Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

35460546 .. 35462031

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGATTCAAAGTCGTATGATCGAGCTCACCACCAAACTGAAGCAGGTTTTCTTTTACCCACTTTTCAGAGTCCAATGGCGGCTAAAACGTTCCAGTGGGTTTGGACAAGGAACAGTGGGTATGTATTTGGAACCTCTGTTTTCTATCGATTTGGCTGCAATCAATTTTGAGATAAAGCTGTATACAGATAATGTATGTCTACTGTGTGACCCGAAAGTTATCCACAGGGATGTGAAGGCAGCAAATGTACTTGATGACTACTGTGAAGCCGTAGTCGGAGATTTTGATTTGGCAAAGCTTTTGAATCACCAAGATTCACATGTTACCACTGCAGTGAGGGGCCAGGCAGCTTTAGAATTTGCCGAGTCAACTAACCAAAAAGGAGCCATACTTGATTGGGTTAAAAAGCTGCATCAGGAAAAGAAGCTTGAAATGCTAGTGGACAAGGATATTAATAACTATGATCGCATTGAGCGTGAAGAAATGATTCAAGTTGCACTCTTGTGTACTCAATGCCTTCCTGGTCATAGGCCCAGAATGTCTAAAGTGGTCAGAACGCTAGAAGGTGATGGACTTGTCTCAAGTTTCTGTTTTTGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

202

Amino Acids

22.95

Weight (kDa)

