	181, 343, 400, 487, 710, 1336
MhlI	GDGCHC	2 cut(s)	361, 1057
MlsI	TGGCCA	3 cut(s)	39, 906, 1165
MluCI	AATT	2 cut(s)	68, 605
MluNI	TGGCCA	3 cut(s)	39, 906, 1165
MlyI	GAGTC	4 cut(s)	797, 1247, 1292, 1322
MmeI	TCCRAC	2 cut(s)	339, 1107
Mox20I	TGGCCA	3 cut(s)	39, 906, 1165
MroI	TCCGGA	1 cut(s)	1000
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	3 cut(s)	39, 906, 1165
MseI	TTAA	6 cut(s)	492, 737, 1188, 1292, 1341, 1394
Msp20I	TGGCCA	3 cut(s)	39, 906, 1165
MspA1I	CMGCKG	1 cut(s)	620
MspCI	CTTAAG	1 cut(s)	1340
MspI	CCGG	2 cut(s)	1001, 1244
MspR9I	CCNGG	2 cut(s)	396, 513
MvaI	CCWGG	2 cut(s)	396, 513
MwoI	GCNNNNNNNGC	4 cut(s)	668, 965, 1139, 1358
NcoI	CCATGG	2 cut(s)	51, 1023
NdeII	GATC	2 cut(s)	382, 1218
NlaIV	GGNNCC	2 cut(s)	1056, 1418
NmuCI	GTSAC	1 cut(s)	1239
PagI	TCATGA	1 cut(s)	1078
PciSI	GCTCTTC	1 cut(s)	470
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	6 cut(s)	644, 653, 989, 1075, 1082, 1409
PflMI	CCANNNNNTGG	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	1360
PleI	GAGTC	4 cut(s)	797, 1246, 1292, 1321
PpsI	GAGTC	4 cut(s)	797, 1246, 1292, 1321
PshBI	ATTAAT	1 cut(s)	737
Psp6I	CCWGG	2 cut(s)	394, 511
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	2 cut(s)	394, 511
PspN4I	GGNNCC	2 cut(s)	1056, 1418
PspPI	GGNCC	5 cut(s)	660, 731, 925, 967, 1329
PvuII	CAGCTG	1 cut(s)	620
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	6 cut(s)	492, 737, 1188, 1292, 1341, 1394
SatI	GCNGC	1 cut(s)	1359
Sau3AI	GATC	2 cut(s)	382, 1218
Sau96I	GGNCC	5 cut(s)	660, 731, 925, 967, 1329
SchI	GAGTC	4 cut(s)	797, 1247, 1292, 1322
ScrFI	CCNGG	2 cut(s)	396, 513
SduI	GDGCHC	2 cut(s)	361, 1057
SfaNI	GCATC	1 cut(s)	416
SinI	GGWCC	2 cut(s)	731, 925
SmlI	CTYRAG	1 cut(s)	1340
SmoI	CTYRAG	1 cut(s)	1340
Sse9I	AATT	2 cut(s)	68, 605
SsiI	CCGC	2 cut(s)	144, 1133
SspMI	CTAG	4 cut(s)	378, 431, 590, 657
StyD4I	CCNGG	2 cut(s)	394, 511
StyI	CCWWGG	3 cut(s)	51, 1023, 1420
TaaI	ACNGT	2 cut(s)	328, 1109
TaiI	ACGT	3 cut(s)	291, 565, 641
TaqI	TCGA	2 cut(s)	651, 1407
TasI	AATT	2 cut(s)	68, 605
TfiI	GAWTC	6 cut(s)	644, 653, 989, 1075, 1082, 1409
Tru1I	TTAA	6 cut(s)	492, 737, 1188, 1292, 1341, 1394
Tru9I	TTAA	6 cut(s)	492, 737, 1188, 1292, 1341, 1394
TscAI	CASTG	4 cut(s)	475, 1074, 1112, 1128
TseFI	GTSAC	1 cut(s)	1239
TseI	GCWGC	1 cut(s)	1358
Tsp45I	GTSAC	1 cut(s)	1239
TspDTI	ATGAA	4 cut(s)	61, 81, 261, 1247
TspGWI	ACGGA	1 cut(s)	917
TspRI	CASTG	4 cut(s)	475, 1074, 1112, 1128
Van91I	CCANNNNNTGG	1 cut(s)	35
Vha464I	CTTAAG	1 cut(s)	1340
VpaK11BI	GGWCC	2 cut(s)	731, 925
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	1 cut(s)	68
XbaI	TCTAGA	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	2 cut(s)	58, 1158
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	4 cut(s)	378, 431, 590, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.