Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

1332864 .. 1334828

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTTCTAAGTTCAAACAATTTTCAGGTTCTACAAGTTTTGGTTTTGGATATATTTGGTTGACTGTGGGTTTGGACAAGGAACAGGAGGAGGGAGATGCAATTGAAAATCAGAGAAAGAAAGATAAGAAGAAGCTTGAAGTAGAGAAATCAAAAAAGATGGGAAATGGATTGCCTTTTGGAGCTGCAAGAGGACATGAGTGTGACCCGAAAGTTATCCACAGGGATGTGAAGGCAGCAAATGTACTTGATGACTACTGTGAAGCTGTAGTTGGAGATTTTGCTTTGGCAAAGCTTTTGAATCACCAAGATTCACATGTCACCACTGCAGTGAGGGGTACCATAGGGCACATAGCTCCAGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

122

Amino Acids

13.37

Weight (kDa)

7.8

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	46 - 120	1.4e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	246, 340
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	4 cut(s)	16, 107, 140, 301
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	5 cut(s)	136, 185, 266, 295, 356
AluI	AGCT	5 cut(s)	136, 185, 266, 295, 356
ApeKI	GCWGC	2 cut(s)	185, 236
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
Asp718I	GGTACC	1 cut(s)	338
AsuHPI	GGTGA	2 cut(s)	296, 313
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	172, 248
BccI	CCATC	1 cut(s)	154
BfmI	CTRYAG	2 cut(s)	267, 327
BisI	GCNGC	2 cut(s)	186, 237
BlsI	GCNGC	2 cut(s)	187, 238
BmiI	GGNNCC	1 cut(s)	340
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	359
BseGI	GGATG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	172, 248
BshNI	GGYRCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	67, 260
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	320
BstSFI	CTRYAG	2 cut(s)	267, 327
BstSLI	GKGCMC	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	172, 248
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	2 cut(s)	324, 336
BtsIMutI	CAGTG	2 cut(s)	324, 336
Csp6I	GTAC	2 cut(s)	245, 339
CviAII	CATG	2 cut(s)	197, 317
CviJI	RGCY	5 cut(s)	136, 185, 266, 295, 356
CviKI_1	RGCY	5 cut(s)	136, 185, 266, 295, 356
CviQI	GTAC	2 cut(s)	245, 339
DdeI	CTNAG	1 cut(s)	9
FaeI	CATG	2 cut(s)	200, 320
FaiI	YATR	5 cut(s)	54, 198, 318, 344, 353
FatI	CATG	2 cut(s)	196, 316
Fnu4HI	GCNGC	2 cut(s)	186, 237
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	186, 237
GluI	GCNGC	2 cut(s)	186, 237
GsuI	CTGGAG	1 cut(s)	342
Hin1II	CATG	2 cut(s)	200, 320
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	2 cut(s)	134, 293
HinfI	GANTC	2 cut(s)	301, 311
HphI	GGTGA	2 cut(s)	296, 313
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	114, 368
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	67, 260
HpyCH4V	TGCA	3 cut(s)	101, 188, 329
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	200, 320
KpnI	GGTACC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	182, 361
LpnPI	CCDG	3 cut(s)	12, 71, 208
Lsp1109I	GCAGC	2 cut(s)	172, 248
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	2 cut(s)	203, 319
MboII	GAAGA	1 cut(s)	142
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	2 cut(s)	20, 102
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	4 cut(s)	82, 85, 185, 327
MslI	CAYNNNNRTG	3 cut(s)	201, 225, 329
MunI	CAATTG	1 cut(s)	102
NlaIII	CATG	2 cut(s)	200, 320
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	203, 319
NspI	RCATGY	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	329
PciI	ACATGT	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	301, 311
PkrI	GCNGC	2 cut(s)	187, 238
PscI	ACATGT	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	331
RsaI	GTAC	2 cut(s)	246, 340
RsaNI	GTAC	2 cut(s)	245, 339
RseI	CAYNNNNRTG	3 cut(s)	201, 225, 329
SatI	GCNGC	2 cut(s)	186, 237
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	6 cut(s)	31, 138, 187, 268, 297, 358
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	2 cut(s)	267, 327
SmiMI	CAYNNNNRTG	3 cut(s)	201, 225, 329
Sse9I	AATT	2 cut(s)	20, 102
TaaI	ACNGT	2 cut(s)	67, 260
TasI	AATT	2 cut(s)	20, 102
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	301, 311
TscAI	CASTG	2 cut(s)	331, 336
TseFI	GTSAC	2 cut(s)	203, 319
TseI	GCWGC	2 cut(s)	185, 236
Tsp45I	GTSAC	2 cut(s)	203, 319
TspRI	CASTG	2 cut(s)	331, 336
XceI	RCATGY	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.