6.22

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AccI	GTMKAC	2 cut(s)	185, 202
AciI	CCGC	1 cut(s)	82
AclI	AACGTT	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	252, 511
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	4 cut(s)	11, 307, 434, 494
AjnI	CCWGG	2 cut(s)	345, 523
AleI	CACNNNNGTG	2 cut(s)	335, 505
AluBI	AGCT	6 cut(s)	28, 181, 301, 353, 412, 430
AluI	AGCT	6 cut(s)	28, 181, 301, 353, 412, 430
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	586
AoxI	GGCC	2 cut(s)	343, 533
ApeKI	GCWGC	4 cut(s)	158, 242, 350, 412
ApoI	RAATTY	1 cut(s)	359
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	343, 534
AsuHPI	GGTGA	3 cut(s)	22, 302, 581
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	145, 254, 362, 399
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	2 cut(s)	347, 525
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	2 cut(s)	440, 563
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	5 cut(s)	83, 159, 243, 351, 413
BlsI	GCNGC	5 cut(s)	84, 160, 244, 352, 414
Bme1390I	CCNGG	2 cut(s)	347, 525
BmgT120I	GGNCC	2 cut(s)	343, 534
BmiI	GGNNCC	3 cut(s)	135, 344, 388
BmrFI	CCNGG	2 cut(s)	347, 525
BmsI	GCATC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	568
Bsa29I	ATCGAT	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	347, 525
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	145, 254, 362, 399
BshFI	GGCC	2 cut(s)	345, 535
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	586
BsnI	GGCC	2 cut(s)	345, 535
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	21, 466
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	345, 535
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	135, 344, 388
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	21, 466
BssNAI	GTATAC	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	347, 525
Bst4CI	ACNGT	3 cut(s)	118, 207, 266
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	24, 469
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	2 cut(s)	21, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	2 cut(s)	347, 525
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	345, 523
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	145, 254, 362, 399
BstZ17I	GTATAC	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	345, 535
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	2 cut(s)	330, 342
BtsIMutI	CAGTG	4 cut(s)	103, 123, 330, 342
BveI	ACCTGC	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	343, 534
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	251, 510
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	2 cut(s)	251, 510
DpnI	GATC	2 cut(s)	23, 468
DpnII	GATC	2 cut(s)	21, 466
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	345, 523
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	1 cut(s)	326
FaiI	YATR	8 cut(s)	20, 125, 186, 199, 324, 392, 465, 531
FatI	CATG	1 cut(s)	322
FblI	GTMKAC	2 cut(s)	185, 202
Fnu4HI	GCNGC	5 cut(s)	83, 159, 243, 351, 413
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	5 cut(s)	83, 159, 243, 351, 413
FspBI	CTAG	2 cut(s)	440, 563
GluI	GCNGC	5 cut(s)	83, 159, 243, 351, 413
HaeIII	GGCC	2 cut(s)	345, 535
Hin1II	CATG	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
HindIII	AAGCTT	2 cut(s)	299, 428
HinfI	GANTC	6 cut(s)	7, 72, 307, 317, 368, 490
HphI	GGTGA	3 cut(s)	22, 302, 581
Hpy166II	GTNNAC	5 cut(s)	186, 203, 372, 445, 510
Hpy188I	TCNGA	3 cut(s)	71, 281, 557
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	5 cut(s)	186, 203, 372, 445, 510
HpyAV	CCTTC	3 cut(s)	232, 530, 560
HpyCH4III	ACNGT	3 cut(s)	118, 207, 266
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	161, 335, 415, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	21, 466
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	9 cut(s)	32, 109, 214, 332, 359, 404, 510, 537, 550
Lsp1109I	GCAGC	4 cut(s)	145, 254, 362, 399
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	2 cut(s)	440, 563
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	209, 325
MalI	GATC	2 cut(s)	23, 468
MboI	GATC	2 cut(s)	21, 466
MboII	GAAGA	1 cut(s)	494
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	166, 359
MlyI	GAGTC	2 cut(s)	81, 377
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	147, 333
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	3 cut(s)	405, 456, 604
MslI	CAYNNNNRTG	3 cut(s)	231, 335, 505
MspR9I	CCNGG	2 cut(s)	347, 525
MvaI	CCWGG	2 cut(s)	347, 525
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	2 cut(s)	21, 466
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	3 cut(s)	135, 344, 388
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	1 cut(s)	326
OliI	CACNNNNGTG	2 cut(s)	335, 505
PciI	ACATGT	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	4 cut(s)	7, 307, 317, 490
PkrI	GCNGC	5 cut(s)	84, 160, 244, 352, 414
PleI	GAGTC	2 cut(s)	80, 376
PpsI	GAGTC	2 cut(s)	80, 376
PscI	ACATGT	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	345, 523
PspGI	CCWGG	2 cut(s)	345, 523
PspN4I	GGNNCC	3 cut(s)	135, 344, 388
PspPI	GGNCC	2 cut(s)	343, 534
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	252, 511
RsaNI	GTAC	2 cut(s)	251, 510
RseI	CAYNNNNRTG	3 cut(s)	231, 335, 505
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	405, 456, 604
SatI	GCNGC	5 cut(s)	83, 159, 243, 351, 413
Sau3AI	GATC	2 cut(s)	21, 466
Sau96I	GGNCC	2 cut(s)	343, 534
SchI	GAGTC	2 cut(s)	81, 377
ScrFI	CCNGG	2 cut(s)	347, 525
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	3 cut(s)	231, 335, 505
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	2 cut(s)	166, 359
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	2 cut(s)	440, 563
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	345, 523
TaaI	ACNGT	3 cut(s)	118, 207, 266
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	24, 150
TasI	AATT	2 cut(s)	166, 359
TatI	WGTACW	2 cut(s)	250, 509
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	4 cut(s)	7, 307, 317, 490
Tru1I	TTAA	3 cut(s)	405, 456, 604
Tru9I	TTAA	3 cut(s)	405, 456, 604
TscAI	CASTG	4 cut(s)	103, 123, 337, 342
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	4 cut(s)	158, 242, 350, 412
Tsp45I	GTSAC	1 cut(s)	209
TspRI	CASTG	4 cut(s)	103, 123, 337, 342
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	326
XmiI	GTMKAC	2 cut(s)	185, 202
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	2 cut(s)	440, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.